BAC Information

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BAC

Clone NameB6Ng01-310I11
Chromosome6 (Build37)
Map Location 61,712,998 - 61,825,671
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310I11.bB6Ng01-310I11.g
ACCGA102481GA102482
length1,1951,035
definitionB6Ng01-310I11.b B6Ng01-310I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,712,998 - 61,714,225)(61,824,637 - 61,825,671)
sequence
gaattctagtcactcactgaagactttcaagtttgtccattgtaaactgc
catttaatatgaagttctcagttgcttctgggaactgatactttttcacc
ttcttccttgattttctgttgccttttaactgtgatttctaagatttagt
atcctatacagtatttgggcagccagtatatgcatcaatattctatctgc
aagactgtaataagaactgtttcacatgcattatatatagtcttataggt
aattggaatttaactaggctacaattaaaacagcagcagtgatgccacat
tgtctccctaagatttatctgcttttcttcctcaccatgtatactcaccc
gtttttccctttgtcagtctcttcctcctttccttctcttcatttctaaa
agggttagcttagaaaatcattcgaaatctgaactcacttagtagtgtga
tgaatttgctttgaaaactattcgagcatttataaatgagttgaacattg
aattaatgaagtaaattacaaaggcaaactgattagtcttatttcacaaa
agatctttatagttgctgtccagcatgggggagggggggtctgactgaaa
aattcacacagaagagaaaagagaccgtttgctctacgagaccaaccctt
cccatacaatttgtttcattgtttatccttcatgctttttttcagaaccg
tttctattatgatgacactggcttaaattttaggttgctaattgaatcca
taatctaagtaaatttttagtgtgtggaaagaacatggccattcagtttc
ttgaaagccatgtcacttctcaggaaaaggccacatttatttttatcatt
tgagtcacgtaagtacatgggtttcatgtagccacaccctcgtctccttc
tagaaacagtgtttggaaggatgcattctttttgacccaggagaccttgg
ggtcactgtgctatgtgacagtttagcagatgtttctcagctgatctcac
taagttctctttatgctcacctcccatgtctcacattcttttgttaattt
aaatataacctagatatacctttattctttgtgaaaatatttttggtatt
tagccaatgtccccttcatggtattgaatccattggaacaacctaagttt
cctaatgactatgctgatgatcaactatgtcatcagcaattgagg

gaattcaggtgatagtcacgggcagtcataactcagattaaacagttcaa
ctaacaaatggaaaagttatcttaatttctcattataagtatgcttaaat
agatcagtgattatcagcatttcgaaaagcttaatttgtcttagattgat
attttggaaagcaatgttaatcaattctaaaaataaattttaaaaccata
aaaagggagtcccacaataattagactcaacagacaaaaataaccatacc
cagttttgaaaaatttataagtagcttatacacagatgatgacaataata
atacatcaagtagctagagcactgtgaaggtccaacacaacaaaattctt
ctaaagccgaagaggtaggcagacaataggtatataggtagttgataaat
gttatatcgatatctgtacatcaaaaatcagtacatataaacattgtaca
tgtatacttcaattgaagattattagattcttttctaagcataatgtatg
aagattaggttgaaatattgattcgtgtattcaaccaaagaacaacgcct
gtgcttatcccaagtttgtcactgctaatactggtcttatcaacataaaa
gcccagacccatgctcacacaggagaggttttcagctgagtgtatagcat
atttgtacacagtttcctttaatagaagtgcaaatgtaaacaatagctgt
gtttgacagcgaagatttacgtatttaatcatgggcagaaacattctact
gtcaaaagctagtctggtatgacctgagtttgagggttctcattcatcaa
tgactgagtggcatttcaagagggatttcacagaattctcatttaatgcc
catttaataagcctcttcggagtgagccacgaatgatatttttcatcatt
attgattgctttacccactggtagacaaatatacaaactgtacatgaagg
aaagaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcaagtaga
gtgctatgtttttcttatctcttttcttctctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61712998_61714225
seq2: B6Ng01-310I11.b_45_1239

seq1  GAATTCTAGTCACTCACTGAAGACTTTCAAGTTTGTCCATTGTAAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCACTCACTGAAGACTTTCAAGTTTGTCCATTGTAAACTGC  50

seq1  CATTTAATATGAAGTTCTCAGTTGCTTCTGGGAACTGATACTTTTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATATGAAGTTCTCAGTTGCTTCTGGGAACTGATACTTTTTCACC  100

seq1  TTCTTCCTTGATTTTCTGTTGCCTTTTAACTGTGATTTCTAAGATTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTGATTTTCTGTTGCCTTTTAACTGTGATTTCTAAGATTTAGT  150

seq1  ATCCTATACAGTATTTGGGCAGCCAGTATATGCATCAATATTCTATCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATACAGTATTTGGGCAGCCAGTATATGCATCAATATTCTATCTGC  200

seq1  AAGACTGTAATAAGAACTGTTTCACATGCATTATATATAGTCTTATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTAATAAGAACTGTTTCACATGCATTATATATAGTCTTATAGGT  250

seq1  AATTGGAATTTAACTAGGCTACAATTAAAACAGCAGCAGTGATGCCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAATTTAACTAGGCTACAATTAAAACAGCAGCAGTGATGCCACAT  300

seq1  TGTCTCCCTAAGATTTATCTGCTTTTCTTCCTCACCATGTATACTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTAAGATTTATCTGCTTTTCTTCCTCACCATGTATACTCACCC  350

seq1  GTTTTTCCCTTTGTCAGTCTCTTCCTCCTTTCCTTCTCTTCATTTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCTTTGTCAGTCTCTTCCTCCTTTCCTTCTCTTCATTTCTAAA  400

seq1  AGGGTTAGCTTAGAAAATCATTCGAAATCTGAACTCACTTAGTAGTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGCTTAGAAAATCATTCGAAATCTGAACTCACTTAGTAGTGTGA  450

seq1  TGAATTTGCTTTGAAAACTATTCGAGCATTTATAAATGAGTTGAACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGCTTTGAAAACTATTCGAGCATTTATAAATGAGTTGAACATTG  500

seq1  AATTAATGAAGTAAATTACAAAGGCAAACTGATTAGTCTTATTTCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAAGTAAATTACAAAGGCAAACTGATTAGTCTTATTTCACAAA  550

seq1  AGATCTTTATAGTTGCTGTCCAGCATGGGGGAGGGGGGGTCTGACTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTATAGTTGCTGTCCAGCATGGGGGAGGGGGGGTCTGACTGAAA  600

seq1  AATTCACACAGAAGAGAAAAGAGACCGTTTGCTCTACGAGACCAACCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACACAGAAGAGAAAAGAGACCGTTTGCTCTACGAGACCAACCCTT  650

seq1  CCCATACAATTTGTTTCATTGTTTATCCTTCATGCTTTTTTTCAGAACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACAATTTGTTTCATTGTTTATCCTTCATGCTTTTTTTCAGAACCG  700

seq1  TTTCTATTATGATGACACTGGCTTAAATTTTAGGTTGCTAATTGAATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTATGATGACACTGGCTTAAATTTTAGGTTGCTAATTGAATCCA  750

seq1  TAATCTAAGTAAATTTTTAGTGTGTGGAAAGAACATGGCCATTCAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGTAAATTTTTAGTGTGTGGAAAGAACATGGCCATTCAGTTTC  800

seq1  TTGAAAGCCATGTCACTTCTCAGGAAAAGGCCACATTTATTTTTATCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCCATGTCACTTCTCAGGAAAAGGCCACATTTATTTTTATCATT  850

seq1  TGAGTCACGTAAGTACATGGGTTTCATGTAGCCACACCCTCGTCTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACGTAAGTACATGGGTTTCATGTAGCCACACCCTCGTCTCCTTC  900

seq1  TAGAAACAGTGTTTGGAAGGATGCATTCTTTTTGACCCAGGAGACCTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACAGTGTTTGGAAGGATGCATTCTTTTTGACCCAGGAGACCTTGG  950

seq1  GGTCACTGTTGCTTATGTGACAGGTTTAGCAGATTGTTTCTCAGCTGATC  1000
      |||||||| ||| ||||||||| |||||||||| ||||||||||||||||
seq2  GGTCACTG-TGC-TATGTGACA-GTTTAGCAGA-TGTTTCTCAGCTGATC  996

seq1  TCACTAAAGTTCTCTTTATGCTCA-CTCCCATGTTCTCACATTCTTTTGT  1049
      ||||| |||||||||||||||||| |||||||| ||||||||||||||||
seq2  TCACT-AAGTTCTCTTTATGCTCACCTCCCATG-TCTCACATTCTTTTGT  1044

seq1  TTAATTTTAAATATAA-CTAGATATACTTTTATTCTGTGTGAAAATATTT  1098
      |  | ||||||||||| |||||||||| |||||||| |||||||||||||
seq2  T--AATTTAAATATAACCTAGATATACCTTTATTCTTTGTGAAAATATTT  1092

seq1  TTGGTATTTAGCAAATGTCTCCTTTCCATTGTTATTGGAATCATATGGAA  1148
      |||||||||||| |||||| ||||  || || |||| |||||   |||||
seq2  TTGGTATTTAGCCAATGTCCCCTT--CA-TGGTATT-GAATCCATTGGAA  1138

seq1  CAAACCTTAAATTTTTCTTAATGTAGTCTATAAATGGTGCTCAGAAATAG  1198
      | |||||   |  |||| ||||   | ||||   || || |||       
seq2  C-AACCT---AAGTTTCCTAAT---GACTAT-GCTGATGATCA-------  1173

seq1  AATCAAATATTATGTCATCAGCAATTGAGG  1228
              | ||||||||||||||||||||
seq2  --------ACTATGTCATCAGCAATTGAGG  1195


seq1: chr6_61824637_61825671
seq2: B6Ng01-310I11.g_66_1100 (reverse)

seq1  AAAAGAAGAATAAAAG-----AAAAAAACATAAGCACTCTACTTGCAGAC  45
      ||||| |||| |||||     | |||||||| |||||||||||||| |||
seq2  AAAAG-AGAAGAAAAGAGATAAGAAAAACAT-AGCACTCTACTTGC-GAC  47

seq1  ACACACACACACACACACACACACACACACCATTTCTTTCCTTTCATGTA  95
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  ACACACACACACACACACACACACACACACCA-TTCTTTCC-TTCATGTA  95

seq1  CAGTTTGTATATTTGTCTACCAGTGGGTAAAGCAATCAATAATGATGAAA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTATATTTGTCTACCAGTGGGTAAAGCAATCAATAATGATGAAA  145

seq1  AATATCATTCGTGGCTCACTCCGAAGAGGCTTATTAAATGGGCATTAAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTCGTGGCTCACTCCGAAGAGGCTTATTAAATGGGCATTAAAT  195

seq1  GAGAATTCTGTGAAATCCCTCTTGAAATGCCACTCAGTCATTGATGAATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTGTGAAATCCCTCTTGAAATGCCACTCAGTCATTGATGAATG  245

seq1  AGAACCCTCAAACTCAGGTCATACCAGACTAGCTTTTGACAGTAGAATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTCAAACTCAGGTCATACCAGACTAGCTTTTGACAGTAGAATGT  295

seq1  TTCTGCCCATGATTAAATACGTAAATCTTCGCTGTCAAACACAGCTATTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCATGATTAAATACGTAAATCTTCGCTGTCAAACACAGCTATTG  345

seq1  TTTACATTTGCACTTCTATTAAAGGAAACTGTGTACAAATATGCTATACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTGCACTTCTATTAAAGGAAACTGTGTACAAATATGCTATACA  395

seq1  CTCAGCTGAAAACCTCTCCTGTGTGAGCATGGGTCTGGGCTTTTATGTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAAAACCTCTCCTGTGTGAGCATGGGTCTGGGCTTTTATGTTG  445

seq1  ATAAGACCAGTATTAGCAGTGACAAACTTGGGATAAGCACAGGCGTTGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCAGTATTAGCAGTGACAAACTTGGGATAAGCACAGGCGTTGTT  495

seq1  CTTTGGTTGAATACACGAATCAATATTTCAACCTAATCTTCATACATTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTGAATACACGAATCAATATTTCAACCTAATCTTCATACATTAT  545

seq1  GCTTAGAAAAGAATCTAATAATCTTCAATTGAAGTATACATGTACAATGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAAAGAATCTAATAATCTTCAATTGAAGTATACATGTACAATGT  595

seq1  TTATATGTACTGATTTTTGATGTACAGATATCGATATAACATTTATCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTACTGATTTTTGATGTACAGATATCGATATAACATTTATCAAC  645

seq1  TACCTATATACCTATTGTCTGCCTACCTCTTCGGCTTTAGAAGAATTTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATATACCTATTGTCTGCCTACCTCTTCGGCTTTAGAAGAATTTTG  695

seq1  TTGTGTTGGACCTTCACAGTGCTCTAGCTACTTGATGTATTATTATTGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGGACCTTCACAGTGCTCTAGCTACTTGATGTATTATTATTGTC  745

seq1  ATCATCTGTGTATAAGCTACTTATAAATTTTTCAAAACTGGGTATGGTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTGTATAAGCTACTTATAAATTTTTCAAAACTGGGTATGGTTA  795

seq1  TTTTTGTCTGTTGAGTCTAATTATTGTGGGACTCCCTTTTTATGGTTTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGTTGAGTCTAATTATTGTGGGACTCCCTTTTTATGGTTTTA  845

seq1  AAATTTATTTTTAGAATTGATTAACATTGCTTTCCAAAATATCAATCTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTTTAGAATTGATTAACATTGCTTTCCAAAATATCAATCTAA  895

seq1  GACAAATTAAGCTTTTCGAAATGCTGATAATCACTGATCTATTTAAGCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTAAGCTTTTCGAAATGCTGATAATCACTGATCTATTTAAGCAT  945

seq1  ACTTATAATGAGAAATTAAGATAACTTTTCCATTTGTTAGTTGAACTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAATGAGAAATTAAGATAACTTTTCCATTTGTTAGTTGAACTGTT  995

seq1  TAATCTGAGTTATGACTGCCCGTGACTATCACCTGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAGTTATGACTGCCCGTGACTATCACCTGAATTC  1035


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