BAC Information

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BAC

Clone NameB6Ng01-309H11
Chromosome6 (Build37)1 (Build37)
Map Location 83,957,451 - 83,957,613143,325,816 - 143,326,964
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml
Downstream geneDysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309H11.bB6Ng01-309H11.g
ACCGA101701GA101702
length9671,162
definitionB6Ng01-309H11.b B6Ng01-309H11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,957,451 - 83,957,613)(143,325,816 - 143,326,964)
sequence
gaattcccaggctatttttacaacttggttttcaagaataatatcacagt
gaacatcggaatgaacttatcctctcaatatacttaaatattcaggaatg
gtggaattgaattctaaggtagctgtagttcaaggattgtttgttttgtt
ttgatttgtttttttattttgatttattcattttatatcttgctcactgc
tcctccccccagtcacaccttcctgcaatccttccttccattttgcatcc
ccttctccagtgagcaaaggaggctcctctggatatccccctaccctgtc
acatcaagtctctgcaaacctgagtgtatcctctccctgaggccagaaaa
ggtagccaaggtagaagaatatatcccacagacaaggaataaattttggt
atagccctgtgtgaggagcgggtgtggctgcagtcccaaaggcgccaggg
actgcagctaagtcgtatgtcttgcacctgacttcctcatataagccaca
aacatcttgagagctgcgcaggtgtaccaggataccgagtgaattcattt
tgatggagatatgcccctgctgccctgattagctgaagctacgtgcctgg
tgaggtggcgtggcctgctgtgtatggatgggaactgagagtataaaaga
gtgagaggcccagggttcgggagagatataaacaagggagatataaacaa
gggagatatgtaaacaagggagatataaacaagggagatataaacaagaa
gaaacaggactgaataaacgtgtgcagcagatcctgttgcagtgtcgttc
ttcctggccagttgggcgcgcgcaagagccctgctccagttgtttgggac
ccacatgaagaccaagctactacatatgtgcaggagtgagggggtaggtc
cagcaggttaatgctccttggtttggaggatctgtctctgaaatctcaaa
gggtctaaagttagttg
gaattcttctttaatcatacttgctttgttatgttgctaacaaaaataaa
aagaaacttaccacaagaatattgatttcttaggttagaactacattgtg
aaatgttaaaaatttgaatatttttcctttacctcctaatatttctataa
acttccataataattgttttatgagtattattaaacatacataattattt
ttcatataacttacttaaaatatacatatatgaatgctctttctggggat
atgttaaacatcattagtttttttaataacattaaattaccataggaaag
cagttaaatcagaagttggtttatatagctctcctacacaaaatagaaaa
aatgtaacataaaaaataaatgaattcatgtaagaaaggtaaacaaaaaa
aataagtacttctatgtaatttggtgtatgtatgaaaatgtattcattaa
tttgctataaaagaactactttaaaaagtatcttaatatgtgacaaggaa
ttgacctttaaatgtacttaatttatgactttcttttttcatcgctggat
ggcttctactctttttacactcatccaaaagtagtcctggaacaaagccc
agccacagccgccaaatttgaaatattatctctaaaaatggaattctagt
aggaggaataggtttgatgaatgaaagacagtcacagacttagacggttg
acaatgagtcattgctagcagaagtagaaaagaaaaacttagaagaactc
acaaaggaacagatttagaaagttattgaaatcgtcctgaaattccagta
aacacaaaaatattaccttaagaaatatgtggaaataattgctgagaaag
acaaaagccaaacccacacacaaaccaaaccaaaccaaaacaaccagaaa
gaccttctggtgatttgaatgagctgatccatccatccccctgcagtctt
gggcatgtgagtatttgatttccaagttgttagcagtttgggaggagatt
tgggaaggatggcccttgctagaggagtatgtcacccggagagtgctgtt
aggctttctaagactcagcacaatactgagttctgacatctgacagtctg
cctggtggaatagtgatgagaagctctcagcttctgggtgccaacgtgtg
tcctttggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83957451_83957613
seq2: B6Ng01-309H11.b_540_703

seq1  CACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATTCAG-GTGAATCC  49
      ||||||||||||||| ||||||||||||||||||||| | | |||||| |
seq2  CACAAACATCTTGAGAGCTGCGCAGGTGTACCAGGATACCGAGTGAATTC  50

seq1  AATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGC  99
      | |||| ||||||| ||||||||||||||||||||||||||||| |||||
seq2  ATTTTGATGGAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTACGTGC  100

seq1  CTGGTGAGGTGGCGTGGTCTGCTGTGCGTGGATGTGAACTGAGAGTATAG  149
      ||||||||||||||||| ||||||||  |||||| |||||||||||||| 
seq2  CTGGTGAGGTGGCGTGGCCTGCTGTGTATGGATGGGAACTGAGAGTATAA  150

seq1  AAGAGTGAGAGGCC  163
      ||||||||||||||
seq2  AAGAGTGAGAGGCC  164

seq1: chr1_143325816_143326964
seq2: B6Ng01-309H11.g_67_1228

seq1  GAATTCTTCTTTAATCATACTTGCTTTGTTATGTTGCTAACAAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTAATCATACTTGCTTTGTTATGTTGCTAACAAAAATAAA  50

seq1  AAGAAACTTACCACAAGAATATTGATTTCTTAGGTTAGAACTACATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTACCACAAGAATATTGATTTCTTAGGTTAGAACTACATTGTG  100

seq1  AAATGTTAAAAATTTGAATATTTTTCCTTTACCTCCTAATATTTCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAAAATTTGAATATTTTTCCTTTACCTCCTAATATTTCTATAA  150

seq1  ACTTCCATAATAATTGTTTTATGAGTATTATTAAACATACATAATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATAATAATTGTTTTATGAGTATTATTAAACATACATAATTATTT  200

seq1  TTCATATAACTTACTTAAAATATACATATATGAATGCTCTTTCTGGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAACTTACTTAAAATATACATATATGAATGCTCTTTCTGGGGAT  250

seq1  ATGTTAAACATCATTAGTTTTTTTAATAACATTAAATTACCATAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAACATCATTAGTTTTTTTAATAACATTAAATTACCATAGGAAAG  300

seq1  CAGTTAAATCAGAAGTTGGTTTATATAGCTCTCCTACACAAAATAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAATCAGAAGTTGGTTTATATAGCTCTCCTACACAAAATAGAAAA  350

seq1  AATGTAACATAAAAAATAAATGAATTCATGTAAGAAAGGTAAACAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACATAAAAAATAAATGAATTCATGTAAGAAAGGTAAACAAAAAA  400

seq1  AATAAGTACTTCTATGTAATTTGGTGTATGTATGAAAATGTATTCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTACTTCTATGTAATTTGGTGTATGTATGAAAATGTATTCATTAA  450

seq1  TTTGCTATAAAAGAACTACTTTAAAAAGTATCTTAATATGTGACAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATAAAAGAACTACTTTAAAAAGTATCTTAATATGTGACAAGGAA  500

seq1  TTGACCTTTAAATGTACTTAATTTATGACTTTCTTTTTTCATCGCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTTAAATGTACTTAATTTATGACTTTCTTTTTTCATCGCTGGAT  550

seq1  GGCTTCTACTCTTTTTACACTCATCCAAAAGTAGTCCTGGAACAAAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTACTCTTTTTACACTCATCCAAAAGTAGTCCTGGAACAAAGCCC  600

seq1  AGCCACAGCCGCCAAATTTGAAATATTATCTCTAAAAATGGAATTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCCGCCAAATTTGAAATATTATCTCTAAAAATGGAATTCTAGT  650

seq1  AGGAGGAATAGGTTTGATGAATGAAAGACAGTCACAGACTTAGACGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAATAGGTTTGATGAATGAAAGACAGTCACAGACTTAGACGGTTG  700

seq1  ACAATGAGTCATTGCTAGCAGAAGTAGAAAAGAAAAACTTAGAAGAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGTCATTGCTAGCAGAAGTAGAAAAGAAAAACTTAGAAGAACTC  750

seq1  ACAAAGGAACAGATTTAGAAAGTTATTGAAATCGTCCTGAAATTCCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAACAGATTTAGAAAGTTATTGAAATCGTCCTGAAATTCCAGTA  800

seq1  AACACAAAAATATTACCTTAAGAAATATGTGGAAATAATTGCTGAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAAATATTACCTTAAGAAATATGTGGAAATAATTGCTGAGAAAG  850

seq1  ACAAAAGCCAAACCCACACACAAACCAAACCAAACCAAAACAACCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCAAACCCACACACAAACCAAACCAAACCAAAACAACCAGAAA  900

seq1  GACCTTCTGGTGATTTGAATGAGCTGATCCATCCATCCCCCTGCAGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTGGTGATTTGAATGAGCTGATCCATCCATCCCCCTGCAGTCTT  950

seq1  GGGCATGTGAGTATTTGA-TTCCAAGTTGTTAGCAGTTT-GGAGGAGATT  998
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GGGCATGTGAGTATTTGATTTCCAAGTTGTTAGCAGTTTGGGAGGAGATT  1000

seq1  T-GGAAGGATGG-CCTTGCTAGAGGAAGTATGTCACCCGGAGAGTGCTGT  1046
      | |||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TGGGAAGGATGGCCCTTGCTAGAGG-AGTATGTCACCCGGAGAGTGCTGT  1049

seq1  TAGGCTTCCAAAGACTCAGCAC-ATACTGAGTTCTGACATCTGACA-TCT  1094
      ||||||| | |||||||||||| ||||||||||||||||||||||| |||
seq2  TAGGCTTTCTAAGACTCAGCACAATACTGAGTTCTGACATCTGACAGTCT  1099

seq1  GCTTG--TGAATAGTGATGAG-AGCTCTCAGCTCCT-GGTGCCA--CTGT  1138
      || ||   ||||||||||||| ||||||||||| || |||||||   |||
seq2  GCCTGGTGGAATAGTGATGAGAAGCTCTCAGCTTCTGGGTGCCAACGTGT  1149

seq1  GTC--TTTGCTCT  1149
      |||  || |||||
seq2  GTCCTTTGGCTCT  1162