BAC Information

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BAC

Clone NameB6Ng01-305J11
Chromosome6 (Build37)
Map Location 103,484,789 - 103,552,205
singlet/doubletdoublet
Overlap geneChl1, LOC666141
Upstream genenone
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305J11.bB6Ng01-305J11.g
ACCGA098845GA098846
length1,1761,178
definitionB6Ng01-305J11.b B6Ng01-305J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,551,006 - 103,552,205)(103,484,789 - 103,485,987)
sequence
gaattcactgaataataaagaccatttaagaaatgccaggagaaattgat
tactccaagagtcagaacaaccagctcagattggagaagaacaacaccat
ttagtcatagaattggtgaaagaaaagggggaaaagacaactacattcat
cttgttctgtattgtttttggatatcagaattgccagaagcagagagaca
tttaagctgagaagagctgtcgaaaagaaccctcttcaattgaaataaac
attgtaaagtactactgatatgcaaacagatatgcaaaatgatctaaaat
caatataggaatgtgaggacctagttgccctttccattgttaagtaattt
ggccaaaaattattattccactgaggtagaaagctgagaatacaaggctc
ttccctgttttatgatttaaaatatctgctaagtagtttaggatttaaac
atttctgtaatccgcctttcatatttttgtaattagtttgagcgccattt
tcctataaatcacccttttactttctcctacaataatgctaagatggaag
catcagaaaaagagaaataaggtaatctctgtttcttgaaaacattgaaa
agttcgatacaaatcaatatgtaaatcacaaacacactggatcttccttc
tgtagaaataaaaaaaatatacattttttttttcttttaaagctttgcat
agcagaacacacttgcaatctcagcactatgagggtggggctgtaagaat
cagaactacaaagttggccttggttatatgagaatctgtttcagaaagaa
agaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaaatgttcatagtctcttgctttgttctaatcctgatagagt
tcagatatgaaagcattacctcctgtgtaagatttccaggtagccactac
gatactcacaaactatctcctttagtaacatcagtgcgtgcctagagaca
aaacattcgttcagcacaccaaatagaccaacatactttaaattgtcata
aacttccaaagatatttcttcttatattcatgatactgataaaaaaaaag
ctattatgtcagtccaaaacctgctgaaagagttctcatatgctctacac
agatcctagccatgtcatgcattgaa

gaattcatttctgttcaaactgaaacataaaaacgcaatacactggacaa
ataggtgaaaggacagagcactttcagataaaacaaatgttaatgatgaa
caacatattagagtactcactattctatgtagtcaaggcaacagaagaaa
tcaaaaacagacaaaaactacagagaagctacagagaagcaaagtatgac
tcatccatctgtgggatactattagacaatcaaaaggaatcacctacgag
catattcagctattaaaagatctttcctaacaaggctaaataaaagtttg
tttgaaatcattaatgtgatattctattaaaggcaagactgaaagaagaa
aaacaaaacctttattacctaggactgacagatgacaagagaccattaat
gtaggtatgtttttataacagtttgtttgtataaacagtatttgctttct
gaattaaattctgtttgcttgcttgtttgaaacagggtctcatgtatcac
aggctggccttgaacatggtccattgcatgtgctatctactggatagatc
atggcccaaaacctaggatttatgcacgccctttaccaactgggttttac
tgtttaaaattgattacatgggctatattaaaatcttatcccaataattt
aacttaaaaaatagtaagtagccatttaccgtttattgagctgtaacaaa
gatcatacatgctactgcatgtctaaagacatcaggaattgaaaatgtac
ctgtgctggtgaagtgagagaaaactgaaaaaaaaaaagacatcttttaa
gagctagttagtttaaagtatttgtgccctgtgatgccccagacattctg
cctcagaaggtcattcaaaagaaatgttcatgtgtgctcaactcaaaaaa
caaaacaaaacaaataaacaaaaaatcatgcaatgtttttctatgcaagt
atttaaaggacaaaagaaccagaacagatttcaaaacagagaaactttga
atatataagctgttatatatgactgatacttacatgtaccatataattat
acttacacataagagacaaacatcatttgtgattttattttgtcttaaat
tatagattccaattttattgaagacttcacatagaggttcgattgcttct
ggacattgtgcttatatgacaatttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103551006_103552205
seq2: B6Ng01-305J11.b_47_1222 (reverse)

seq1  TTCAATGCAATGACCCATGGCTAGGAGATCT-TGTTGTAGCATATGGAGA  49
      |||||||| ||||  |||||||||  ||||| ||| | ||||||| ||||
seq2  TTCAATGC-ATGA--CATGGCTAG--GATCTGTGTAG-AGCATAT-GAGA  43

seq1  CACCTGTCAGCAGGTTTTGTGACTGACATAAAATTAGCTTTTTTTTTTTT  99
         || ||||||||||||| |||||||||||   ||||||||||||| | 
seq2  ACTCTTTCAGCAGGTTTTG-GACTGACATAA---TAGCTTTTTTTTTAT-  88

seq1  TTAATCCAGTATCCATGAAATTAATAAGAAGAAATTATCTTTGGAAGTTT  149
            |||||| ||||||    ||||||||||| |||||||||||||||
seq2  ------CAGTAT-CATGAA---TATAAGAAGAAA-TATCTTTGGAAGTTT  127

seq1  ATGACATTTAAAAGTATGTTGGTCTATTTGGTGTGCTGGACGAATGTTTT  199
      |||||| || |||||||||||||||||||||||||||| |||||||||||
seq2  ATGACAATTTAAAGTATGTTGGTCTATTTGGTGTGCTGAACGAATGTTTT  177

seq1  GTCTCTAGGCCACGCACTGATGTTACTAAAGGAGATAGTTTGTGAGTATC  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGG-CACGCACTGATGTTACTAAAGGAGATAGTTTGTGAGTATC  226

seq1  GTAGTGGCTACCTGGAAATCTTACACAGGAGGTAATGCTTTCATATCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGCTACCTGGAAATCTTACACAGGAGGTAATGCTTTCATATCTGA  276

seq1  ACTCTATCAGGATTAGAACAAAGCAAGAGACTATGAACATTTTCCTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCAGGATTAGAACAAAGCAAGAGACTATGAACATTTTCCTTCCT  326

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTC  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC-TTC  375

seq1  TTTCTTTCTGAAACAGATTCTCATATAACCAAGGCCAACTTTGTAGTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGAAACAGATTCTCATATAACCAAGGCCAACTTTGTAGTTCT  425

seq1  GATTCTTACAGCCCCACCCTCATAGTGCTGAGATTGCAAGTGTGTTCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTACAGCCCCACCCTCATAGTGCTGAGATTGCAAGTGTGTTCTGC  475

seq1  TATGCAAAGCTTTAAAAGAAAAAAAAAATGTATATTTTTTTTATTTCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGCTTTAAAAGAAAAAAAAAATGTATATTTTTTTTATTTCTAC  525

seq1  AGAAGGAAGATCCAGTGTGTTTGTGATTTACATATTGATTTGTATCGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGATCCAGTGTGTTTGTGATTTACATATTGATTTGTATCGAAC  575

seq1  TTTTCAATGTTTTCAAGAAACAGAGATTACCTTATTTCTCTTTTTCTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGTTTTCAAGAAACAGAGATTACCTTATTTCTCTTTTTCTGAT  625

seq1  GCTTCCATCTTAGCATTATTGTAGGAGAAAGTAAAAGGGTGATTTATAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCTTAGCATTATTGTAGGAGAAAGTAAAAGGGTGATTTATAGG  675

seq1  AAAATGGCGCTCAAACTAATTACAAAAATATGAAAGGCGGATTACAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCGCTCAAACTAATTACAAAAATATGAAAGGCGGATTACAGAAA  725

seq1  TGTTTAAATCCTAAACTACTTAGCAGATATTTTAAATCATAAAACAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATCCTAAACTACTTAGCAGATATTTTAAATCATAAAACAGGGA  775

seq1  AGAGCCTTGTATTCTCAGCTTTCTACCTCAGTGGAATAATAATTTTTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTGTATTCTCAGCTTTCTACCTCAGTGGAATAATAATTTTTGGC  825

seq1  CAAATTACTTAACAATGGAAAGGGCAACTAGGTCCTCACATTCCTATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTACTTAACAATGGAAAGGGCAACTAGGTCCTCACATTCCTATATT  875

seq1  GATTTTAGATCATTTTGCATATCTGTTTGCATATCAGTAGTACTTTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGATCATTTTGCATATCTGTTTGCATATCAGTAGTACTTTACAA  925

seq1  TGTTTATTTCAATTGAAGAGGGTTCTTTTCGACAGCTCTTCTCAGCTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTCAATTGAAGAGGGTTCTTTTCGACAGCTCTTCTCAGCTTAA  975

seq1  ATGTCTCTCTGCTTCTGGCAATTCTGATATCCAAAAACAATACAGAACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTCTGCTTCTGGCAATTCTGATATCCAAAAACAATACAGAACAA  1025

seq1  GATGAATGTAGTTGTCTTTTCCCCCTTTTCTTTCACCAATTCTATGACTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTAGTTGTCTTTTCCCCCTTTTCTTTCACCAATTCTATGACTA  1075

seq1  AATGGTGTTGTTCTTCTCCAATCTGAGCTGGTTGTTCTGACTCTTGGAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTGTTCTTCTCCAATCTGAGCTGGTTGTTCTGACTCTTGGAGT  1125

seq1  AATCAATTTCTCCTGGCATTTCTTAAATGGTCTTTATTATTCAGTGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTTCTCCTGGCATTTCTTAAATGGTCTTTATTATTCAGTGAATT  1175

seq1  C  1200
      |
seq2  C  1176


seq1: chr6_103484789_103485987
seq2: B6Ng01-305J11.g_69_1246

seq1  GAATTCATTTCTGTTCAAACTGAAACATAAAAACGCAATACACTGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGTTCAAACTGAAACATAAAAACGCAATACACTGGACAA  50

seq1  ATAGGTGAAAGGACAGAGCACTTTCAGATAAAACAAATGTTAATGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGAAAGGACAGAGCACTTTCAGATAAAACAAATGTTAATGATGAA  100

seq1  CAACATATTAGAGTACTCACTATTCTATGTAGTCAAGGCAACAGAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATTAGAGTACTCACTATTCTATGTAGTCAAGGCAACAGAAGAAA  150

seq1  TCAAAAACAGACAAAAACTACAGAGAAGCTACAGAGAAGCAAAGTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACAGACAAAAACTACAGAGAAGCTACAGAGAAGCAAAGTATGAC  200

seq1  TCATCCATCTGTGGGATACTATTAGACAATCAAAAGGAATCACCTACGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTGTGGGATACTATTAGACAATCAAAAGGAATCACCTACGAG  250

seq1  CATATTCAGCTATTAAAAGATCTTTCCTAACAAGGCTAAATAAAAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAGCTATTAAAAGATCTTTCCTAACAAGGCTAAATAAAAGTTTG  300

seq1  TTTGAAATCATTAATGTGATATTCTATTAAAGGCAAGACTGAAAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCATTAATGTGATATTCTATTAAAGGCAAGACTGAAAGAAGAA  350

seq1  AAACAAAACCTTTATTACCTAGGACTGACAGATGACAAGAGACCATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCTTTATTACCTAGGACTGACAGATGACAAGAGACCATTAAT  400

seq1  GTAGGTATGTTTTTATAACAGTTTGTTTGTATAAACAGTATTTGCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTATGTTTTTATAACAGTTTGTTTGTATAAACAGTATTTGCTTTCT  450

seq1  GAATTAAATTCTGTTTGCTTGCTTGTTTGAAACAGGGTCTCATGTATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATTCTGTTTGCTTGCTTGTTTGAAACAGGGTCTCATGTATCAC  500

seq1  AGGCTGGCCTTGAACATGGTCCATTGCATGTGCTATCTACTGGATAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACATGGTCCATTGCATGTGCTATCTACTGGATAGATC  550

seq1  ATGGCCCAAAACCTAGGATTTATGCACGCCCTTTACCAACTGGGTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAAAACCTAGGATTTATGCACGCCCTTTACCAACTGGGTTTTAC  600

seq1  TGTTTAAAATTGATTACATGGGCTATATTAAAATCTTATCCCAATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATTGATTACATGGGCTATATTAAAATCTTATCCCAATAATTT  650

seq1  AACTTAAAAAATAGTAAGTAGCCATTTACCGTTTATTGAGCTGTAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAAATAGTAAGTAGCCATTTACCGTTTATTGAGCTGTAACAAA  700

seq1  GATCATACATGCTACTGCATGTCTAAAGACATCAGGAATTGAAAATGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATACATGCTACTGCATGTCTAAAGACATCAGGAATTGAAAATGTAC  750

seq1  CTGTGCTGGTGAAGTGAGAGAAAACTGAAAAAAAAAAAGACATC-TTTAA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTGCTGGTGAAGTGAGAGAAAACTGAAAAAAAAAAAGACATCTTTTAA  800

seq1  GAGCTAGTTAAGTTTAAAGTATTTGTGCCCTGTGATGCCCCAGACATTCT  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGTT-AGTTTAAAGTATTTGTGCCCTGTGATGCCCCAGACATTCT  849

seq1  GCCTCAGAAGGTCATTCAAAAGAAATGTTCATGTGTGCTCAACTCAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTCAGAAGGTCATTCAAAAGAAATGTTCATGTGTGCTCAACTC-AAAA  898

seq1  AACAAAAACAAAAACAAATAAACAAAAAATCATGCAAATGTTTTCTATGC  949
      |||||||   |||||||||||||||||||||||||||   ||||||||||
seq2  AACAAAA--CAAAACAAATAAACAAAAAATCATGCAATGTTTTTCTATGC  946

seq1  AAGTATTTAAAGGACAAAAAGAACCAGAAACAAGAATTCAAAAACAGAAG  999
      ||||||||||||||| |||||||||||||   ||| ||| ||||||||  
seq2  AAGTATTTAAAGGAC-AAAAGAACCAGAA--CAGATTTC-AAAACAGA--  990

seq1  AAAACTTTGAATATAT-AGCTGTATATA-ATGACTGAATACTTAACATGT  1047
       ||||||||||||||| |||||| |||| ||||||| |||||| ||||||
seq2  GAAACTTTGAATATATAAGCTGT-TATATATGACTG-ATACTT-ACATGT  1037

seq1  AACATATAATTTATAACTTAACATACATAAGAGACAAACATCAAATATGT  1097
      | ||||||| |||| ||||   | ||||||||||||||||||  || |||
seq2  ACCATATAA-TTAT-ACTT---ACACATAAGAGACAAACATC--ATTTGT  1080

seq1  GATTTTA-TTTGTCT--AAATATAGATTTCAAATATATTGAAGGAATTTC  1144
      ||||||| |||||||  || |||||||| ||| | ||||||||  | |||
seq2  GATTTTATTTTGTCTTAAATTATAGATTCCAATTTTATTGAAG--ACTTC  1128

seq1  ACATAAGAAGTTTCAGATTGCTTTTTGTACATGGTGCTTATTATGAAAAT  1194
      |||| ||| |||   |||||| || || |||| ||||||| ||||| |||
seq2  ACAT-AGAGGTT--CGATTGC-TTCTGGACATTGTGCTTA-TATGACAAT  1173

seq1  TTAGT  1199
      |||||
seq2  TTAGT  1178


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