BAC Information

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BAC

Clone NameB6Ng01-308G18
Chromosome6 (Build37)
Map Location 80,165,451 - 80,276,928
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621815, LOC100043392, Lrrtm4
Downstream geneLOC100043390, LOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308G18.bB6Ng01-308G18.g
ACCGA100929GA100930
length6741,167
definitionB6Ng01-308G18.b B6Ng01-308G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,165,451 - 80,166,122)(80,275,756 - 80,276,928)
sequence
gaattcattacatctactgaaagaaggatggatacatgactcctcaggtt
aagcatcttccaaagacaattgtttcatatttctaatgcttacaaattga
aaacctattttttaaaatgttgacactacatcggttcctacagcatagag
agatgctagaggggtggggcagtagtgagtaagtgggtggaggagcagcc
tcatacaggcaaaagggagagggaagagggggaatgagatgacgggattg
tcgagtggtgtctgggaagggataccactttatctcaaaaccatcacttg
aaatgtaaacgaaaaaaaaatgagtaataaaaagtatttgcgtaatgttt
ctctggcctttcaactctcctgaatgaaaccatgaatgttcctttcatct
atgatatctatgatctagcttacaacactaccatcttggtattcctggct
tgcctcacgtatttccagcaacattacaaggcatcatgattagcatggcc
tccattctcttgcacccaaacccaacatgcacccctttcatcagcaggca
ttttacctgtttttccttccagatgttttctccagtcagtatgtggtgat
ttttaaaaacttttctttttcttttttcttttcttggtttatcactctgg
gctttaggaaactgaatgtccatt
gaattcctgagccagctgttcagagaagcaagttttcatttcagatgata
aaacatatgacattggatataaaactgtaatggagggagcatccagaata
ttggatgttctgaaaagtaccaagagtaaattagatgtcaactttaagaa
atgttttagaaactatcacaaagaaagaacaagtgaacattaattttgag
agcaagcaaggcacaggagtataacttgaaatacattgtagtatagattg
gcataaggcctgagatgaaaaccaataatcaataacaatataaaatgagt
tttctgtactagataaatatttagttagaaaataaaaactgcttaaaaat
gtccaagaaacataatcatagtaattaaaatttgccattttatctacaaa
atatcttatttcacaagggcaaagttaatgataaaaagttatttgagcat
ttataggaaaggaacgcatatcaagctcataaggatgtctgtggaataga
gttttcttgcacatcacatagagccctacacatagttcaactgacataag
aataatgtatgttcatggttgttcttgttgtttcaatctgtaatacatga
ttacaggacactggaatgcaagacctttgaaaagccattgaagaaaacaa
catgaaaaaaactttgctaaaatgtactccaatgactatgaacttaatct
aataaaacataaacagtgataaaaaaatgaaagttaatcagtaaaatgtt
ctgttttgcaaattaataagtagttctcttttttcccattgtttcttctt
aatacaattaaaatcagaagagggtcaacaagatgactcaatacgcaaag
cacctgccaccaagtctgatgatccaatcctgagatatacatgtttgatg
gaaataatctattcaagttatcattcacacatccagacattattgtagcc
tatacctgcacacacataagcagtaaaaataaaatacttttaaaacagtg
gctagaaagcagtcatatgtacgttgacatctatgcaagcatagagcttc
ttatatttagatctcatgctgaacagtactaccacaaactacaggagcag
agcaaaaagatagctactctttctggacctgtcagaattaaaagggtgcc
attaaggggcaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80165451_80166122
seq2: B6Ng01-308G18.b_44_717

seq1  GAATTCATTACATCTACTGAAAGAAGGATGGATACATGACTCCTCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATCTACTGAAAGAAGGATGGATACATGACTCCTCAGGTT  50

seq1  AAGCATCTTCCAAAGACAATTGTTTCATATTTCTAATGCTTACAAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCCAAAGACAATTGTTTCATATTTCTAATGCTTACAAATTGA  100

seq1  AAACCTATTTTTTAAAATGTTGACACTACATCGGTTCCTACAGCATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTTTTAAAATGTTGACACTACATCGGTTCCTACAGCATAGAG  150

seq1  AGATGCTAGAGGGGTGGGGCAGTAGTGAGTAAGTGGGTGGAGGAGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAGAGGGGTGGGGCAGTAGTGAGTAAGTGGGTGGAGGAGCAGCC  200

seq1  TCATACAGGCAAAAGGGAGAGGGAAGAGGGGGAATGAGATGACGGGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGCAAAAGGGAGAGGGAAGAGGGGGAATGAGATGACGGGATTG  250

seq1  TCGAGTGGTGTCTGGGAAGGGATACCACTTTATCTCAAAACCATCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGGTGTCTGGGAAGGGATACCACTTTATCTCAAAACCATCACTTG  300

seq1  AAATGTAAACGAAAAAAAAATGAGTAATAAAAAGTATTTGCGTAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAACGAAAAAAAAATGAGTAATAAAAAGTATTTGCGTAATGTTT  350

seq1  CTCTGGCCTTTCAACTCTCCTGAATGAAACCATGAATGTTCCTTTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTTTCAACTCTCCTGAATGAAACCATGAATGTTCCTTTCATCT  400

seq1  ATGATATCTATGATCTAGCTTACAACACTACCATCTTGGTATTCCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTATGATCTAGCTTACAACACTACCATCTTGGTATTCCTGGCT  450

seq1  TGCCTCACGTATTTCCAGCAACATTACAAGGCATCATGATTAGCATGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACGTATTTCCAGCAACATTACAAGGCATCATGATTAGCATGGCC  500

seq1  TCCATTCTCTTGCACCCAAACCCAACATGCACCCCTTTCATCAGCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCTTGCACCCAAACCCAACATGCACCCCTTTCATCAGCAGGCA  550

seq1  TTTTACCTGTTTTTCCTTCCAGATGTTTTCTCCAGTCAGTATGTGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTGTTTTTCCTTCCAGATGTTTTCTCCAGTCAGTATGTGGTGAT  600

seq1  TTTTAAAAACTTTTCTTTTTC-TTTTTCTTTTCTTGGTTTATCACTCT-G  648
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TTTTAAAAACTTTTCTTTTTCTTTTTTCTTTTCTTGGTTTATCACTCTGG  650

seq1  GCTTTAGGAAACTGAATGTCCATT  672
      ||||||||||||||||||||||||
seq2  GCTTTAGGAAACTGAATGTCCATT  674

seq1: chr6_80275756_80276928
seq2: B6Ng01-308G18.g_67_1233 (reverse)

seq1  TTTTCT---GCCTTAAT-GCACCTTTTTA--TCTGACATGTCAGAAAAGA  44
      ||||||    ||||||| ||||| |||||  ||||||| |||   |||||
seq2  TTTTCTTGCCCCTTAATGGCACCCTTTTAATTCTGACAGGTCCAGAAAGA  50

seq1  GTAGGCTTATCTTTTTGCTCTGCTCCCTGGTATTTTTGTGTTAGTAACTT  94
      ||||   |||||||||||||||||||   |||  |||||| |||||   |
seq2  GTAG--CTATCTTTTTGCTCTGCTCC--TGTA-GTTTGTGGTAGTA--CT  93

seq1  GTTCAGCATGAGATCTAAAATATAAGAAGGCTCTATGCTTTGCATTAGAT  144
      |||||||||||||||| ||||||||||| ||||||||| ||||| |||||
seq2  GTTCAGCATGAGATCT-AAATATAAGAA-GCTCTATGC-TTGCA-TAGAT  139

seq1  GTCAACGTACATATGACTGCTTTCTAGCCACTGTTTTTAAAAGTATTTTA  194
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCAACGTACATATGACTGCTTTCTAGCCACTG-TTTTAAAAGTATTTTA  188

seq1  TTTTTACTGCTTATGTGTGTGCAGGTATAGGCTACAATAATGTCTGGATG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGCTTATGTGTGTGCAGGTATAGGCTACAATAATGTCTGGATG  238

seq1  TGTGAATGATAACTTGAATAGATTATTTCCATCAAACATGTATATCTCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGATAACTTGAATAGATTATTTCCATCAAACATGTATATCTCAG  288

seq1  GATTGGATCATCAGACTTGGTGGCAGGTGCTTTGCGTATTGAGTCATCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATCATCAGACTTGGTGGCAGGTGCTTTGCGTATTGAGTCATCTT  338

seq1  GTTGACCCTCTTCTGATTTTAATTGTATTAAGAAGAAACAATGGGAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCCTCTTCTGATTTTAATTGTATTAAGAAGAAACAATGGGAAAAA  388

seq1  AGAGAACTACTTATTAATTTGCAAAACAGAACATTTTACTGATTAACTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTACTTATTAATTTGCAAAACAGAACATTTTACTGATTAACTTT  438

seq1  CATTTTTTTATCACTGTTTATGTTTTATTAGATTAAGTTCATAGTCATTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTATCACTGTTTATGTTTTATTAGATTAAGTTCATAGTCATTG  488

seq1  GAGTACATTTTAGCAAAGTTTTTTTCATGTTGTTTTCTTCAATGGCTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATTTTAGCAAAGTTTTTTTCATGTTGTTTTCTTCAATGGCTTTT  538

seq1  CAAAGGTCTTGCATTCCAGTGTCCTGTAATCATGTATTACAGATTGAAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCTTGCATTCCAGTGTCCTGTAATCATGTATTACAGATTGAAAC  588

seq1  AACAAGAACAACCATGAACATACATTATTCTTATGTCAGTTGAACTATGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAACAACCATGAACATACATTATTCTTATGTCAGTTGAACTATGT  638

seq1  GTAGGGCTCTATGTGATGTGCAAGAAAACTCTATTCCACAGACATCCTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTCTATGTGATGTGCAAGAAAACTCTATTCCACAGACATCCTTA  688

seq1  TGAGCTTGATATGCGTTCCTTTCCTATAAATGCTCAAATAACTTTTTATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGATATGCGTTCCTTTCCTATAAATGCTCAAATAACTTTTTATC  738

seq1  ATTAACTTTGCCCTTGTGAAATAAGATATTTTGTAGATAAAATGGCAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTTGCCCTTGTGAAATAAGATATTTTGTAGATAAAATGGCAAAT  788

seq1  TTTAATTACTATGATTATGTTTCTTGGACATTTTTAAGCAGTTTTTATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACTATGATTATGTTTCTTGGACATTTTTAAGCAGTTTTTATTT  838

seq1  TCTAACTAAATATTTATCTAGTACAGAAAACTCATTTTATATTGTTATTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAAATATTTATCTAGTACAGAAAACTCATTTTATATTGTTATTG  888

seq1  ATTATTGGTTTTCATCTCAGGCCTTATGCCAATCTATACTACAATGTATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGTTTTCATCTCAGGCCTTATGCCAATCTATACTACAATGTATT  938

seq1  TCAAGTTATACTCCTGTGCCTTGCTTGCTCTCAAAATTAATGTTCACTTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTATACTCCTGTGCCTTGCTTGCTCTCAAAATTAATGTTCACTTG  988

seq1  TTCTTTCTTTGTGATAGTTTCTAAAACATTTCTTAAAGTTGACATCTAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTGTGATAGTTTCTAAAACATTTCTTAAAGTTGACATCTAAT  1038

seq1  TTACTCTTGGTACTTTTCAGAACATCCAATATTCTGGATGCTCCCTCCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTGGTACTTTTCAGAACATCCAATATTCTGGATGCTCCCTCCAT  1088

seq1  TACAGTTTTATATCCAATGTCATATGTTTTATCATCTGAAATGAAAACTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTATATCCAATGTCATATGTTTTATCATCTGAAATGAAAACTT  1138

seq1  GCTTCTCTGAACAGCTGGCTCAGGAATTC  1173
      |||||||||||||||||||||||||||||
seq2  GCTTCTCTGAACAGCTGGCTCAGGAATTC  1167