BAC Information

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BAC

Clone NameB6Ng01-310H16
Chromosome6 (Build37)
Map Location 129,271,760 - 129,466,924
singlet/doubletdoublet
Overlap gene4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik
Upstream geneTulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69
Downstream geneGabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H16.bB6Ng01-310H16.g
ACCGA102443GA102444
length1,2211,189
definitionB6Ng01-310H16.b B6Ng01-310H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,271,760 - 129,272,971)(129,465,735 - 129,466,924)
sequence
gaattcctgactgagaatgaatggaggagacaagaatccccagaggaaac
tgctctagtagagtttcccaccttgacctcaaccagcttctgtgtttccc
aggtttgtttctatttcaacttccacaatacaaacccagggcatcacaac
tctttaagccactaagttgtctaaatgctgcgagatccttccctcccttt
gaagatgaacagtagcaagttatcttggaatacctagagcaacataggtt
ttagggtctcctggttttaagtcacatggagtctattacgttttcttctt
ccttcagaactcttcatctcctctccccatagcccactttcttgtttaca
gcctgtacccctccatgcttgcacacacatataaaatgtaaatgctaaga
tcacataagacaaaagacctgtggtagttgaagagatttttattttaatg
atgaccagcgttaatgtctatacctccctttcttcaagatcattttggtg
ttatccagaatctgagtgaaacagcttttggaatttaggctaacctccat
ggattcttcaaggtcacaaagcttcttttcttcatgttcctctctacttc
cgggtgctcacgttctgttcataccgactcatcacgaaatttgtgtcctt
tactctttcagcaactatggcaacagcaaatccaggttacctcaagtctt
tcagtttggcagagacctgtggcgagttgcctggccctcactggtgacac
tgggacttcagtcacaatagtttctccccttttgccttccttcacagttc
aacgtgaatcatgtattatttgagggcaaacaaagcattttttgtgctca
ccctgtcctgcagctcttgtttttcttctggaagatgtcactgaattttg
gacaagcagagggatttccctctttattctttatgccctctcgtgtgctc
cactgagatggatcacttctgagcaaggcccttcatgggccatagcttca
aatgcaccaaactcgatgatgcagcagtaccacgccaagcttggtttaat
gtaaggctttgtagtcactatttcaatgaagaataacaattcatgtacat
gtttgtcagtcaaatagacttaaagttgaatgtcgatggaaagaataaca
cattcacagaacaatcggaaacactgtcccttcgttaccttgcaatggaa
gaaaatctcttcaaagggcac
gaattcaggcatcagtgacagcctaggtcaccacattctggaaatgaaaa
ccacaccgagttcccaaacgcaatgctagtcggcaggttgccctacatgc
accgccaaaccttttagtacatcttcaaacctgaccccctatcttagtgt
tctgagtccactcacatgtaatggtgctctggagagtgctgtcatggtca
aaagcaatgacagtcacttcataaggcggcggggccccatcttccccgtt
ttctggacggctcaggcagcagcggaagcatactgaagtcaggccacaca
ggagaagcagtgcgccaaccaccaccagcaacctgcaagagcccacacac
aaatccaacctgtggtcaactggtttcccagctctgacctaaccatactt
taatctccaatcacgatcgttgttcttcttttagagaacactaataaggc
ttcaaccgtgagggtttcattttgcatatatcagttattgatttttcagc
aagactatgccggtcaggagagcaaacaacactgaagatagtttgaaggg
gctgattcttacttcactgtaaagaagtgtttcttaagcacattctgggg
agaggcactaaaatcttttgttgttggctgaagggactgtattgaaatag
gaaaccgtagcgtattgtcacataggctagaggtgaactaaggaaacttt
actgtgaaatgtatctatgtttcttattcacactaagagccagcatatga
aaaactttttttttaaaaaagaaaatcacataataaatgaagtctctttg
agggtgttatgtatctcaaacttaccatatataccagagatgcacccagt
cagtagtcaggcaactgtggacaaagaatgaagtttattatatttaaaaa
aaatagtgcaagctgcaataatcatgttgttatacttaataccacactat
aatttaaaaacatcaagacctactcttttaatattttaatttttaattta
tttatttatttatttattatgagaaaggtcttccatgttgtaacctttgc
tggcctggactttactattacacagactggtcttgaaactcacagagtcc
tactgcttcttgcctcctagtgctgggattagctgtactacattgtctgc
ttagaattactttatgaaaaggtcccagagtgtgtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129271760_129272971
seq2: B6Ng01-310H16.b_46_1266

seq1  GAATTCCTGACTGAGAATGAATGGAGGAGACAAGAATCCCCAGAGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTGAGAATGAATGGAGGAGACAAGAATCCCCAGAGGAAAC  50

seq1  TGCTCTAGTAGAGTTTCCCACCTTGACCTCAACCAGCTTCTGTGTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGTAGAGTTTCCCACCTTGACCTCAACCAGCTTCTGTGTTTCCC  100

seq1  AGGTTTGTTTCTATTTCAACTTCCACAATACAAACCCAGGGCATCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTTCTATTTCAACTTCCACAATACAAACCCAGGGCATCACAAC  150

seq1  TCTTTAAGCCACTAAGTTGTCTAAATGCTGCGAGATCCTTCCCTCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGCCACTAAGTTGTCTAAATGCTGCGAGATCCTTCCCTCCCTTT  200

seq1  GAAGATGAACAGTAGCAAGTTATCTTGGAATACCTAGAGCAACATAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAACAGTAGCAAGTTATCTTGGAATACCTAGAGCAACATAGGTT  250

seq1  TTAGGGTCTCCTGGTTTTAAGTCACATGGAGTCTATTACGTTTTCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTCCTGGTTTTAAGTCACATGGAGTCTATTACGTTTTCTTCTT  300

seq1  CCTTCAGAACTCTTCATCTCCTCTCCCCATAGCCCACTTTCTTGTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAACTCTTCATCTCCTCTCCCCATAGCCCACTTTCTTGTTTACA  350

seq1  GCCTGTACCCCTCCATGCTTGCACACACATATAAAATGTAAATGCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTACCCCTCCATGCTTGCACACACATATAAAATGTAAATGCTAAGA  400

seq1  TCACATAAGACAAAAGACCTGTGGTAGTTGAAGAGATTTTTATTTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAGACAAAAGACCTGTGGTAGTTGAAGAGATTTTTATTTTAATG  450

seq1  ATGACCAGCGTTAATGTCTATACCTCCCTTTCTTCAAGATCATTTTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGCGTTAATGTCTATACCTCCCTTTCTTCAAGATCATTTTGGTG  500

seq1  TTATCCAGAATCTGAGTGAAACAGCTTTTGGAATTTAGGCTAACCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGAATCTGAGTGAAACAGCTTTTGGAATTTAGGCTAACCTCCAT  550

seq1  GGATTCTTCAAGGTCACAAAGCTTCTTTTCTTCATGTTCCTCTCTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTCAAGGTCACAAAGCTTCTTTTCTTCATGTTCCTCTCTACTTC  600

seq1  CGGGTGCTCACGTTCTGTTCATACCGACTCATCACGAAATTTGTGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTCACGTTCTGTTCATACCGACTCATCACGAAATTTGTGTCCTT  650

seq1  TACTCTTTCAGCAACTATGGCAACAGCAAATCCAGGTTACCTCAAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTCAGCAACTATGGCAACAGCAAATCCAGGTTACCTCAAGTCTT  700

seq1  TCAGTTTGGCAGAGACCTGTGGCGAGTTGCCTGGCCCTCACTGGTGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGGCAGAGACCTGTGGCGAGTTGCCTGGCCCTCACTGGTGACAC  750

seq1  TGGGACTTCAGTCACAATAGTTTCTCCCCTTTTGCCTTCCTTCACAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTCAGTCACAATAGTTTCTCCCCTTTTGCCTTCCTTCACAGTTC  800

seq1  AACGTGAATCATGTATTATTTGAGGGCAAACAAAGCATTTTTTGTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAATCATGTATTATTTGAGGGCAAACAAAGCATTTTTTGTGCTCA  850

seq1  CCCTGTCCTGCAGCTCTTGTTTTTCTTCTGGAAGATGTCACTGAATTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTGCAGCTCTTGTTTTTCTTCTGGAAGATGTCACTGAATTTTG  900

seq1  GACAAGCAGAGGGATTTTCCTCTTTATTCTTTATGCCCTCTCGTGTGCTC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACAAGCAGAGGGATTTCCCTCTTTATTCTTTATGCCCTCTCGTGTGCTC  950

seq1  CACTGAGATGGATCACTTCTGAGCAAGGCCCTTCAT-GGCCATAGCTTCA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTGAGATGGATCACTTCTGAGCAAGGCCCTTCATGGGCCATAGCTTCA  1000

seq1  AATGCACCAACCTCGATGATGCAGCAGTACCACGCCAAGCTTGGTTTAAT  1049
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AATGCACCAAACTCGATGATGCAGCAGTACCACGCCAAGCTTGGTTTAA-  1049

seq1  TGTTAGGCTTTGTAGTCACTATTTCAATGAAG-ATAAC-ATTCATGTACA  1097
      ||| |||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TGTAAGGCTTTGTAGTCACTATTTCAATGAAGAATAACAATTCATGTACA  1099

seq1  TGTTTGTCAGTCAAATTAGACTTAAAGT--GATGTCGATGGAAAGGAATA  1145
      ||||||||||||||| ||||||||||||   |||||||||||||| |  |
seq2  TGTTTGTCAGTCAAA-TAGACTTAAAGTTGAATGTCGATGGAAAGAATAA  1148

seq1  CACA-TCACAG-ACAAAACGAGACACTG-CTCTTCGTGTTCCTTTGGATG  1192
      |||| |||||| ||||   || |||||| | |||||| | ||||   |||
seq2  CACATTCACAGAACAATCGGAAACACTGTCCCTTCGT-TACCTTGCAATG  1197

seq1  GAAGAAA---TCTTC-AAGGGCAC  1212
      |||||||   ||||| ||||||||
seq2  GAAGAAAATCTCTTCAAAGGGCAC  1221

seq1: chr6_129465735_129466924
seq2: B6Ng01-310H16.g_68_1256 (reverse)

seq1  TGTTACA-----TTGGACTTTTTCA-AAAGTAATTCTTAGCAGAACATAG  44
      |||||||     | |||| |||||| ||||||||||| ||||| |||  |
seq2  TGTTACACACTCTGGGACCTTTTCATAAAGTAATTCTAAGCAG-ACAATG  49

seq1  TAGTACACGCCTTTAATCCCAGCACTAGGGAGGC-AGAGGCAGGTAGAAC  93
      ||||||| ||   |||||||||||||| |||||| ||| ||| |||| ||
seq2  TAGTACA-GC---TAATCCCAGCACTA-GGAGGCAAGAAGCA-GTAGGAC  93

seq1  TCTGTGAG-TTCAAGACCAGTCTGGTGTAAATAGTAAAGTTCCAGGCCAG  142
      |||||||| |||||||||||||| |||| |||||||||| ||||||||||
seq2  TCTGTGAGTTTCAAGACCAGTCT-GTGT-AATAGTAAAG-TCCAGGCCAG  140

seq1  C-AAGGTTACAACATG--AGACCTTTCTCAATAAATAAATAAATAAATAA  189
      | ||||||||||||||  ||||||||||||   |||||||||||||||||
seq2  CAAAGGTTACAACATGGAAGACCTTTCTCA--TAATAAATAAATAAATAA  188

seq1  ATAAAATAAAAATTAAAATATTAAAAAGAGTAGGTCTTGATGTTTTTAAA  239
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAATTAAAAATTAAAATATT-AAAAGAGTAGGTCTTGATGTTTTTAAA  237

seq1  TTATAGTGTGGTATTAAGTATAACAACATGATTATTGCAGCTTGCACTAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGTGGTATTAAGTATAACAACATGATTATTGCAGCTTGCACTAT  287

seq1  TTTTTTTAAATATAATAAACTTCATTCTTTGTCCACAGTTGCCTGACTAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATATAATAAACTTCATTCTTTGTCCACAGTTGCCTGACTAC  337

seq1  TGACTGGGTGCATCTCTGGTATATATGGTAAGTTTGAGATACATAACACC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTGCATCTCTGGTATATATGGTAAGTTTGAGATACATAACACC  387

seq1  CTCAAAGAGACTTCATTTATTATGTGATTTTCTTTTTT-AAAAAAAAGTT  438
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAAAGAGACTTCATTTATTATGTGATTTTCTTTTTTAAAAAAAAAGTT  437

seq1  TTTCATATGCTGGCTCTTAGTGTGAATAAGAAACATAGATACATTTCACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGCTGGCTCTTAGTGTGAATAAGAAACATAGATACATTTCACA  487

seq1  GTAAAGTTTCCTTAGTTCACCTCTAGCCTATGTGACAATACGCTACGGTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTTCCTTAGTTCACCTCTAGCCTATGTGACAATACGCTACGGTT  537

seq1  TCCTATTTCAATACAGTCCCTTCAGCCAACAACAAAAGATTTTAGTGCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCAATACAGTCCCTTCAGCCAACAACAAAAGATTTTAGTGCCT  587

seq1  CTCCCCAGAATGTGCTTAAGAAACACTTCTTTACAGTGAAGTAAGAATCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGAATGTGCTTAAGAAACACTTCTTTACAGTGAAGTAAGAATCA  637

seq1  GCCCCTTCAAACTATCTTCAGTGTTGTTTGCTCTCCTGACCGGCATAGTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCAAACTATCTTCAGTGTTGTTTGCTCTCCTGACCGGCATAGTC  687

seq1  TTGCTGAAAAATCAATAACTGATATATGCAAAATGAAACCCTCACGGTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAAATCAATAACTGATATATGCAAAATGAAACCCTCACGGTTG  737

seq1  AAGCCTTATTAGTGTTCTCTAAAAGAAGAACAACGATCGTGATTGGAGAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTATTAGTGTTCTCTAAAAGAAGAACAACGATCGTGATTGGAGAT  787

seq1  TAAAGTATGGTTAGGTCAGAGCTGGGAAACCAGTTGACCACAGGTTGGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATGGTTAGGTCAGAGCTGGGAAACCAGTTGACCACAGGTTGGAT  837

seq1  TTGTGTGTGGGCTCTTGCAGGTTGCTGGTGGTGGTTGGCGCACTGCTTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGGGCTCTTGCAGGTTGCTGGTGGTGGTTGGCGCACTGCTTCT  887

seq1  CCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAG  937

seq1  AAAACGGGGAAGATGGGGCCCCGCCGCCTTATGAAGTGACTGTCATTGCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGGGAAGATGGGGCCCCGCCGCCTTATGAAGTGACTGTCATTGCT  987

seq1  TTTGACCATGACAGCACTCTCCAGAGCACCATTACATGTGAGTGGACTCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATGACAGCACTCTCCAGAGCACCATTACATGTGAGTGGACTCA  1037

seq1  GAACACTAAGATAGGGGGTCAGGTTTGAAGATGTACTAAAAGGTTTGGCG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAAGATAGGGGGTCAGGTTTGAAGATGTACTAAAAGGTTTGGCG  1087

seq1  GTGCATGTAGGGCAACCTGCCGACTAGCATTGCGTTTGGGAACTCGGTGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTAGGGCAACCTGCCGACTAGCATTGCGTTTGGGAACTCGGTGT  1137

seq1  GGTTTTCATTTCCAGAATGTGGTGACCTAGGCTGTCACTGATGCCTGAAT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCATTTCCAGAATGTGGTGACCTAGGCTGTCACTGATGCCTGAAT  1187

seq1  TC  1190
      ||
seq2  TC  1189