BAC Information

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BAC

Clone NameB6Ng01-310E16
Chromosome6 (Build37)
Map Location 25,906,198 - 26,075,389
singlet/doubletdoublet
Overlap geneEG626912, LOC100041210
Upstream geneLOC384358, Gpr37, Pot1a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310E16.bB6Ng01-310E16.g
ACCGA102309GA102310
length1,183919
definitionB6Ng01-310E16.b B6Ng01-310E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,074,201 - 26,075,389)(25,906,198 - 25,907,114)
sequence
gaattctctttcaaactttcacttggagaggagatgtcagagtataagga
caggggatgaatctcactttctgtgggatggtgctaaatgactttctcca
tgttccctaacttgttgacatcacacatattactttttcgattaaacccc
atcacattttggaatttgcttcaagatcatgtatgaagtttacagccctg
aacgagacccatgtgaaagaggaattattaccaacataataattactagc
aacatagggaaactggactgagcacataaaacaaaatgtctgtccattga
gttgatagtaaatatatggcttttatacttgccttgcacttgaaagttaa
aattagaaagaggttttcttttcctcttctggtataacagtttatcttca
gagaaggagtacagattatacactggagttgagggaacaaagacactaat
aagcaaattttttcctaaacttgacttagtaaattaaagcaaaaaacaaa
acaccaatgcttggtctggggacagatctcagtggatgaggtgcttgtca
caacgtgtgaagtcctgagactagactttcaggacctattacagtgcaag
tatgtcatcctagcgcttctacagattaaaggagataggagagagacagg
agaggcttgggaaactcacaggctattttgtctagatttaagtgttagca
taaaataaggaaccttaccataaacctcaaacaaagtgggaggcaaagac
tgatgcttgcagctgtcctcagacttcaatgtgtgatatggcaaacaaga
aaaggactttttttaaaaacatactattcctgaaaattactaattgttta
attccatactatctgagagatataaaatgcttcgtgtaaaactattactt
ctctaggaattactactttaggaatgggtctcagatgaatataaattctg
tctgtatgtcatgcagtcaaatatgctaagtatacacataaattatagtg
tcttctatatattatcctcttacctttaaaagtatcagggcagctgtgct
gtgaaactttcccactttgagtgtacttggactcttgtttattataattc
tgacagtgatgtgcttcctttcctaatgatgactatatccttattacacg
atgaatctgtcaatcaaccagttaaggcaacaa

gaattcatgggtatagcttctgaccgacattcctaggaaacacaatctca
cagaaacatttctgctcctctggctcttaaaatcattccagcctgtcttt
cttacggattcttgattttatagggccttaaccctgtacaaagaactaaa
gagaactaaaatatgcagagagttagaaaaataatttccctcaggaaata
gcataccaattggatatgcaacaccaaatggtcagccctgcaaacataca
tagaagtaaactacaaactgaacattttgtacttataaacatgagtgtac
acacatgcacatagatatatgtatataacagctaaagaaaagaagtggtg
aatttgctagagagaagcaaagggctctggagggagaaaagtggaggcag
agatgatataattacattatagtctcaaaaataaaatcataattaaaatg
catgatatattttaaataatctattttcatactctatttaacatactaaa
acttactgaaattttatttgagtacaaattttttctgtaattgagtggcc
acattaagaaaatttgtccaagaaataatataaataattttaaatgttta
aagaattcattgagtaaacatataaatgtagaagttcgacatatttaata
aaaacaaataatcaattcattaaccaatccagaaaaggactaattgttct
cagatacaaatgtagttgtaactactcttgaacatctattgtacaaaact
gaaattcattacttcattctgtagccatcattctcttaatttgtgagagt
caaccattaaaatggagaatgaaatgacaagtatagcactagttgaaaga
atttcaaaaagaaacaaaaatgataacgagtacatacattgccattggtg
agggggtgagggggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26074201_26075389
seq2: B6Ng01-310E16.b_46_1228 (reverse)

seq1  TTGTTGCTTTAACTGGTTGATTGACAGATCATTCTGGTAATAAAGGATAA  50
      ||||||| |||||||||||||||||||||   ||  ||||| |||||| |
seq2  TTGTTGCCTTAACTGGTTGATTGACAGATTCATCGTGTAAT-AAGGAT-A  48

seq1  TAGTCAACCATTTAAGAAAGGGAAAGCACATCACTGTCAGAATTATAATA  100
      |||||| |   ||| ||||||  |||||||||||||||||||||||||||
seq2  TAGTCATC--ATTAGGAAAGG--AAGCACATCACTGTCAGAATTATAATA  94

seq1  AAC-AGAGTCCAAGTACACTCAAAGTGGGAAAGTTTCACAGCACAGCTGC  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGTCCAAGTACACTCAAAGTGGGAAAGTTTCACAGCACAGCTGC  144

seq1  CCTTGATACTTTTAAAGGTAAGAGGATAATATATAGAAGACACTATAATT  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-TGATACTTTTAAAGGTAAGAGGATAATATATAGAAGACACTATAATT  193

seq1  TATGTGTATACTTAGCATATTTGACTGCATGACATACAGACAGAATTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATACTTAGCATATTTGACTGCATGACATACAGACAGAATTTAT  243

seq1  ATTCATCTGAGACCCATTCCTAAAGTAGTAATTCCTAGAGAAGTAATAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGAGACCCATTCCTAAAGTAGTAATTCCTAGAGAAGTAATAGT  293

seq1  TTTACACGAAGCATTTTATATCTCTCAGATAGTATGGAATTAAACAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACGAAGCATTTTATATCTCTCAGATAGTATGGAATTAAACAATTA  343

seq1  GTAATTTTCAGGAATAGTATGTTTTTAAAAAAAGTCCTTTTCTTGTTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTCAGGAATAGTATGTTTTTAAAAAAAGTCCTTTTCTTGTTTGC  393

seq1  CATATCACACATTGAAGTCTGAGGACAGCTGCAAGCATCAGTCTTTGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACACATTGAAGTCTGAGGACAGCTGCAAGCATCAGTCTTTGCCT  443

seq1  CCCACTTTGTTTGAGGTTTATGGTAAGGTTCCTTATTTTATGCTAACACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGTTTGAGGTTTATGGTAAGGTTCCTTATTTTATGCTAACACT  493

seq1  TAAATCTAGACAAAATAGCCTGTGAGTTTCCCAAGCCTCTCCTGTCTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAGACAAAATAGCCTGTGAGTTTCCCAAGCCTCTCCTGTCTCTC  543

seq1  TCCTATCTCCTTTAATCTGTAGAAGCGCTAGGATGACATACTTGCACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTCCTTTAATCTGTAGAAGCGCTAGGATGACATACTTGCACTGT  593

seq1  AATAGGTCCTGAAAGTCTAGTCTCAGGACTTCACACGTTGTGACAAGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCCTGAAAGTCTAGTCTCAGGACTTCACACGTTGTGACAAGCAC  643

seq1  CTCATCCACTGAGATCTGTCCCCAGACCAAGCATTGGTGTTTTGTTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCACTGAGATCTGTCCCCAGACCAAGCATTGGTGTTTTGTTTTTT  693

seq1  GCTTTAATTTACTAAGTCAAGTTTAGGAAAAAATTTGCTTATTAGTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATTTACTAAGTCAAGTTTAGGAAAAAATTTGCTTATTAGTGTCT  743

seq1  TTGTTCCCTCAACTCCAGTGTATAATCTGTACTCCTTCTCTGAAGATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCTCAACTCCAGTGTATAATCTGTACTCCTTCTCTGAAGATAAA  793

seq1  CTGTTATACCAGAAGAGGAAAAGAAAACCTCTTTCTAATTTTAACTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATACCAGAAGAGGAAAAGAAAACCTCTTTCTAATTTTAACTTTCA  843

seq1  AGTGCAAGGCAAGTATAAAAGCCATATATTTACTATCAACTCAATGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGGCAAGTATAAAAGCCATATATTTACTATCAACTCAATGGACA  893

seq1  GACATTTTGTTTTATGTGCTCAGTCCAGTTTCCCTATGTTGCTAGTAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTGTTTTATGTGCTCAGTCCAGTTTCCCTATGTTGCTAGTAATT  943

seq1  ATTATGTTGGTAATAATTCCTCTTTCACATGGGTCTCGTTCAGGGCTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTGGTAATAATTCCTCTTTCACATGGGTCTCGTTCAGGGCTGTA  993

seq1  AACTTCATACATGATCTTGAAGCAAATTCCAAAATGTGATGGGGTTTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATACATGATCTTGAAGCAAATTCCAAAATGTGATGGGGTTTAAT  1043

seq1  CGAAAAAGTAATATGTGTGATGTCAACAAGTTAGGGAACATGGAGAAAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAGTAATATGTGTGATGTCAACAAGTTAGGGAACATGGAGAAAGT  1093

seq1  CATTTAGCACCATCCCACAGAAAGTGAGATTCATCCCCTGTCCTTATACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCACCATCCCACAGAAAGTGAGATTCATCCCCTGTCCTTATACT  1143

seq1  CTGACATCTCCTCTCCAAGTGAAAGTTTGAAAGAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCTCCTCTCCAAGTGAAAGTTTGAAAGAGAATTC  1183


seq1: chr6_25906198_25907114
seq2: B6Ng01-310E16.g_67_985

seq1  GAATTCATGGGTATAGCTTCTGACCGACATTCCTAGGAAACACAATCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTATAGCTTCTGACCGACATTCCTAGGAAACACAATCTCA  50

seq1  CAGAAACATTTCTGCTCCTCTGGCTCTTAAAATCATTCCAGCCTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATTTCTGCTCCTCTGGCTCTTAAAATCATTCCAGCCTGTCTTT  100

seq1  CTTACGGATTCTTGATTTTATAGGGCCTTAACCCTGTACAAAGAACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGATTCTTGATTTTATAGGGCCTTAACCCTGTACAAAGAACTAAA  150

seq1  GAGAACTAAAATATGCAGAGAGTTAGAAAAATAATTTCCCTCAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTAAAATATGCAGAGAGTTAGAAAAATAATTTCCCTCAGGAAATA  200

seq1  GCATACCAATTGGATATGCAACACCAAATGGTCAGCCCTGCAAACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCAATTGGATATGCAACACCAAATGGTCAGCCCTGCAAACATACA  250

seq1  TAGAAGTAAACTACAAACTGAACATTTTGTACTTATAAACATGAGTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAAACTACAAACTGAACATTTTGTACTTATAAACATGAGTGTAC  300

seq1  ACACATGCACATAGATATATGTATATAACAGCTAAAGAAAAGAAGTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACATAGATATATGTATATAACAGCTAAAGAAAAGAAGTGGTG  350

seq1  AATTTGCTAGAGAGAAGCAAAGGGCTCTGGAGGGAGAAAAGTGGAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTAGAGAGAAGCAAAGGGCTCTGGAGGGAGAAAAGTGGAGGCAG  400

seq1  AGATGATATAATTACATTATAGTCTCAAAAATAAAATCATAATTAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATATAATTACATTATAGTCTCAAAAATAAAATCATAATTAAAATG  450

seq1  CATGATATATTTTAAATAATCTATTTTCATACTCTATTTAACATACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATATTTTAAATAATCTATTTTCATACTCTATTTAACATACTAAA  500

seq1  ACTTACTGAAATTTTATTTGAGTACAAATTTTTTCTGTAATTGAGTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGAAATTTTATTTGAGTACAAATTTTTTCTGTAATTGAGTGGCC  550

seq1  ACATTAAGAAAATTTGTCCAAGAAATAATATAAATAATTTTAAATGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGAAAATTTGTCCAAGAAATAATATAAATAATTTTAAATGTTTA  600

seq1  AAGAATTCATTGAGTAAACATATAAATGTAGAAGTTCGACATATTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCATTGAGTAAACATATAAATGTAGAAGTTCGACATATTTAATA  650

seq1  AAAACAAATAATCAATTCATTAACCAATCCAGAAAAGGACTAATTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATAATCAATTCATTAACCAATCCAGAAAAGGACTAATTGTTCT  700

seq1  CAGATACAAATGTAGTTGTAACTACTCTTGAACATCTATTGTACAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAAATGTAGTTGTAACTACTCTTGAACATCTATTGTACAAAACT  750

seq1  GAAATTCATTACTTCATTCTGTAGCCATCATTCTCTTAATTTGTGAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTACTTCATTCTGTAGCCATCATTCTCTTAATTTGTGAGAGT  800

seq1  CAACCATTAAAATGGAGAATGAAATGACAAGTATAGCACTAGTTGAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTAAAATGGAGAATGAAATGACAAGTATAGCACTAGTTGAAAGA  850

seq1  ATTTCAAAAAGAAACAAAAATGATAACGAGTACATACATTGCCATTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAAAGAAACAAAAATGATAACGAGTACATACATTGCCATTGGTG  900

seq1  AGGGGGTGA--GGGTTGGG  917
      |||||||||  ||||||||
seq2  AGGGGGTGAGGGGGTTGGG  919


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