BAC Information

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BAC

Clone NameB6Ng01-309M12
Chromosome6 (Build37)
Map Location 71,664,451 - 71,807,350
singlet/doubletdoublet
Overlap geneReep1, Mrpl35, Immt
Upstream geneIgk, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034
Downstream genePtcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309M12.bB6Ng01-309M12.g
ACCGA101936GA101937
length1,1201,155
definitionB6Ng01-309M12.b B6Ng01-309M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,806,224 - 71,807,350)(71,664,451 - 71,665,607)
sequence
gaattctcacactgtttgttaacagtgccgtggttcactgaaagcgtatc
tgaaggtttttctcagctagcacacacctgtgatatccctacttaggaag
cttatgcaagaagatcactgcaagtcactgtgatttttgccagcctggcc
tccttaatgcaggctagtctgaaacacacagtaagaagattcagacttaa
agatatagaaggaaaaaggaagatcatcatagactgtctttactctgtaa
gaaagcctttatcacacagacgcaacctgtctactacaggtcaccttcct
cggcgcacctcagaattgtccatggctgttttcagtatgttggagtgtgc
cttgacagcctgaactgcagcattctgggctgtaatagtctgcagagtga
cagacgaagtccggttcagagcatcttctaaactcttggctagagctgaa
aaaggaaagaacagttaaaaacaaatcctccttacaaaagactttaaact
tctattcttctcctagaagtattccagcacaattaattcacaaaaacaac
aaacaaaataaactatacacaagacccaattttaggaaggcataattctc
ttaaaagtacgggagtggaggtacagatgggaacttagttacagaagtgg
ctcagagcacttgctgcttgtgtagagacaagggttttggttcctttcac
tcacatggcagctcagaactccatctaactctactcccagtttaacatcc
tcttctggcctctacaggtatcaggcacaaaacatacacacatgcaggca
agaactcacacagctaaaaaagaaacaaacgatacatctttaagaaaata
agaacaagccaggcgtggtggtgcatgcctgtaatcccagcactcgggag
gcagaggcaggtggatttctgagttcgaggccagcctggtctacagagtg
agttccaggacagccaggggctatacagagaaaccctgtctcaaaaaacc
aaaaaaagaaaaaaaaaaatacgaacagatggatctgtcagagtttactg
cattatttccacctttataatgtctggactttccaataacgtggttaacg
gaaaaattcttagatggcta
gaattccaaggtagtctggactcagagtgaaaccatatttcaaaaaccaa
aaataacaaacaaagcttctaaaactatgagataaaatataacagcatac
cttttaaacgggatagctgaggggttttttgtttgtttgctttggtttgg
cttttttaagacttatctattttatgaattcaagtgctctgtttacatgt
ataccagaagaaggcatcagatcacatttcagatggttatgagccaccat
gtggttgctggcaattgacctggggacctctagatgcacagacatgctct
tcaccgctgagccatctccccagccctatggctgagtttttaagtaacaa
aagaaaagaccccaagtcaggccgtatagacacttgaattcaagccctgg
tttctattcactggcgaagtgaccccatcaatttctcaaagatggaatta
cgaatcatctttatgtccgtggtacccagcatagggccagcaccaaggaa
gtgatcaataatggacaccaaattggttaataattcaagtgatgaatgaa
tgaatcgtcttgaggaaggatgggagcttggttctttaatgtccccaaag
gctcatgtgttgaaagccatgtttgtgcctagtgcctgaggaggccagaa
gagcttgccaggtcccttggtgctgagaattaacttggatcctttgcaag
accagcaagtactcttaactgcttaatcattgctcagccctgactccccc
tgattcttgagacgggatttctcactggcagagtttgccaagcaggctag
gcgggctgtcccgtgagctctagcactgggtttacaagcatgtgacacca
tgcctaacttttttaaacctgggttctgggcatggaactctggtcttcat
tatcgcaaagttagcatttatcaaccaagctatgcccccagctcttgtta
gggctttgttcccattttcctgaacccttattgagactagtgtttaaggc
tgtgtgtttatccgcctgtttatgctctctctctgtgagcgcctgttcag
atgtggcttatgtttcggcactcctcccttcctgtagaggagttctttaa
tttcctgcatgtttattctgctgacatctatgtgtttacaaatgttggcc
ctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71806224_71807350
seq2: B6Ng01-309M12.b_49_1168 (reverse)

seq1  TAGCCTTTCTAAGAATTTTTTCCCCTAAACAACCTTTAATTTGGAAAATT  50
      |||||  |||||||||||||  || | ||| || ||    ||||||| | 
seq2  TAGCC-ATCTAAGAATTTTT--CCGTTAACCACGTT---ATTGGAAAGTC  44

seq1  CAGACATTTATAAAAGTGGAAATAATACAGTAAACTCTGACAAGATCCAT  100
      |||||| ||||||| ||||||||||| |||||||||||||| ||||||||
seq2  CAGACA-TTATAAAGGTGGAAATAATGCAGTAAACTCTGAC-AGATCCAT  92

seq1  CTGTTCGTATTTTTTTTTTTCTTTTTTTGGTTTTTTGAGACAGGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCGTATTTTTTTTTTTCTTTTTTTGGTTTTTTGAGACAGGGTTTCT  142

seq1  CTGTATAG-CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  192

seq1  TCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTACAG  242

seq1  GCATGCACCACCACGCCTGGCTTGTTCTTATTTTCTTAAAGATGTATCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACCACCACGCCTGGCTTGTTCTTATTTTCTTAAAGATGTATCGT  292

seq1  TTGTTTCTTTTTTAGCTGTGTGAGTTCTTGCCTGCATGTGTGTATGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTTTTAGCTGTGTGAGTTCTTGCCTGCATGTGTGTATGTTTT  342

seq1  GTGCCTGATACCTGTAGAGGCCAGAAGAGGATGTTAAACTGGGAGTAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGATACCTGTAGAGGCCAGAAGAGGATGTTAAACTGGGAGTAGAG  392

seq1  TTAGATGGAGTTCTGAGCTGCCATGTGAGTGAAAGGAACCAAAACCCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGAGTTCTGAGCTGCCATGTGAGTGAAAGGAACCAAAACCCTTG  442

seq1  TCTCTACACAAGCAGCAAGTGCTCTGAGCCACTTCTGTAACTAAGTTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACACAAGCAGCAAGTGCTCTGAGCCACTTCTGTAACTAAGTTCCC  492

seq1  ATCTGTACCTCCACTCCCGTACTTTTAAGAGAATTATGCCTTCCTAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACCTCCACTCCCGTACTTTTAAGAGAATTATGCCTTCCTAAAAT  542

seq1  TGGGTCTTGTGTATAGTTTATTTTGTTTGTTGTTTTTGTGAATTAATTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTGTGTATAGTTTATTTTGTTTGTTGTTTTTGTGAATTAATTGT  592

seq1  GCTGGAATACTTCTAGGAGAAGAATAGAAGTTTAAAGTCTTTTGTAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATACTTCTAGGAGAAGAATAGAAGTTTAAAGTCTTTTGTAAGGA  642

seq1  GGATTTGTTTTTAACTGTTCTTTCCTTTTTCAGCTCTAGCCAAGAGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTTTTTAACTGTTCTTTCCTTTTTCAGCTCTAGCCAAGAGTTTA  692

seq1  GAAGATGCTCTGAACCGGACTTCGTCTGTCACTCTGCAGACTATTACAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTCTGAACCGGACTTCGTCTGTCACTCTGCAGACTATTACAGC  742

seq1  CCAGAATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACATACTGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGCTGCAGTTCAGGCTGTCAAGGCACACTCCAACATACTGAAAA  792

seq1  CAGCCATGGACAATTCTGAGGTGCGCCGAGGAAGGTGACCTGTAGTAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGGACAATTCTGAGGTGCGCCGAGGAAGGTGACCTGTAGTAGAC  842

seq1  AGGTTGCGTCTGTGTGATAAAGGCTTTCTTACAGAGTAAAGACAGTCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCGTCTGTGTGATAAAGGCTTTCTTACAGAGTAAAGACAGTCTAT  892

seq1  GATGATCTTCCTTTTTCCTTCTATATCTTTAAGTCTGAATCTTCTTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTCCTTTTTCCTTCTATATCTTTAAGTCTGAATCTTCTTACTG  942

seq1  TGTGTTTCAGACTAGCCTGCATTAAGGAGGCCAGGCTGGCAAAAATCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCAGACTAGCCTGCATTAAGGAGGCCAGGCTGGCAAAAATCACA  992

seq1  GTGACTTGCAGTGATCTTCTTGCATAAGCTTCCTAAGTAGGGATATCACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGCAGTGATCTTCTTGCATAAGCTTCCTAAGTAGGGATATCACA  1042

seq1  GGTGTGTGCTAGCTGAGAAAAACCTTCAGATACGCTTTCAGTGAACCACG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTAGCTGAGAAAAACCTTCAGATACGCTTTCAGTGAACCACG  1092

seq1  GCACTGTTAACAAACAGTGTGAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  GCACTGTTAACAAACAGTGTGAGAATTC  1120

seq1: chr6_71664451_71665607
seq2: B6Ng01-309M12.g_66_1220

seq1  GAATTCCAAGGTAGTCTGGACTCAGAGTGAAACCATATTTCAAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTAGTCTGGACTCAGAGTGAAACCATATTTCAAAAACCAA  50

seq1  AAATAACAAACAAAGCTTCTAAAACTATGAGATAAAATATAACAGCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAACAAAGCTTCTAAAACTATGAGATAAAATATAACAGCATAC  100

seq1  CTTTTAAACGGGATAGCTGAGGGGTTTTTTGTTTGTTTGCTTTGGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACGGGATAGCTGAGGGGTTTTTTGTTTGTTTGCTTTGGTTTGG  150

seq1  CTTTTTTAAGACTTATCTATTTTATGAATTCAAGTGCTCTGTTTACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAAGACTTATCTATTTTATGAATTCAAGTGCTCTGTTTACATGT  200

seq1  ATACCAGAAGAAGGCATCAGATCACATTTCAGATGGTTATGAGCCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAAGAAGGCATCAGATCACATTTCAGATGGTTATGAGCCACCAT  250

seq1  GTGGTTGCTGGCAATTGACCTGGGGACCTCTAGATGCACAGACATGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGCAATTGACCTGGGGACCTCTAGATGCACAGACATGCTCT  300

seq1  TCACCGCTGAGCCATCTCCCCAGCCCTATGGCTGAGTTTTTAAGTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGCTGAGCCATCTCCCCAGCCCTATGGCTGAGTTTTTAAGTAACAA  350

seq1  AAGAAAAGACCCCAAGTCAGGCCGTATAGACACTTGAATTCAAGCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGACCCCAAGTCAGGCCGTATAGACACTTGAATTCAAGCCCTGG  400

seq1  TTTCTATTCACTGGCGAAGTGACCCCATCAATTTCTCAAAGATGGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCACTGGCGAAGTGACCCCATCAATTTCTCAAAGATGGAATTA  450

seq1  CGAATCATCTTTATGTCCGTGGTACCCAGCATAGGGCCAGCACCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCATCTTTATGTCCGTGGTACCCAGCATAGGGCCAGCACCAAGGAA  500

seq1  GTGATCAATAATGGACACCAAATTGGTTAATAATTCAAGTGATGAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAATAATGGACACCAAATTGGTTAATAATTCAAGTGATGAATGAA  550

seq1  TGAATCGTCTTGAGGAAGGATGGGAGCTTGGTTCTTTAATGTCCCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCGTCTTGAGGAAGGATGGGAGCTTGGTTCTTTAATGTCCCCAAAG  600

seq1  GCTCATGTGTTGAAAGCCATGTTTGTGCCTAGTGCCTGAGGAGGCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTGTTGAAAGCCATGTTTGTGCCTAGTGCCTGAGGAGGCCAGAA  650

seq1  GAGCTTGCCAGGTCCCTTGGTGCTGAGAATTAACTTGGATCCTTTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCCAGGTCCCTTGGTGCTGAGAATTAACTTGGATCCTTTGCAAG  700

seq1  ACCAGCAAGTACTCTTAACTGCTTAATCATTGCTCAGCCCTGACTCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGTACTCTTAACTGCTTAATCATTGCTCAGCCCTGACTCCCCC  750

seq1  TGATTCTTGAGACGGGATTTCTCACTGGCAGAGTTTGCCAAGCAGGCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTGAGACGGGATTTCTCACTGGCAGAGTTTGCCAAGCAGGCTAG  800

seq1  GCGGGCTGTCCCGTGAGCTCTAGCACTGGGTTTACAAGCATGTGACACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGTCCCGTGAGCTCTAGCACTGGGTTTACAAGCATGTGACACCA  850

seq1  TGCCTAACTTTTTTAAAACCTGGGTTCTGGGCATGGAACTCTGGTCTTCA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCCTAACTTTTTT-AAACCTGGGTTCTGGGCATGGAACTCTGGTCTTCA  899

seq1  TTATCGCAAAGTTAGCATTTATCAACCAAGCTATGCCCCCAGCTCTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGCAAAGTTAGCATTTATCAACCAAGCTATGCCCCCAGCTCTTGTT  949

seq1  AGGGCTTTGTTTCCCATTTTCCTGAACCCTTAATGAGACTAAGTTGTTAA  1000
      ||||||||| |||||||||||||||||||||| ||||||| |||  ||||
seq2  AGGGCTTTG-TTCCCATTTTCCTGAACCCTTATTGAGACT-AGTGTTTAA  997

seq1  GGCTGTGTGTTTAT-CGCCTGTTTATGCTCTCTCTCCTGTGAAGCGCCTG  1049
      |||||||||||||| |||||||||||||||||||| ||||| ||||||||
seq2  GGCTGTGTGTTTATCCGCCTGTTTATGCTCTCTCT-CTGTG-AGCGCCTG  1045

seq1  TTCAGATGTGGCTAATGTTTCGGCACTTCCTCCCTTCCTGTAGAAGGAGT  1099
      ||||||||||||| |||||||||||| |||||||||||||||| ||||||
seq2  TTCAGATGTGGCTTATGTTTCGGCAC-TCCTCCCTTCCTGTAG-AGGAGT  1093

seq1  TCTTTAAATTCCTGCATG-TTATTCTGCTGGCATCTATGTG-TTACAAAT  1147
      ||||||| |||||||||| ||||||||||| |||||||||| ||||||||
seq2  TCTTTAATTTCCTGCATGTTTATTCTGCTGACATCTATGTGTTTACAAAT  1143

seq1  GTTG--CCTCTC  1157
      ||||  ||||||
seq2  GTTGGCCCTCTC  1155