BAC Information

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BAC

Clone NameB6Ng01-310B16
Chromosome6 (Build37)
Map Location 22,613,902 - 22,779,836
singlet/doubletdoublet
Overlap geneLOC668018, LOC668022
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
Downstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B16.bB6Ng01-310B16.g
ACCGA102174GA102175
length1,1211,174
definitionB6Ng01-310B16.b B6Ng01-310B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,778,741 - 22,779,836)(22,613,902 - 22,615,096)
sequence
gaattcaagtatcacagattccatatgtgagaatacgcagtatttatgtg
tctatatttgacttgcttcacttagtataatgtcctctatgttgtggcaa
agaacagagtacttcttttatggggactgaaaaataatagattatatgta
tgcctgtatgcacatttcatgttctctttacctatccatctactgataga
tatttctatctcccgagcattataacagcagggaatctatatcttcaaca
tgttgatttaattttctgtttacttatccccagaaggtgagcagatggat
cttatggtaggtagttctattttaattatttgagaggctagagatctcta
ggctgttttctgtggttgctatccccacatacattcctaccagtcttgta
cacattcccactagttcttgtcatctgactttgatgatagccatccatac
acaagttgtatgttactttattgttctttggatttacatttctctaagta
tttgagatattggacctcttttttttatgttatttaagcaaacacaattt
tgttttcagtaaaaattgaaaatatatgagttcaggatggagcgtgagca
ggaccaatcccaggcagctttgttcacagccgttcaaatgacagcttcag
agtctgaactcctcattgtcatatgggctcaacctcctctctgttggaac
tactttggaaagaagtaccattccacggggattcaggcagttgtgaagtc
aagtcatcatccttcgagttcttttctggctggtcagaatcaatgtgatg
cttcaatcagtctcatgttcatactggaaattaatgctgtcttgtgaacc
tatgggctgctgctcgacagtacatcataactactttttcatatgccagt
gcacataaatttgggttttactggaaacctgacatatgggattgcataat
ttactcacccattgctttgtccaaaatgggcatagttcaaaaattcttca
catacttcacgggaaatcaagaaaccttctatggtgatatcttttctatc
agtccaatcacagaatgacgtatatgaaatgcccttatatttaaatatca
atatacctaatatagctgttc
gaattcattgtgcaaaggatattagaatgctatatgttcagtagttggat
acctgcaagagtccaagctcaggaaggaattattcactgtgtcctttaaa
aatgattagaaaagtaatctaaaatttagcttttgattttcctttgaaga
tcatcagagcatagtgcaagtcacaggagtgacgagggttgtaggaggtt
tgacacctaatgtcaattaaatagcatttaactacaaggagtacattgac
actgtatttctagttcttggttttgtgtaccaaataatgaagagtagctc
atctgttttcaaagactagctgaagtcactgtggaaattccactaaagct
tcgagagagctaatacttagggagtagaatgtaaatattgttaaattaca
taagacacagcaataacaacaacaacaactccaagaattcatcaaggtga
ctgtctgtgaacacccttcttttgtctgcctttcttggaactttataacc
tcttggaataagaaaatgtcctttatcttctactatatctgtttcctaaa
cgatattaaatagagtctttagtttatttgtcattagatagtaaaatgac
aacatcaaacctctatgagttcatcaggttaaaacaaggatgcaaaagtt
ctgaaaagtctagtaaaaatgttgttctctttttaccgcaattatatata
aataaaaagaaataccccacagaacttccccaggtaatgattttccctct
cattcatttggaaccttcccccactgtacaactcatcctgtcctctgcct
gttccctcatctgcactgcacatcttattgcttacatcagaggcattgag
accatgttactctaactcaccattaccactcaccttctctattgcaaaaa
cagttttccttaacttctttgctgcaatctttagcatcctaagctaactg
aaccaataatgggttgattaaacttctgaagatttcgccttattattttt
acattatactgtgactaaacgcaagctatacgtctggacccactgcatga
cactgagctgtgtagcagccatctcttgtctagtatgttactatggctga
atgaacaccagacaaacacttgggattagttattgcctactgccattgaa
ggttcacaaaccgaaggaaaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_22778741_22779836
seq2: B6Ng01-310B16.b_74_1170 (reverse)

seq1  GAACAGCTATTATTA-GTATATTGGATATTTAAATATAA-GGCATTTCAT  48
      ||||||||| ||||| ||||||| ||||||||||||||| ||||||||||
seq2  GAACAGCTA-TATTAGGTATATT-GATATTTAAATATAAGGGCATTTCAT  48

seq1  ATTAACGTCATTCTGTGAATGGACTGATAG-AAAGATATCACCAATAGAA  97
      ||  |||||||||||||| ||||||||||| |||||||||||| ||||||
seq2  AT--ACGTCATTCTGTGATTGGACTGATAGAAAAGATATCACC-ATAGAA  95

seq1  GGTTTCTTGATTT-CCGTGAAGTATGTGAAGAATTTTTGAACTATG-CCA  145
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GGTTTCTTGATTTCCCGTGAAGTATGTGAAGAATTTTTGAACTATGCCCA  145

seq1  TTTTGGACAAAGCAATGGGTGAGTAAATTATGCAATCCCATATGTCAGG-  194
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTGGACAAAGCAATGGGTGAGTAAATTATGCAATCCCATATGTCAGGT  195

seq1  TTCCAGTAAAACCCAAATTTATGTGCACTGGCATATGAAAAAGTAGTTAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTAAAACCCAAATTTATGTGCACTGGCATATGAAAAAGTAGTTAT  245

seq1  GATGTACTGTCGAGCAGCAGCCCATAGGTTCACAAGACAGCATTAATTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTGTCGAGCAGCAGCCCATAGGTTCACAAGACAGCATTAATTTC  295

seq1  CAGTATGAACATGAGACTGATTGAAGCATCACATTGATTCTGACCAGCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAACATGAGACTGATTGAAGCATCACATTGATTCTGACCAGCCA  345

seq1  GAAAAGAACTCGAAGGATGATGACTTGACTTCACAACTGCCTGAATCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAACTCGAAGGATGATGACTTGACTTCACAACTGCCTGAATCCCC  395

seq1  GTGGAATGGTACTTCTTTCCAAAGTAGTTCCAACAGAGAGGAGGTTGAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGGTACTTCTTTCCAAAGTAGTTCCAACAGAGAGGAGGTTGAGC  445

seq1  CCATATGACAATGAGGAGTTCAGACTCTGAAGCTGTCATTTGAACGGCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGACAATGAGGAGTTCAGACTCTGAAGCTGTCATTTGAACGGCTG  495

seq1  TGAACAAAGCTGCCTGGGATTGGTCCTGCTCACGCTCCATCCTGAACTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAGCTGCCTGGGATTGGTCCTGCTCACGCTCCATCCTGAACTCA  545

seq1  TATATTTTCAATTTTTACTGAAAACAAAATTGTGTTTGCTTAAATAACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAATTTTTACTGAAAACAAAATTGTGTTTGCTTAAATAACAT  595

seq1  AAAAAAAAGAGGTCCAATATCTCAAATACTTAGAGAAATGTAAATCCAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGGTCCAATATCTCAAATACTTAGAGAAATGTAAATCCAAA  645

seq1  GAACAATAAAGTAACATACAACTTGTGTATGGATGGCTATCATCAAAGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAAAGTAACATACAACTTGTGTATGGATGGCTATCATCAAAGTC  695

seq1  AGATGACAAGAACTAGTGGGAATGTGTACAAGACTGGTAGGAATGTATGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAAGAACTAGTGGGAATGTGTACAAGACTGGTAGGAATGTATGT  745

seq1  GGGGATAGCAACCACAGAAAACAGCCTAGAGATCTCTAGCCTCTCAAATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGCAACCACAGAAAACAGCCTAGAGATCTCTAGCCTCTCAAATA  795

seq1  ATTAAAATAGAACTACCTACCATAAGATCCATCTGCTCACCTTCTGGGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGAACTACCTACCATAAGATCCATCTGCTCACCTTCTGGGGA  845

seq1  TAAGTAAACAGAAAATTAAATCAACATGTTGAAGATATAGATTCCCTGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAACAGAAAATTAAATCAACATGTTGAAGATATAGATTCCCTGCT  895

seq1  GTTATAATGCTCGGGAGATAGAAATATCTATCAGTAGATGGATAGGTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATGCTCGGGAGATAGAAATATCTATCAGTAGATGGATAGGTAAA  945

seq1  GAGAACATGAAATGTGCATACAGGCATACATATAATCTATTATTTTTCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATGAAATGTGCATACAGGCATACATATAATCTATTATTTTTCAG  995

seq1  TCCCCATAAAAGAAGTACTCTGTTCTTTGCCACAACATAGAGGACATTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATAAAAGAAGTACTCTGTTCTTTGCCACAACATAGAGGACATTAT  1045

seq1  ACTAAGTGAAGCAAGTCAAATATAGACACATAAATACTGCGTATTCTCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGAAGCAAGTCAAATATAGACACATAAATACTGCGTATTCTCAC  1095

seq1  AT  1096
      ||
seq2  AT  1097

seq1: chr6_22613902_22615096
seq2: B6Ng01-310B16.g_71_1244

seq1  GAATTCATTGTGCAAAGGATATTAGAATGCTATATGTTCAGTAGTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCAAAGGATATTAGAATGCTATATGTTCAGTAGTTGGAT  50

seq1  ACCTGCAAGAGTCCAAGCTCAGGAAGGAATTATTCACTGTGTCCTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAGAGTCCAAGCTCAGGAAGGAATTATTCACTGTGTCCTTTAAA  100

seq1  AATGATTAGAAAAGTAATCTAAAATTTAGCTTTTGATTTTCCTTTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTAGAAAAGTAATCTAAAATTTAGCTTTTGATTTTCCTTTGAAGA  150

seq1  TCATCAGAGCATAGTGCAAGTCACAGGAGTGACGAGGGTTGTAGGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGCATAGTGCAAGTCACAGGAGTGACGAGGGTTGTAGGAGGTT  200

seq1  TGACACCTAATGTCAATTAAATAGCATTTAACTACAAGGAGTACATTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTAATGTCAATTAAATAGCATTTAACTACAAGGAGTACATTGAC  250

seq1  ACTGTATTTCTAGTTCTTGGTTTTGTGTACCAAATAATGAAGAGTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTCTAGTTCTTGGTTTTGTGTACCAAATAATGAAGAGTAGCTC  300

seq1  ATCTGTTTTCAAAGACTAGCTGAAGTCACTGTGGAAATTCCACTAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTTCAAAGACTAGCTGAAGTCACTGTGGAAATTCCACTAAAGCT  350

seq1  TCGAGAGAGCTAATACTTAGGGAGTAGAATGTAAATATTGTTAAATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGAGCTAATACTTAGGGAGTAGAATGTAAATATTGTTAAATTACA  400

seq1  TAAGACACAGCAATAACAACAACAACAACTCCAAGAATTCATCAAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGCAATAACAACAACAACAACTCCAAGAATTCATCAAGGTGA  450

seq1  CTGTCTGTGAACACCCTTCTTTTGTCTGCCTTTCTTGGAACTTTATAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGAACACCCTTCTTTTGTCTGCCTTTCTTGGAACTTTATAACC  500

seq1  TCTTGGAATAAGAAAATGTCCTTTATCTTCTACTATATCTGTTTCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATAAGAAAATGTCCTTTATCTTCTACTATATCTGTTTCCTAAA  550

seq1  CGATATTAAATAGAGTCTTTAGTTTATTTGTCATTAGATAGTAAAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATTAAATAGAGTCTTTAGTTTATTTGTCATTAGATAGTAAAATGAC  600

seq1  AACATCAAACCTCTATGAGTTCATCAGGTTAAAACAAGGATGCAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAACCTCTATGAGTTCATCAGGTTAAAACAAGGATGCAAAAGTT  650

seq1  CTGAAAAGTCTAGTAAAAATGTTGTTCTCTTTTTACCGCAATTATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTCTAGTAAAAATGTTGTTCTCTTTTTACCGCAATTATATATA  700

seq1  AATAAAAAGAAATACCCCACAGAACTTCCCCAGGTAATGATTTTCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGAAATACCCCACAGAACTTCCCCAGGTAATGATTTTCCCTCT  750

seq1  CATTCATTTGGAACCTTCCCCCACTGTACAACTCATCCTGTCCTCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTGGAACCTTCCCCCACTGTACAACTCATCCTGTCCTCTGCCT  800

seq1  GTTCCCTCATCTGCACTGCACATCTTATTGCTTACATCAGAGGCATTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCATCTGCACTGCACATCTTATTGCTTACATCAGAGGCATTGAG  850

seq1  ACCATGTTACTCTAACTCACCATTACCACTCACCTTCTCTATTGCAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTACTCTAACTCACCATTACCACTCACCTTCTCTATTGCAAAAA  900

seq1  CAGTTTTCCTTAACTTCTTTGCTGCAATCTTTAGCATCCTAAGCTAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCCTTAACTTCTTTGCTGCAATCTTTAGCATCCTAAGCTAACTG  950

seq1  AACCAATAATGGTTTGATTAAAACTTCTGAAGATTTCGCCTTA-TATTTT  999
      |||||||||||| |||||| ||||||||||||||||||||||| ||||||
seq2  AACCAATAATGGGTTGATT-AAACTTCTGAAGATTTCGCCTTATTATTTT  999

seq1  TACATTATACTGTGACTAAAACGCAAGCTATACGTCTGGACCCCACTGGC  1049
      ||||||||||||||||| |||||||||||||||||||||| |||||| ||
seq2  TACATTATACTGTGACT-AAACGCAAGCTATACGTCTGGA-CCCACT-GC  1046

seq1  ATGACACCTGAGCTTGTGTAGCAGCCATCTCTTGTCTTAGTTATGGTTAC  1099
      |||||| |||||| |||||||||||||||||||||| ||| ||| |||||
seq2  ATGACA-CTGAGC-TGTGTAGCAGCCATCTCTTGTC-TAG-TAT-GTTAC  1091

seq1  TATTGCTTTGATGAAACACCAAGACAAAAACAACTTGGGGAGTGAAAAGT  1149
      ||| ||  |||   |||||| |||||||    ||||||     ||  |||
seq2  TATGGC--TGAATGAACACC-AGACAAA---CACTTGG-----GATTAGT  1130

seq1  TTATTTTGCTTACATTTCCACATAAAGGTTCACAAA-CGAAG---AAAGT  1195
         | |||| |||  | |||  | |||||||||||| |||||   |||||
seq2  ---TATTGCCTAC--TGCCA-TTGAAGGTTCACAAACCGAAGGAAAAAGT  1174