BAC Information

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BAC

Clone NameB6Ng01-307L20
Chromosome6 (Build37)3 (Build37)
Map Location 116,950,636 - 116,950,67971,875,506 - 71,876,638
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L20.bB6Ng01-307L20.g
ACCGA100433GA100434
length2101,153
definitionB6Ng01-307L20.b B6Ng01-307L20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,950,636 - 116,950,679)(71,875,506 - 71,876,638)
sequence
gaattcaatgaaaataaaggtacaaaatatccaaatgcatgggaaacaac
taaagtagtgctaagaggaaagtccattgtactaagtccttcataaagaa
actagaaagctcttataccagcaatttaaaagtatacctaaaatctctag
gaaaagaagaaagaagaaggaggaggaggagggaaaggggaagaagggga
aggggaagag
gaattctttaactcaaagtatcagagagtaagaattgttagcatgcttgt
tacatactttgcttcttgattttgagaagaatggattccaacccttgatt
aattaggtattttgaatgactcaggtaagctgctgagagtttgcttactc
atttcttaatcacttaattgttttatttatttacattccaaatgctgctt
cttttaaaaatctcccctcctgtctgtctcttctcatacctcatcctgcc
cactcttctcagctgcctctcctccctccctctacgcccccccccaccac
atgtttgtgtcctattaaaggaaaagttattgcttcatataatagatgcc
atgctaaaataatattcacataaattacttagaacagtctttggcaaaag
aacatggcttataattttgtgttaaggatatgagtatggttgagtaaaag
tagttcctatggggaaaaaagatgaatagtacaaaataaatcaataatta
accaacaccattaaaagcatattcatacattaggattaatgaataattgt
attattgtatagagttgcatttattttttatgtatgcatgtaattctcac
acccttcttagaatgacaaagcaaagggtcactgagagttaacagtttct
tattttaaattcattcatatgaattgcttttgtcatgtaagtggagaaaa
ttgttttataataagatgtgatttaaattaaaatgagactaggttctaat
atcacctttctggagttttggaaaaaatcatgttaaatgttattatgtct
taagttatcaatctaatcatcataatattttttgacaacttgggtattct
caggcagaagttgattatgtatttcatttattaagtaaaggactaacgaa
tcaggaagtagtcacattcccatgtcatggatatcaaaggtgactgtgct
gtacaaataaaggcagggacaaacacatcaaagtcagaaaccctttcata
gagactttagcctctgtagtgctgggcatctgctgcaccagttttagttt
tgtgattattgtcccatttttatactttctctcttgttctagaacctaga
agcttcaaagaataggttccgactatgtattggaacaggattgatatagt
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116950636_116950679
seq2: B6Ng01-307L20.b_208_251

seq1  GAAGGAAAGGAG--GGAGGGAAAGGGGAAGAAGGGGAAGGGGAAGA  44
      |||||  |||||  ||||||||||||||||||||||||||||||||
seq2  GAAGG--AGGAGGAGGAGGGAAAGGGGAAGAAGGGGAAGGGGAAGA  44

seq1: chr3_71875506_71876638
seq2: B6Ng01-307L20.g_66_1218 (reverse)

seq1  GTTACTATATCA--TCTG-TCCAAT-CATAGTCGGA--CTTATCTTTG-A  43
      ||||||||||||   ||| |||||| ||||||||||  ||  |||||| |
seq2  GTTACTATATCAATCCTGTTCCAATACATAGTCGGAACCTATTCTTTGAA  50

seq1  GC-TCTA-GTTCTAG----ACAGAG-AAGTAT-AAAATGGGAC-ATAACC  84
      || |||| |||||||    | |||| |||||| |||||||||| |||| |
seq2  GCTTCTAGGTTCTAGAACAAGAGAGAAAGTATAAAAATGGGACAATAATC  100

seq1  ACAAAACT-AAACTGGTTGCAGCAGATG-CCAGCACTACAGA-GCTAAAG  131
      |||||||| ||||||| ||||||||||| ||||||||||||| |||||||
seq2  ACAAAACTAAAACTGG-TGCAGCAGATGCCCAGCACTACAGAGGCTAAAG  149

seq1  TCTCTATGAAA-GGTTTCTGACTTTGATGTGTTTGTCCCTGCCTTTATTT  180
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TCTCTATGAAAGGGTTTCTGACTTTGATGTGTTTGTCCCTGCCTTTA-TT  198

seq1  TGTACAGCACAGTCACC-TTGATATCCATGACATGGGAATGTGACTACTT  229
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTACAGCACAGTCACCTTTGATATCCATGACATGGGAATGTGACTACTT  248

seq1  CCTGATTCGTTAGTCCTTTACTTAATAAATGAAATACATAATCAACTTCT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCGTTAGTCCTTTACTTAATAAATGAAATACATAATCAACTTCT  298

seq1  GCCTGAGAATACCCAAGTTGTC-AAAAATATTATGATGATTAGATTGATA  328
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTGAGAATACCCAAGTTGTCAAAAAATATTATGATGATTAGATTGATA  348

seq1  ACTTAAGACATAATAACATTTAACATGATTTTTTCCAAAACTCCAGAAAG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGACATAATAACATTTAACATGATTTTTTCCAAAACTCCAGAAAG  398

seq1  GTGATATTAGAACCTAGTCTCATTTTAATTTAAATCACATCTTATTATAA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTAGAACCTAGTCTCATTTTAATTTAAATCACATCTTATTATAA  448

seq1  AACAATTTTCTCCACTTACATGACAAAAGCAATTCATATGAATGAATTTA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTCTCCACTTACATGACAAAAGCAATTCATATGAATGAATTTA  498

seq1  AAATAAGAAACTGTTAACTCTCAGTGACCCTTTGCTTTGTCATTCTAAGA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAACTGTTAACTCTCAGTGACCCTTTGCTTTGTCATTCTAAGA  548

seq1  AGGGTGTGAGAATTACATGCATACATAAAAAATAAATGCAACTCTATACA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGAGAATTACATGCATACATAAAAAATAAATGCAACTCTATACA  598

seq1  ATAATACAATTATTCATTAATCCTAATGTATGAATATGCTTTTAATGGTG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAATTATTCATTAATCCTAATGTATGAATATGCTTTTAATGGTG  648

seq1  TTGGTTAATTATTGATTTATTTTGTACTATTCATCTTTTTTCCCCATAGG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATTATTGATTTATTTTGTACTATTCATCTTTTTTCCCCATAGG  698

seq1  AACTACTTTTACTCAACCATACTCATATCCTTAACACAAAATTATAAGCC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTTACTCAACCATACTCATATCCTTAACACAAAATTATAAGCC  748

seq1  ATGTTCTTTTGCCAAAGACTGTTCTAAGTAATTTATGTGAATATTATTTT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTTGCCAAAGACTGTTCTAAGTAATTTATGTGAATATTATTTT  798

seq1  AGCATGGCATCTATTATATGAAGCAATAACTTTTCCTTTAATAGGACACA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCATCTATTATATGAAGCAATAACTTTTCCTTTAATAGGACACA  848

seq1  AACATGTGGTGGGGGGGGGCGTAGAGGGAGGGAGGAGAGGCAGCTGAGAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGGTGGGGGGGGGCGTAGAGGGAGGGAGGAGAGGCAGCTGAGAA  898

seq1  GAGTGGGCAGGATGAGGTATGAGAAGAGACAGACAGGAGGGGAGATTTTT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCAGGATGAGGTATGAGAAGAGACAGACAGGAGGGGAGATTTTT  948

seq1  AAAAGAAGCAGCATTTGGAATGTAAATAAATAAAACAATTAAGTGATTAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCAGCATTTGGAATGTAAATAAATAAAACAATTAAGTGATTAA  998

seq1  GAAATGAGTAAGCAAACTCTCAGCAGCTTACCTGAGTCATTCAAAATACC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTAAGCAAACTCTCAGCAGCTTACCTGAGTCATTCAAAATACC  1048

seq1  TAATTAATCAAGGGTTGGAATCCATTCTTCTCAAAATCAAGAAGCAAAGT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATCAAGGGTTGGAATCCATTCTTCTCAAAATCAAGAAGCAAAGT  1098

seq1  ATGTAACAAGCATGCTAACAATTCTTACTCTCTGATACTTTGAGTTAAAG  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAAGCATGCTAACAATTCTTACTCTCTGATACTTTGAGTTAAAG  1148

seq1  AATTC  1133
      |||||
seq2  AATTC  1153