BAC Information

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BAC

Clone NameB6Ng01-310A21
Chromosome6 (Build37)
Map Location 25,207,323 - 25,322,722
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A21.bB6Ng01-310A21.g
ACCGA102140GA102141
length1,1861,181
definitionB6Ng01-310A21.b B6Ng01-310A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,207,323 - 25,208,508)(25,321,522 - 25,322,722)
sequence
gaattctgtgaggggggacagtgatgagagtcagtatttggaatgtaaat
aaaggaataaataaataaataaataaataatttttagaaaataatgtgtg
acttttaagagagaggtagctgacatagttgaaagaaggcagaactatca
gcttctgacagagacattgaaaataatctgaagataaatacaaaataaaa
gatcagaaaaacataaaaataaactcctaacaaccaccgggttaaggtgg
agatttcattcttttctgttttcagacatccatattttatcctttataca
tatataagatgacttccagtcttatttgcttatagactgaattattctat
cacaggatgacaagctctgacaaatagcttcccaataataagaagtctag
cagaccccatgcatatctgtaaaaggagatatgaggaaaacaggcagaaa
tgtcttttatccaaatgcttccatgtgggagacagtgctgtcaatgtctg
ttacattattctctcacctgggaggtcttacatttatcagggcaaggcaa
gtttcaagataattttctaactagtaacccaggctagagtagcacattat
gaaagattagttgaaattaaaagaaatgttcacataacattaatgaattt
tgcctactttttaatattgttagaaatattcatgtttaaataagaataat
ggcagaattccatgtttagactgtttgcctaaagtaacctgaggaaacaa
tggagttgtgggttttgatttttgttagtattcgtaaaatatgacaaaca
ttgtaaatactgtaaaacgaggttgattttttatataataggtaagtagc
ccggagacctttactcagtattttaggtaggtagtctgggatctgacatt
agtatgggaatgaagttcatttgtcagttgtggtggtttacatctgtaat
tcaagatatgtggctgaataatatggatttgaatcaactctcagctatat
ggggagaatcctgttgcaaaagaacaataagcaaagtctagagagaacag
ctcagtttgtaagaagtgctttgctgctttagcgagaccttgggttgggt
tcttaagcatcatgtccagttgtcatagctaactatgacccagcttgaga
ctcaggtacataccatccataaatcaaataagcatt
gaattcagtggaatgccaggctgcaggacaagtttatatggtaagtccct
catactttctctcgagtccttgcaagggaatattctgattgtctgattcc
tcccagaaacatggtatttccagccttttctcttcaggctaagacacaaa
cttccatcctccatattatacactgcatgcactctcctctgtgagcccac
ctcatttaatctttggaaaatggagatctcaaaactcatttgctatacat
atattcaaatcaatttgaactgttatttttttcttacatcttggcatgaa
gaaaagtgcttctgagatatacatgaataaggacagtgagtgaatgtgcc
aaagctgtgaagaagagtgcctcgaaatatttttgtgtaataaagtcaaa
gataatttgtgtaccatgtatttcagatgggctaaaaactgagttcctct
atccttttttaattttgtttaataatggtcccgagttttgtgcacactag
caaaatactctgtcactggcatagatgctcagccttgattccattcttgt
tatttaagctctaatattatcatttacaaaatgatttgagacaaaatgtc
agcaaagacacctatgagttcattttgtattgaacatctttatttttttc
taaaatgttataaagtaagaaagcatggagttgggtgagtgggtcaatag
acaggatcagggaggagttggaagatgaggtaccttgatcagaatatagt
gtatgaaaaatattttcaaccaaagggtataatatataaaacaaaaagag
agaactaatggaataaataccgtctttccctccagttggtaaatgtgatg
attcttttctggcaatacttgttgagcagggtggtacacttcgcagaact
ttaccatttctacatttcttcctaaggtacatcaacctaggaacttcctt
gctatgcactgggcaggcattctctatctctatctatatataaaaaatat
atacaaattcatcagtcattctctgtttaaaatctgactttctgtcaaat
taggggatgaggaacaaatcagatatattaaggaaaattaagaaatcata
ttcatagttagaatcggtcagatgagaagattgaggaaatcacattcaac
ctatcctacattacccttaaaagtgtatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25207323_25208508
seq2: B6Ng01-310A21.b_44_1229

seq1  GAATTCTGTGAGGGGGGACAGTGATGAGAGTCAGTATTTGGAATGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGGGGGGACAGTGATGAGAGTCAGTATTTGGAATGTAAAT  50

seq1  AAAGGAATAAATAAATAAATAAATAAATAATTTTTAGAAAATAATGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATAAATAAATAAATAAATAAATAATTTTTAGAAAATAATGTGTG  100

seq1  ACTTTTAAGAGAGAGGTAGCTGACATAGTTGAAAGAAGGCAGAACTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGAGAGAGGTAGCTGACATAGTTGAAAGAAGGCAGAACTATCA  150

seq1  GCTTCTGACAGAGACATTGAAAATAATCTGAAGATAAATACAAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGACAGAGACATTGAAAATAATCTGAAGATAAATACAAAATAAAA  200

seq1  GATCAGAAAAACATAAAAATAAACTCCTAACAACCACCGGGTTAAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAAAACATAAAAATAAACTCCTAACAACCACCGGGTTAAGGTGG  250

seq1  AGATTTCATTCTTTTCTGTTTTCAGACATCCATATTTTATCCTTTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTCTTTTCTGTTTTCAGACATCCATATTTTATCCTTTATACA  300

seq1  TATATAAGATGACTTCCAGTCTTATTTGCTTATAGACTGAATTATTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGATGACTTCCAGTCTTATTTGCTTATAGACTGAATTATTCTAT  350

seq1  CACAGGATGACAAGCTCTGACAAATAGCTTCCCAATAATAAGAAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGACAAGCTCTGACAAATAGCTTCCCAATAATAAGAAGTCTAG  400

seq1  CAGACCCCATGCATATCTGTAAAAGGAGATATGAGGAAAACAGGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCATGCATATCTGTAAAAGGAGATATGAGGAAAACAGGCAGAAA  450

seq1  TGTCTTTTATCCAAATGCTTCCATGTGGGAGACAGTGCTGTCAATGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTATCCAAATGCTTCCATGTGGGAGACAGTGCTGTCAATGTCTG  500

seq1  TTACATTATTCTCTCACCTGGGAGGTCTTACATTTATCAGGGCAAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATTCTCTCACCTGGGAGGTCTTACATTTATCAGGGCAAGGCAA  550

seq1  GTTTCAAGATAATTTTCTAACTAGTAACCCAGGCTAGAGTAGCACATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGATAATTTTCTAACTAGTAACCCAGGCTAGAGTAGCACATTAT  600

seq1  GAAAGATTAGTTGAAATTAAAAGAAATGTTCACATAACATTAATGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTAGTTGAAATTAAAAGAAATGTTCACATAACATTAATGAATTT  650

seq1  TGCCTACTTTTTAATATTGTTAGAAATATTCATGTTTAAATAAGAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTTTTTAATATTGTTAGAAATATTCATGTTTAAATAAGAATAAT  700

seq1  GGCAGAATTCCATGTTTAGACTGTTTGCCTAAAGTAACCTGAGGAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATTCCATGTTTAGACTGTTTGCCTAAAGTAACCTGAGGAAACAA  750

seq1  TGGAGTTGTGGGTTTTGATTTTTGTTAGTATTCGTAAAATATGACAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGTGGGTTTTGATTTTTGTTAGTATTCGTAAAATATGACAAACA  800

seq1  TTGTAAATACTGTAAAACGAGGTTGATTTTTTATATAATAGGTAAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATACTGTAAAACGAGGTTGATTTTTTATATAATAGGTAAGTAGC  850

seq1  CCGGAGACCTTTACTCAGTATTTTAGGTAGGTAGTCTGGGATCTGACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGACCTTTACTCAGTATTTTAGGTAGGTAGTCTGGGATCTGACATT  900

seq1  AGTATGGGAATGAAGTTCATTTGTCAGTTGTGGTGGTTTACATCTGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGAATGAAGTTCATTTGTCAGTTGTGGTGGTTTACATCTGTAAT  950

seq1  TCAAGATATGTGGCTGAATAATATGGATTTGAATCCACTCTCAGCTATAT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAAGATATGTGGCTGAATAATATGGATTTGAATCAACTCTCAGCTATAT  1000

seq1  GGGGAG-ATCCTGTTGCAAAAGAACAAT-AGCAAAGTCTAGAGAG-ACAG  1047
      |||||| ||||||||||||||||||||| |||||||||||||||| ||||
seq2  GGGGAGAATCCTGTTGCAAAAGAACAATAAGCAAAGTCTAGAGAGAACAG  1050

seq1  CTCAGTTTGTAAG-AGTGC-TTGCTGCTTTTAGCCGAGGACTTGGGTTTG  1095
      ||||||||||||| ||||| ||||||| ||||| ||||  |||||||| |
seq2  CTCAGTTTGTAAGAAGTGCTTTGCTGC-TTTAG-CGAGACCTTGGGTTGG  1098

seq1  GTTCCT-AGCATCCATGTCAAGTGGTTCATAGCT-ACTATGACACCAGCT  1143
      |||| | ||||| |||||| ||| | |||||||| |||||||| ||||||
seq2  GTTCTTAAGCAT-CATGTCCAGTTG-TCATAGCTAACTATGAC-CCAGCT  1145

seq1  TTAGACTCAGTTACATACAATCAATAAAATCAAAATAAGCATT  1186
      | |||||||| ||||||| ||| || ||||| |||||||||||
seq2  TGAGACTCAGGTACATACCATCCAT-AAATC-AAATAAGCATT  1186

seq1: chr6_25321522_25322722
seq2: B6Ng01-310A21.g_65_1245 (reverse)

seq1  CAGATACA-TTTTAA-GGTA--GTAAGATAGGTTGATTGTAGAATTCTCC  46
      |||||||| |||||| ||||  ||| |||||||||| ||| ||  | |||
seq2  CAGATACACTTTTAAGGGTAATGTAGGATAGGTTGAATGT-GA--TTTCC  47

seq1  TCATCTCTTCTTCATCTTTTAACGATTTCTACTATTTGGAATATTGAATT  96
      |||  ||||| |||||  | | |||||   |||||   ||||| |||  |
seq2  TCA-ATCTTC-TCATC--TGACCGATTCTAACTAT---GAATA-TGA--T  87

seq1  TTCTTATTTTTCCCTAATTATATCCTGATTTTGTTCCTCATCCCCCTAAT  146
      |||||| |||||| ||| ||||| |||| |||||||||||| ||||||||
seq2  TTCTTAATTTTCCTTAA-TATAT-CTGA-TTTGTTCCTCAT-CCCCTAAT  133

seq1  TTGACAGAAAGTCAAGATTTTTAAACAGAGAATGACTTGATGAATTTTGT  196
      ||||||||||||| ||| |||||||||||||||||| ||||||| |||||
seq2  TTGACAGAAAGTC-AGA-TTTTAAACAGAGAATGAC-TGATGAA-TTTGT  179

seq1  ATATATTTTTTAATATATAGGATAGAGAATAGAGAATGCCTGCCCAGTGC  246
      ||||||||||| ||||||| ||||||| ||||||||||||||||||||||
seq2  ATATATTTTTT-ATATATA-GATAGAG-ATAGAGAATGCCTGCCCAGTGC  226

seq1  ATAGCAAGGAAGTTCCTAGGTTGATGTACCTTAGGAAGAAATGTAGAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGAAGTTCCTAGGTTGATGTACCTTAGGAAGAAATGTAGAAAT  276

seq1  GGTAAAGTTCTGCGAAGTGTACCACCCTGCTCAACAAGTATTGCCAGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTTCTGCGAAGTGTACCACCCTGCTCAACAAGTATTGCCAGAAA  326

seq1  AGAATCATCACATTTACCAACTGGAGGGAAAGACGGTATTTATTCCATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATCACATTTACCAACTGGAGGGAAAGACGGTATTTATTCCATTA  376

seq1  GTTCTCTCTTTTTGTTTTATATATTATACCCTTTGGTTGAAAATATTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCTTTTTGTTTTATATATTATACCCTTTGGTTGAAAATATTTTT  426

seq1  CATACACTATATTCTGATCAAGGTACCTCATCTTCCAACTCCTCCCTGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTATATTCTGATCAAGGTACCTCATCTTCCAACTCCTCCCTGAT  476

seq1  CCTGTCTATTGACCCACTCACCCAACTCCATGCTTTCTTACTTTATAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTATTGACCCACTCACCCAACTCCATGCTTTCTTACTTTATAACA  526

seq1  TTTTAGAAAAAAATAAAGATGTTCAATACAAAATGAACTCATAGGTGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAAAATAAAGATGTTCAATACAAAATGAACTCATAGGTGTCT  576

seq1  TTGCTGACATTTTGTCTCAAATCATTTTGTAAATGATAATATTAGAGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACATTTTGTCTCAAATCATTTTGTAAATGATAATATTAGAGCTT  626

seq1  AAATAACAAGAATGGAATCAAGGCTGAGCATCTATGCCAGTGACAGAGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAGAATGGAATCAAGGCTGAGCATCTATGCCAGTGACAGAGTA  676

seq1  TTTTGCTAGTGTGCACAAAACTCGGGACCATTATTAAACAAAATTAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAGTGTGCACAAAACTCGGGACCATTATTAAACAAAATTAAAAA  726

seq1  AGGATAGAGGAACTCAGTTTTTAGCCCATCTGAAATACATGGTACACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAGGAACTCAGTTTTTAGCCCATCTGAAATACATGGTACACAAA  776

seq1  TTATCTTTGACTTTATTACACAAAAATATTTCGAGGCACTCTTCTTCACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGACTTTATTACACAAAAATATTTCGAGGCACTCTTCTTCACA  826

seq1  GCTTTGGCACATTCACTCACTGTCCTTATTCATGTATATCTCAGAAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCACATTCACTCACTGTCCTTATTCATGTATATCTCAGAAGCAC  876

seq1  TTTTCTTCATGCCAAGATGTAAGAAAAAAATAACAGTTCAAATTGATTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATGCCAAGATGTAAGAAAAAAATAACAGTTCAAATTGATTTG  926

seq1  AATATATGTATAGCAAATGAGTTTTGAGATCTCCATTTTCCAAAGATTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTATAGCAAATGAGTTTTGAGATCTCCATTTTCCAAAGATTAA  976

seq1  ATGAGGTGGGCTCACAGAGGAGAGTGCATGCAGTGTATAATATGGAGGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGGGCTCACAGAGGAGAGTGCATGCAGTGTATAATATGGAGGAT  1026

seq1  GGAAGTTTGTGTCTTAGCCTGAAGAGAAAAGGCTGGAAATACCATGTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTGTGTCTTAGCCTGAAGAGAAAAGGCTGGAAATACCATGTTTC  1076

seq1  TGGGAGGAATCAGACAATCAGAATATTCCCTTGCAAGGACTCGAGAGAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAATCAGACAATCAGAATATTCCCTTGCAAGGACTCGAGAGAAA  1126

seq1  GTATGAGGGACTTACCATATAAACTTGTCCTGCAGCCTGGCATTCCACTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGGACTTACCATATAAACTTGTCCTGCAGCCTGGCATTCCACTG  1176

seq1  AATTC  1201
      |||||
seq2  AATTC  1181