BAC Information

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BAC

Clone NameB6Ng01-305K04
Chromosome6 (Build37)
Map Location 21,221,323 - 21,300,522
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K04.bB6Ng01-305K04.g
ACCGA098878GA098879
length976508
definitionB6Ng01-305K04.b B6Ng01-305K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,299,546 - 21,300,522)(21,221,323 - 21,221,836)
sequence
gaattcttagatgttcctcacatagttgcactgtggaagcctgtctccta
taaatggggtcttgtggcagatagactgtctgaagtgctaattgttgtag
ccaactggttctaacctaggagtaattttgctttcatgtagaccactggc
tgtaaggaccaggaaacactgttagaagtagagtgggaagttattattgg
cattttgagttaaacgttggttaaaaaaaaaaactgatttgatttctaat
aacatgtagaacccaatatgaaataagaaattgcatctctacaattctac
ttttaaaagcaagaagacagagaacactgacacaagagtaaagaggtgtt
accctattccaactcctttctgggtctcagaaaatgtgactatagcaccc
aaaagttgaaaaatggtccaacccaagaattcagtaatacaggttgattt
gccatcaactacaaggatgctgctaactagctgcttctataacaaattac
tacagggtaactggtttaaaataacagaagcacaccatcctgcagcgcta
gaaaacatgtctaaatcagagataacagtaatctgtgttccttcctagga
agaaagagagaaattattttctaacttctagaagcctctggcctgtagta
catttacatcaccaaaagagcaataatagatttccatctctcaggaggta
atttctgtggccctgactctcctcacttcaccattatgttagggtctgaa
gtctcatgactctccctcactttccccgttaaaatataatcttcaaagtg
ctgatacaaaggtaacctgtggagtgcatttgggccacaagtctagagtc
tttatgaatggcttcatgcccagataggaaggcacagttagttttcttcc
atgtgaagactaatgataagagaccactccaaacgtgtggataagctcta
tcagccatgggggctgtaggcactag

tagatataattaaaatacactttatttttttactgtgagtctactttatg
atcttaacaaaagcacatagctctacaacaaggtcatttatcagcacagt
tactttaattaataaggttaaaattatgatgtggaggaaaaactgatagt
gtgcaaatcaagccaactttgtgaaagaatggcatcaaattggagtgaga
tttttggtgatagtattcttatattgacattgatgtgctgtgatgagggg
tcaactacaagagacaaagggccaagtttccacaggaggaaaggaagata
gcgccaaaggggaagcagaatataggagtaattgctactgaaattaggaa
cttcagtttgaaaaggctttcttaattgtacgagttgacttttttagaca
aatttgataaatgacatgcatatgtacactcataagatattgtgcagacc
ttatatacctcagtacaggggaacgccagggccaagaggtggggatgggt
ggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21299546_21300522
seq2: B6Ng01-305K04.b_46_1021 (reverse)

seq1  CTAGTGCCTACAGCCCCCATGGCTGATAGAGCTTATCCACACGTTTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCCTACAGCCCCCATGGCTGATAGAGCTTATCCACACGTTTGGAG  50

seq1  TGGTCTCTTATCATTTAGTCTTCACATGGAAGAAAACTAACTGTGCCTTC  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTTATCA-TTAGTCTTCACATGGAAGAAAACTAACTGTGCCTTC  99

seq1  CTATCTGGGCATGAAGCCATTCATAAAGACTCTAGACTTGTGGCCCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGGGCATGAAGCCATTCATAAAGACTCTAGACTTGTGGCCCAAAT  149

seq1  GCACTCCACAGGTTACCTTTGTATCAGCACTTTGAAGATTATATTTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCACAGGTTACCTTTGTATCAGCACTTTGAAGATTATATTTTAAC  199

seq1  GGGGAAAGTGAGGGAGAGTCATGAGACTTCAGACCCTAACATAATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGTGAGGGAGAGTCATGAGACTTCAGACCCTAACATAATGGTGA  249

seq1  AGTGAGGAGAGTCAGGGCCACAGAAATTACCTCCTGAGAGATGGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAGAGTCAGGGCCACAGAAATTACCTCCTGAGAGATGGAAATCT  299

seq1  ATTATTGCTCTTTTGGTGATGTAAATGTACTACAGGCCAGAGGCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCTCTTTTGGTGATGTAAATGTACTACAGGCCAGAGGCTTCTAG  349

seq1  AAGTTAGAAAATAATTTCTCTCTTTCTTCCTAGGAAGGAACACAGATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAAAATAATTTCTCTCTTTCTTCCTAGGAAGGAACACAGATTAC  399

seq1  TGTTATCTCTGATTTAGACATGTTTTCTAGCGCTGCAGGATGGTGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCTGATTTAGACATGTTTTCTAGCGCTGCAGGATGGTGTGCTT  449

seq1  CTGTTATTTTAAACCAGTTACCCTGTAGTAATTTGTTATAGAAGCAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTTTAAACCAGTTACCCTGTAGTAATTTGTTATAGAAGCAGCTA  499

seq1  GTTAGCAGCATCCTTGTAGTTGATGGCAAATCAACCTGTATTACTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGCATCCTTGTAGTTGATGGCAAATCAACCTGTATTACTGAATT  549

seq1  CTTGGGTTGGACCATTTTTCAACTTTTGGGTGCTATAGTCACATTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTGGACCATTTTTCAACTTTTGGGTGCTATAGTCACATTTTCTG  599

seq1  AGACCCAGAAAGGAGTTGGAATAGGGTAACACCTCTTTACTCTTGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAAGGAGTTGGAATAGGGTAACACCTCTTTACTCTTGTGTCA  649

seq1  GTGTTCTCTGTCTTCTTGCTTTTAAAAGTAGAATTGTAGAGATGCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCTGTCTTCTTGCTTTTAAAAGTAGAATTGTAGAGATGCAATTT  699

seq1  CTTATTTCATATTGGGTTCTACATGTTATTAGAAATCAAATCAGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCATATTGGGTTCTACATGTTATTAGAAATCAAATCAGTTTTTT  749

seq1  TTTTTAACCAACGTTTAACTCAAAATGCCAATAATAACTTCCCACTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCAACGTTTAACTCAAAATGCCAATAATAACTTCCCACTCTAC  799

seq1  TTCTAACAGTGTTTCCTGGTCCTTACAGCCAGTGGTCTACATGAAAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGTGTTTCCTGGTCCTTACAGCCAGTGGTCTACATGAAAGCAA  849

seq1  AATTACTCCTAGGTTAGAACCAGTTGGCTACAACAATTAGCACTTCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCCTAGGTTAGAACCAGTTGGCTACAACAATTAGCACTTCAGAC  899

seq1  AGTCTATCTGCCACAAGACCCCATTTATAGGAGACAGGCTTCCACAGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCTGCCACAAGACCCCATTTATAGGAGACAGGCTTCCACAGTGC  949

seq1  AACTATGTGAGGAACATCTAAGAATTC  977
      |||||||||||||||||||||||||||
seq2  AACTATGTGAGGAACATCTAAGAATTC  976


seq1: chr6_21221323_21221836
seq2: B6Ng01-305K04.g_68_581

seq1  GAATTCTAGATATAATTAAAATACACTTTATTTTTTTACTGTGAGTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATATAATTAAAATACACTTTATTTTTTTACTGTGAGTCTAC  50

seq1  TTTATGATCTTAACAAAAGCACATAGCTCTACAACAAGGTCATTTATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCTTAACAAAAGCACATAGCTCTACAACAAGGTCATTTATCAG  100

seq1  CACAGTTACTTTAATTAATAAGGTTAAAATTATGATGTGGAGGAAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTACTTTAATTAATAAGGTTAAAATTATGATGTGGAGGAAAAACT  150

seq1  GATAGTGTGCAAATCAAGCCAACTTTGTGAAAGAATGGCATCAAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTGCAAATCAAGCCAACTTTGTGAAAGAATGGCATCAAATTGGA  200

seq1  GTGAGATTTTTGGTGATAGTATTCTTATATTGACATTGATGTGCTGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTTTTGGTGATAGTATTCTTATATTGACATTGATGTGCTGTGAT  250

seq1  GAGGGGTCAACTACAAGAGACAAAGGGCCAAGTTTCCACAGGAGGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCAACTACAAGAGACAAAGGGCCAAGTTTCCACAGGAGGAAAGG  300

seq1  AAGATAGCGCCAAAGGGGAAGCAGAATATAGGAGTAATTGCTACTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCGCCAAAGGGGAAGCAGAATATAGGAGTAATTGCTACTGAAAT  350

seq1  TAGGAACTTCAGTTTGAAAAGGCTTTCTTAATTGTACGAGTTGACTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTTCAGTTTGAAAAGGCTTTCTTAATTGTACGAGTTGACTTTTT  400

seq1  TAGACAAATTTGATAAATGACATGCATATGTACACTCATAAGATATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAATTTGATAAATGACATGCATATGTACACTCATAAGATATTGTG  450

seq1  CAGACCTTATATACCTCAGTACAGGGGAACGCCAGGGCCAAGAGGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTATATACCTCAGTACAGGGGAACGCCAGGGCCAAGAGGTGGGG  500

seq1  ATGGGTGGGGGGGA  514
      ||||||||||||||
seq2  ATGGGTGGGGGGGA  514


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