BAC Information

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BAC

Clone NameB6Ng01-308C21
Chromosome6 (Build37)
Map Location 44,311,239 - 44,312,375
singlet/doubletsinglet
Overlap genenone
Upstream geneTpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308C21.bB6Ng01-308C21.g
ACCGA100749GA100750
length1,135702
definitionB6Ng01-308C21.b B6Ng01-308C21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactaagaaacgcctccacaaaaatgccccaaaggccaatct
gtagtgcatttttgggggtgtgtggaagtgctcagtcattatggatggtg
ccatcgctagcctggtggtccagaattctgtaagaaagtattatcagcaa
gctagtaagaaaaaactaaacgaagaaaagttaagatttctataagcagt
tatggtgttatccttcaccaaaagttttgaaatattaagaagctcttagc
tttttgtttgccaaacttttactgtcatttccactgaaaggctattgtat
gaatttccatactgggtgcacacaaagatgaaatctttgtggactgggtg
ggaaagttcctggcaaaattctctttttcccctaatatgggtatgcctcg
ggtagattctataattgtgctgctttcattgggtgggataagcttagcct
tcctggggccaagttttccacatttaagtctgattcaggaccgacatctt
aaatacatgggatcttcattctatcctttaattccaatattgtaaaatca
catcatgacagtgttgtaccacatttaatcaggaagcgattacacggaac
tttcagtcagtgcctccttagggaataaaggaatcaaggaagatagtttc
ctagtttatttagacactagtataatacaatatagcaataacaaaataaa
aagcaattaactaagtgccacacaaattgagatacaaatattgggtagac
tattttaaaattagtacatgattactaaatttaaaaacatataatatagg
acttaactctaagagataataataatggcatgaactattacttaccagac
aaagcaaaacttactagaaggtttgagcatagtttggggaaacctttgtt
tctcaagatatgaaataagagtttaattgtcataaataacacagcatggt
taacataagactgatgaaaaatgtaacattagtctagatatgagatgaaa
actcacattgaatacttaaaataagagctttctgtgctgagtcactaaac
tggaacgtgaatagcctccacttagtatagaagaagggtctttaagaaaa
aggtgaactcaaggaactggtaatgaaccttgtgt

gaattctaaacaggaatcttgaatggccaagaagcactttaaaaatgtgc
aacatccttagtcatcaaggaaatgcaaatcaaaatgattctgagatccc
accttacaccagtcagcatggttaagataagaaactcatggaacaaggga
agtcatccttgactgttgatgagtgtacaagtttgtacaaccactttgga
aatcagtctagtggttcctaagaaaattgggtattcccatcaagatccag
ctattccactcctaggcatatacccaaagtgtactccacagtaccccaag
tacatgtactctgctatgttcatagcagctttattcatagtagttagaaa
ctggaaacaacccagatgtccttcagctgaatagtggatacagaaaatat
actttgtttatacaacagaatactgctcaactattaaaaccaaggatatc
ataaattttgcaggcaaatgaatggaactagaaagcatcatccaatataa
gatattccagacccaaaaggacatgcatagtatgtactcatttataagtg
gatattagaaaaagggtacagaatactcattatatattctacagacccca
aaaactgaacaaaaagaaaagtctgtgtgaggatgcttatatctcattta
gaatggggaataaaatagttgtaggaggttaatggagggagggagctggg
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44311239_44312375
seq2: B6Ng01-308C21.b_44_1178

seq1  GAATTCTCAACTAAGAAACGCCTCCACAAAAATGCCCCAAAGGCCAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTAAGAAACGCCTCCACAAAAATGCCCCAAAGGCCAATCT  50

seq1  GTAGTGCATTTTTGGGGGTGTGTGGAAGTGCTCAGTCATTATGGATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCATTTTTGGGGGTGTGTGGAAGTGCTCAGTCATTATGGATGGTG  100

seq1  CCATCGCTAGCCTGGTGGTCCAGAATTCTGTAAGAAAGTATTATCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGCTAGCCTGGTGGTCCAGAATTCTGTAAGAAAGTATTATCAGCAA  150

seq1  GCTAGTAAGAAAAAACTAAACGAAGAAAAGTTAAGATTTCTATAAGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAAGAAAAAACTAAACGAAGAAAAGTTAAGATTTCTATAAGCAGT  200

seq1  TATGGTGTTATCCTTCACCAAAAGTTTTGAAATATTAAGAAGCTCTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTTATCCTTCACCAAAAGTTTTGAAATATTAAGAAGCTCTTAGC  250

seq1  TTTTTGTTTGCCAAACTTTTACTGTCATTTCCACTGAAAGGCTATTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGCCAAACTTTTACTGTCATTTCCACTGAAAGGCTATTGTAT  300

seq1  GAATTTCCATACTGGGTGCACACAAAGATGAAATCTTTGTGGACTGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCATACTGGGTGCACACAAAGATGAAATCTTTGTGGACTGGGTG  350

seq1  GGAAAGTTCCTGGCAAAATTCTCTTTTTCCCCTAATATGGGTATGCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTCCTGGCAAAATTCTCTTTTTCCCCTAATATGGGTATGCCTCG  400

seq1  GGTAGATTCTATAATTGTGCTGCTTTCATTGGGTGGGATAAGCTTAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTCTATAATTGTGCTGCTTTCATTGGGTGGGATAAGCTTAGCCT  450

seq1  TCCTGGGGCCAAGTTTTCCACATTTAAGTCTGATTCAGGACCGACATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCCAAGTTTTCCACATTTAAGTCTGATTCAGGACCGACATCTT  500

seq1  AAATACATGGGATCTTCATTCTATCCTTTAATTCCAATATTGTAAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGGGATCTTCATTCTATCCTTTAATTCCAATATTGTAAAATCA  550

seq1  CATCATGACAGTGTTGTACCACATTTAATCAGGAAGCGATTACACGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACAGTGTTGTACCACATTTAATCAGGAAGCGATTACACGGAAC  600

seq1  TTTCAGTCAGTGCCTCCTTAGGGAATAAAGGAATCAAGGAAGATAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCAGTGCCTCCTTAGGGAATAAAGGAATCAAGGAAGATAGTTTC  650

seq1  CTAGTTTATTTAGACACTAGTATAATACAATATAGCAATAACAAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATTTAGACACTAGTATAATACAATATAGCAATAACAAAATAAA  700

seq1  AAGCAATTAACTAAGTGCCACACAAATTGAGATACAAATATTGGGTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTAACTAAGTGCCACACAAATTGAGATACAAATATTGGGTAGAC  750

seq1  TATTTTAAAATTAGTACATGATTACTAAATTTAAAAACATATAATATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATTAGTACATGATTACTAAATTTAAAAACATATAATATAGG  800

seq1  ACTTAACTCTAAGAGATAATAATAATGGCATGAACTATTACTTACCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTCTAAGAGATAATAATAATGGCATGAACTATTACTTACCAGAC  850

seq1  AAAGCAAAACTTACTAGAAGGTTTGAGCATAGTTTGGGGAAACCTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAACTTACTAGAAGGTTTGAGCATAGTTTGGGGAAACCTTTGTT  900

seq1  TCTCAAGATATGAAATAAGAGTTTAATTGTCATAAATAACACAGCATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATATGAAATAAGAGTTTAATTGTCATAAATAACACAGCATGGT  950

seq1  TAACATAAGACTGATGAAAAATGTAACATTAGTCTAAGATAATGAGATGA  1000
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  TAACATAAGACTGATGAAAAATGTAACATTAGTCT-AGAT-ATGAGATGA  998

seq1  AAACTCACATTGAATAACTTAAAATAAGAGCTTTCTGTTGCTGAGTCACT  1050
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  AAACTCACATTGAAT-ACTTAAAATAAGAGCTTTCTG-TGCTGAGTCACT  1046

seq1  AAACTGGAACGTG-ATAG-CTCAACTAAGTATAGAAGGAAGGGGGTCCTT  1098
      ||||||||||||| |||| ||| ||| |||||||||| |   ||||| ||
seq2  AAACTGGAACGTGAATAGCCTCCACTTAGTATAGAAGAA---GGGTCTTT  1093

seq1  A--GAAAAGGTGACCCAGGGGACCTGGTAATGAACC-TGTGT  1137
      |   ||||||||| |    ||| ||||||||||||| |||||
seq2  AAGAAAAAGGTGAACTCAAGGAACTGGTAATGAACCTTGTGT  1135


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