BAC Information

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BAC

Clone NameB6Ng01-310D20
Chromosome6 (Build37)
Map Location 124,536,469 - 124,736,158
singlet/doubletdoublet
Overlap geneEG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23
Upstream geneEG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277
Downstream geneSpsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310D20.bB6Ng01-310D20.g
ACCGA102271GA102272
length7281,085
definitionB6Ng01-310D20.b B6Ng01-310D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,735,431 - 124,736,158)(124,536,469 - 124,537,558)
sequence
gaattcatctctttgttgttgttttgatacaaggtcttgctatgcagccc
agtctaagcaaggaaagagagatggggaaattatagagctatggggagcg
aaaggagttcccctccccagaatctgactggtctctctcaccagcagaga
agtgtccttactcctgttgaagacagttgatgatgttctctgcggagatt
ttgatgacgcagagataacaatttctgggagtctcagactagactatcaa
cttggtttgcagtagagatccctgtggaatcttgtctactgcagtgccct
tcggtgcccgcaggaaccacctgtttagcttctttttgaccctttgaaga
aaatagcttcaaatcaccaacattttatatatgattacgttaaagaccat
gaggtccactcttggagaaaagggaggagggctctcaggcgggcttaact
ttcttttcaaatgcttctttcccactcttttttttttatttttttatttt
tttattatatgtacgtacactgtagctgtcttcagacacaccagaagagg
gcgtcagatctcgttacggatggttgtgagccaccatgtggttgctggga
tttgaactccggacctttggaagagcagtcgggtgctcttacccactgag
ccatctcaccagccccctctttcccactcttaactggcatgtttagagtc
tgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctctctatgagaaggccacgagaaagccagaaaacaaaaactgag
caaaccagaatcagaggtcacacaagtgaacagacagtcagtcagacaga
cagacagacagacaaggatcctactttatctccaaagcaatgtgtttgtg
tcctcattgagaagggcatacacggccaactgaccaaccaaatattgtag
tttgtcaaaagaccctcactcacacaaagaccacagagactgctatgttg
taaaatacgtgaggattttacttatccaacatgttggggaaccccctttc
agcacacaggtcagaggagagacccagaacaaagaaagaacacactttgt
atacttttataaggccaggatttaggcaccagggcagtttggcttatttt
aattaatagccaatagcctttttagacattggttggtttgtatagggtga
ctctcaatttgtatttccttgaggtttttagtgtgaggccgggcagggga
attgttaatcttgttttggaagcttagtaattttgactgttaaaactaca
ttcctatatttgtttagtcagccacctttttatctgactctgtacttgtc
ctgttagtacagtttcaaaagtccttttgaagggggaaggtactgggtag
tcttgaatttattttggatattacatctccccctttctctctggtacatt
tcaatcttgaaatgatgtctcacttggttgtaactactggtattattgtc
tgagcattaaaacttgtatttaagcaattaaggatgtatgggccaaaggt
taagaacagaaaacaggatgagaaggggtagtaaacagaactaggcaggg
acccttttagtgatatttgaaaggtctgtgcatgatgcagtgcacataga
tcagatctctaacctggaactcgtgatatgtctttggggtacccggctcg
ttcgctgtagtcagttgtcctttttcaccactgcaagtcttttaacttag
catacagatcatattaaatacatgtgggtttaacaccattcatttagaca
gtgatgggcaggagagccccataagatcctcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124735431_124736158
seq2: B6Ng01-310D20.b_49_776 (reverse)

seq1  CACACACACACACACACACACACACACAGACTCTAAACATGCCAGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGACTCTAAACATGCCAGTTAAG  50

seq1  AGTGGGAAAGAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAAGAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGA  100

seq1  CTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCT  150

seq1  CACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGA  200

seq1  CAGCTACAGTGTACGTACATATAATAAAAAAATAAAAAAATAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGTGTACGTACATATAATAAAAAAATAAAAAAATAAAAAAAAA  250

seq1  AGAGTGGGAAAGAAGCATTTGAAAAGAAAGTTAAGCCCGCCTGAGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGAAAGAAGCATTTGAAAAGAAAGTTAAGCCCGCCTGAGAGCCC  300

seq1  TCCTCCCTTTTCTCCAAGAGTGGACCTCATGGTCTTTAACGTAATCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTTTCTCCAAGAGTGGACCTCATGGTCTTTAACGTAATCATAT  350

seq1  ATAAAATGTTGGTGATTTGAAGCTATTTTCTTCAAAGGGTCAAAAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTTGGTGATTTGAAGCTATTTTCTTCAAAGGGTCAAAAAGAAG  400

seq1  CTAAACAGGTGGTTCCTGCGGGCACCGAAGGGCACTGCAGTAGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGGTGGTTCCTGCGGGCACCGAAGGGCACTGCAGTAGACAAGAT  450

seq1  TCCACAGGGATCTCTACTGCAAACCAAGTTGATAGTCTAGTCTGAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGGATCTCTACTGCAAACCAAGTTGATAGTCTAGTCTGAGACTC  500

seq1  CCAGAAATTGTTATCTCTGCGTCATCAAAATCTCCGCAGAGAACATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTGTTATCTCTGCGTCATCAAAATCTCCGCAGAGAACATCATC  550

seq1  AACTGTCTTCAACAGGAGTAAGGACACTTCTCTGCTGGTGAGAGAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTTCAACAGGAGTAAGGACACTTCTCTGCTGGTGAGAGAGACCA  600

seq1  GTCAGATTCTGGGGAGGGGAACTCCTTTCGCTCCCCATAGCTCTATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTCTGGGGAGGGGAACTCCTTTCGCTCCCCATAGCTCTATAATT  650

seq1  TCCCCATCTCTCTTTCCTTGCTTAGACTGGGCTGCATAGCAAGACCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCTCTCTTTCCTTGCTTAGACTGGGCTGCATAGCAAGACCTTGT  700

seq1  ATCAAAACAACAACAAAGAGATGAATTC  728
      ||||||||||||||||||||||||||||
seq2  ATCAAAACAACAACAAAGAGATGAATTC  728

seq1: chr6_124536469_124537558
seq2: B6Ng01-310D20.g_66_1150

seq1  GAATTCTCTCTATGAGAAGGCCACGAGAAAGCCAGAAAACAAAAACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTATGAGAAGGCCACGAGAAAGCCAGAAAACAAAAACTGAG  50

seq1  CAAACCAGAATCAGAGGTCACACAAGTGAACAGACAGTCAGTCAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGAATCAGAGGTCACACAAGTGAACAGACAGTCAGTCAGACAGA  100

seq1  CAGACAGACAGACAAGGATCCTACTTTATCTCCAAAGCAATGTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAAGGATCCTACTTTATCTCCAAAGCAATGTGTTTGTG  150

seq1  TCCTCATTGAGAAGGGCATACACGGCCAACTGACCAACCAAATATTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTGAGAAGGGCATACACGGCCAACTGACCAACCAAATATTGTAG  200

seq1  TTTGTCAAAAGACCCTCACTCACACAAAGACCACAGAGACTGCTATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAAAGACCCTCACTCACACAAAGACCACAGAGACTGCTATGTTG  250

seq1  TAAAATACGTGAGGATTTTACTTATCCAACATGTTGGGGAACCCCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACGTGAGGATTTTACTTATCCAACATGTTGGGGAACCCCCTTTC  300

seq1  AGCACACAGGTCAGAGGAGAGACCCAGAACAAAGAAAGAACACACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGGTCAGAGGAGAGACCCAGAACAAAGAAAGAACACACTTTGT  350

seq1  ATACTTTTATAAGGCCAGGATTTAGGCACCAGGGCAGTTTGGCTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTATAAGGCCAGGATTTAGGCACCAGGGCAGTTTGGCTTATTTT  400

seq1  AATTAATAGCCAATAGCCTTTTTAGACATTGGTTGGTTTGTATAGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAGCCAATAGCCTTTTTAGACATTGGTTGGTTTGTATAGGGTGA  450

seq1  CTCTCAATTTGTATTTCCTTGAGGTTTTTAGTGTGAGGCCGGGCAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATTTGTATTTCCTTGAGGTTTTTAGTGTGAGGCCGGGCAGGGGA  500

seq1  ATTGTTAATCTTGTTTTGGAAGCTTAGTAATTTTGACTGTTAAAACTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAATCTTGTTTTGGAAGCTTAGTAATTTTGACTGTTAAAACTACA  550

seq1  TTCCTATATTTGTTTAGTCAGCCACCTTTTTATCTGACTCTGTACTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATTTGTTTAGTCAGCCACCTTTTTATCTGACTCTGTACTTGTC  600

seq1  CTGTTAGTACAGTTTCAAAAGTCCTTTTGAAGGGGGAAGGTACTGGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTACAGTTTCAAAAGTCCTTTTGAAGGGGGAAGGTACTGGGTAG  650

seq1  TCTTGAATTTATTTTGGATATTACATCTCCCCCTTTCTCTCTGGTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTATTTTGGATATTACATCTCCCCCTTTCTCTCTGGTACATT  700

seq1  TCAATCTTGAAATGATGTCTCACTTGGTTGTAACTACTGGTATTATTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTGAAATGATGTCTCACTTGGTTGTAACTACTGGTATTATTGTC  750

seq1  TGAGCATTAAAACTTGTATTTAAGCAATTAAGGATGTATGGGCCAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTAAAACTTGTATTTAAGCAATTAAGGATGTATGGGCCAAAGGT  800

seq1  TAAGAACAGAAAACAGGATGAGAAGGGGTAGTAAACAGAACTAGGCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGAAAACAGGATGAGAAGGGGTAGTAAACAGAACTAGGCAGGG  850

seq1  ACCCTTTTAGTGATATTTG-AAGGTCTGTGCATGATGCAGGTGCACATAG  899
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ACCCTTTTAGTGATATTTGAAAGGTCTGTGCATGATGCA-GTGCACATAG  899

seq1  ATCAGATCTCTAACCTGGAACTCGTGATATGTCTTTGGGGTACCCGGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCTCTAACCTGGAACTCGTGATATGTCTTTGGGGTACCCGGCTC  949

seq1  GTTCGCTGTAGTCAGTTGTCCTTTTTCACCACCTGCAAGTCTTTTAACTT  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTCGCTGTAGTCAGTTGTCCTTTTTCACCA-CTGCAAGTCTTTTAACTT  998

seq1  AGCATACAGATCATTATTAAAATAACATGTGGGTTTAA-ACACATCATTT  1048
      ||||||||||||| |||||||   |||||||||||||| ||   ||||||
seq2  AGCATACAGATCA-TATTAAA--TACATGTGGGTTTAACACCATTCATTT  1045

seq1  AAGACAGTGATGGGCAGGAGAGCCCCATAAAGGAT-CTCAGAA  1090
       |||||||||||||||||||||||||||||  ||| |||||||
seq2  -AGACAGTGATGGGCAGGAGAGCCCCATAA--GATCCTCAGAA  1085