BAC Information

Click to search

BAC

Clone NameB6Ng01-310L17
Chromosome6 (Build37)
Map Location 15,972,473 - 16,103,138
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310L17.bB6Ng01-310L17.g
ACCGA102633GA102634
length1,1291,154
definitionB6Ng01-310L17.b B6Ng01-310L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,102,010 - 16,103,138)(15,972,473 - 15,973,636)
sequence
gaattctttagttttccatgcattgagagctttattcaaaccatttccta
gtctctcacactgtcaacagcaaagagaagatcaacaagaacacttatct
tttccatgggtcagaggaaagccactgatgaaattcacgtccagccacat
ggagttcaaaggccctggcttgagtggtgtgcgtgtttattcaggaacat
gtggatctgatgagtggaaggagattggtgcagtatggctcagacgcaag
tgcttgagtctaattgatttttaatgggctggctacctgccaccagatgt
tcctcaattaggtacgccttaaaagccagcacagctgcttcttttctgct
ggctctcgagtgatggaagttttgttacacggtgtcagtcatagtaatac
agaaagctctccatcactcatgacctgggtctagaactgttaatatcacc
ccttgtgtcttctcaaaatatttcaatctagacaacatatgtcacgggca
ttctatttttcatgatgtttcatgccctaaacaaagtaaactcggcaagg
ttctggtccagtagcagcaatggccacacacaaaagttaaagtcacacac
aaagggaatcctgaaagacctaaaaggaacttttaagatatgtttagtct
aataatttttactagtcaatgagtgttgctcattttgtccctacttctgc
atcagttttcaaagcagcaatccaatgacattccttcactcttccttgtg
ctctgtctgtctccttgtctttctgtttctcttgccccatctttttctca
tcttctgtctctgtctctttctctccctgtctttgtctcaatctgtcttt
ccctgtgtatgtctgtgtctgtctatctctgactttttctttgtcactgt
ctgtctgtttatctttgtctgtcttcccctgtctatgtctgtctctgtct
ccgactttgtctgtcactgtttctaactctgtctctgcttgtctcttcct
ttctctgtatctctccttctccctctttcctatttcttcttcttttcctc
cctgagctgctacagtttccttatcaggtgggtaaactttcatattccag
atgacccctttctcattttgattaatgtc

gaattccactctgtcaggttggtgacagacacatttctcctctgggctgt
ctcactggtcctaatcatccaagattctatactgacttagtacgtttctt
atttctgctgtctcatatgaaggcttagtatagggaaagatcatttgtac
tggggcatagttatgtggctgcatctggttagcttctggtgattgccttg
aggtagttcaagttgtagaaaaatgaatggacaataaaggagcagagaac
taacaggatggcttgagcactatccagagaagaaccttactgtcttcccg
atggtattaacttcatggttcagcacctagtgaggtcattactacgtttt
cacatagccacattagcaactaaatttcagccagttttggtatgaacaag
ctactgtggaaccataccaagagctttggcaaatgaagttggccatgttt
tccattagggcttcattgttagactgcatactatatttcattgacacctg
aataaagacaatagagagattttcccaaaaagaaacatgtgagcactctg
ctatcatgacattcaccaagtcttgattgcacagaacaaggcaatagtta
tgtagcgattttactttatctgctacaaaattggttgcatctgaacgtca
ggagccatcttcttgttgcttgtgcattacaggcatttccagatgaactg
atgagaacagaaataagataaatttcatatcaaaatagggtatgcactta
tgtaacttccatttattatccatcccataattagcctccaaacgatgaca
acattgcatacactagcaagcgtttgttgcaaggaccgtgatatagctgt
ctcttgtgagactaggctggggcagagcaaacacagatgtgaatgctcac
agtcaactattggatggatcacaaggcccccaatggaggagctagagaaa
gtatcccaaggagctaagagatctgcaaccctataggtgcaacattatga
ctaccagtacctggagctcttgactctagctgcatatgtatcaaagatgg
cctaggcggcatcactgaaagaagaggccattgacagccaacttatatgc
cccagtacagggaatgccacgtcaaaaactgcattggggtgggatagggg
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16102010_16103138
seq2: B6Ng01-310L17.b_43_1171 (reverse)

seq1  GACATTAATC-AAATGAGAAAGGGGTCATCTTTGGATATG-AAGTTTACC  48
      |||||||||| ||||||||||||||||||| | | ||||| |||||||||
seq2  GACATTAATCAAAATGAGAAAGGGGTCATC-TGGAATATGAAAGTTTACC  49

seq1  CACCTGATAAGG-AACTGTAGCAGCTTCAGGGAGGAAAAGAAGAAGAAAT  97
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CACCTGATAAGGAAACTGTAGCAGC-TCAGGGAGGAAAAGAAGAAGAAAT  98

seq1  AGGAAAAGAGGGAGAAGGAGAGATACAGAGAAAGGAAGAGACAAGCAGAG  147
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-AAAGAGGGAGAAGGAGAGATACAGAGAAAGGAAGAGACAAGCAGAG  147

seq1  ACAGAGTTAGAAACAGTGACAGACAAAGTCGGAGACAGAGACAGACATAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTAGAAACAGTGACAGACAAAGTCGGAGACAGAGACAGACATAG  197

seq1  ACAGGGGAAGACAGACAAAGATAAACAGACAGACAGTGACAAAGAAAAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAAGACAGACAAAGATAAACAGACAGACAGTGACAAAGAAAAAG  247

seq1  TCAGAGATAGACAGACACAGACATACACAGGGAAAGACAGATTGAGACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATAGACAGACACAGACATACACAGGGAAAGACAGATTGAGACAA  297

seq1  AGACAGGGAGAGAAAGAGACAGAGACAGAAGATGAGAAAAAGATGGGGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGAGAGAAAGAGACAGAGACAGAAGATGAGAAAAAGATGGGGCA  347

seq1  AGAGAAACAGAAAGACAAGGAGACAGACAGAGCACAAGGAAGAGTGAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGAAAGACAAGGAGACAGACAGAGCACAAGGAAGAGTGAAGG  397

seq1  AATGTCATTGGATTGCTGCTTTGAAAACTGATGCAGAAGTAGGGACAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTGGATTGCTGCTTTGAAAACTGATGCAGAAGTAGGGACAAAA  447

seq1  TGAGCAACACTCATTGACTAGTAAAAATTATTAGACTAAACATATCTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACACTCATTGACTAGTAAAAATTATTAGACTAAACATATCTTAA  497

seq1  AAGTTCCTTTTAGGTCTTTCAGGATTCCCTTTGTGTGTGACTTTAACTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTTTAGGTCTTTCAGGATTCCCTTTGTGTGTGACTTTAACTTT  547

seq1  TGTGTGTGGCCATTGCTGCTACTGGACCAGAACCTTGCCGAGTTTACTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGCCATTGCTGCTACTGGACCAGAACCTTGCCGAGTTTACTTT  597

seq1  GTTTAGGGCATGAAACATCATGAAAAATAGAATGCCCGTGACATATGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGCATGAAACATCATGAAAAATAGAATGCCCGTGACATATGTTG  647

seq1  TCTAGATTGAAATATTTTGAGAAGACACAAGGGGTGATATTAACAGTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTGAAATATTTTGAGAAGACACAAGGGGTGATATTAACAGTTCT  697

seq1  AGACCCAGGTCATGAGTGATGGAGAGCTTTCTGTATTACTATGACTGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGGTCATGAGTGATGGAGAGCTTTCTGTATTACTATGACTGACA  747

seq1  CCGTGTAACAAAACTTCCATCACTCGAGAGCCAGCAGAAAAGAAGCAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAACAAAACTTCCATCACTCGAGAGCCAGCAGAAAAGAAGCAGCT  797

seq1  GTGCTGGCTTTTAAGGCGTACCTAATTGAGGAACATCTGGTGGCAGGTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCTTTTAAGGCGTACCTAATTGAGGAACATCTGGTGGCAGGTAG  847

seq1  CCAGCCCATTAAAAATCAATTAGACTCAAGCACTTGCGTCTGAGCCATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCATTAAAAATCAATTAGACTCAAGCACTTGCGTCTGAGCCATAC  897

seq1  TGCACCAATCTCCTTCCACTCATCAGATCCACATGTTCCTGAATAAACAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAATCTCCTTCCACTCATCAGATCCACATGTTCCTGAATAAACAC  947

seq1  GCACACCACTCAAGCCAGGGCCTTTGAACTCCATGTGGCTGGACGTGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCACTCAAGCCAGGGCCTTTGAACTCCATGTGGCTGGACGTGAAT  997

seq1  TTCATCAGTGGCTTTCCTCTGACCCATGGAAAAGATAAGTGTTCTTGTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGTGGCTTTCCTCTGACCCATGGAAAAGATAAGTGTTCTTGTTG  1047

seq1  ATCTTCTCTTTGCTGTTGACAGTGTGAGAGACTAGGAAATGGTTTGAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTTTGCTGTTGACAGTGTGAGAGACTAGGAAATGGTTTGAATA  1097

seq1  AAGCTCTCAATGCATGGAAAACTAAAGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAATGCATGGAAAACTAAAGAATTC  1129


seq1: chr6_15972473_15973636
seq2: B6Ng01-310L17.g_65_1218

seq1  GAATTCCACTCTGTCAGGTTGGTGACAGACACATTTCTCCTCTGGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTGTCAGGTTGGTGACAGACACATTTCTCCTCTGGGCTGT  50

seq1  CTCACTGGTCCTAATCATCCAAGATTCTATACTGACTTAGTACGTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTCCTAATCATCCAAGATTCTATACTGACTTAGTACGTTTCTT  100

seq1  ATTTCTGCTGTCTCATATGAAGGCTTAGTATAGGGAAAGATCATTTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTGTCTCATATGAAGGCTTAGTATAGGGAAAGATCATTTGTAC  150

seq1  TGGGGCATAGTTATGTGGCTGCATCTGGTTAGCTTCTGGTGATTGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAGTTATGTGGCTGCATCTGGTTAGCTTCTGGTGATTGCCTTG  200

seq1  AGGTAGTTCAAGTTGTAGAAAAATGAATGGACAATAAAGGAGCAGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTCAAGTTGTAGAAAAATGAATGGACAATAAAGGAGCAGAGAAC  250

seq1  TAACAGGATGGCTTGAGCACTATCCAGAGAAGAACCTTACTGTCTTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGATGGCTTGAGCACTATCCAGAGAAGAACCTTACTGTCTTCCCG  300

seq1  ATGGTATTAACTTCATGGTTCAGCACCTAGTGAGGTCATTACTACGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTAACTTCATGGTTCAGCACCTAGTGAGGTCATTACTACGTTTT  350

seq1  CACATAGCCACATTAGCAACTAAATTTCAGCCAGTTTTGGTATGAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCACATTAGCAACTAAATTTCAGCCAGTTTTGGTATGAACAAG  400

seq1  CTACTGTGGAACCATACCAAGAGCTTTGGCAAATGAAGTTGGCCATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGGAACCATACCAAGAGCTTTGGCAAATGAAGTTGGCCATGTTT  450

seq1  TCCATTAGGGCTTCATTGTTAGACTGCATACTATATTTCATTGACACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGGGCTTCATTGTTAGACTGCATACTATATTTCATTGACACCTG  500

seq1  AATAAAGACAATAGAGAGATTTTCCCAAAAAGAAACATGTGAGCACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACAATAGAGAGATTTTCCCAAAAAGAAACATGTGAGCACTCTG  550

seq1  CTATCATGACATTCACCAAGTCTTGATTGCACAGAACAAGGCAATAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGACATTCACCAAGTCTTGATTGCACAGAACAAGGCAATAGTTA  600

seq1  TGTAGCGATTTTACTTTATCTGCTACAAAATTGGTTGCATCTGAACGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCGATTTTACTTTATCTGCTACAAAATTGGTTGCATCTGAACGTCA  650

seq1  GGAGCCATCTTCTTGTTGCTTGTGCATTACAGGCATTTCCAGATGAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATCTTCTTGTTGCTTGTGCATTACAGGCATTTCCAGATGAACTG  700

seq1  ATGAGAACAGAAATAAGATAAATTTCATATCAAAATAGGGTATGCACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACAGAAATAAGATAAATTTCATATCAAAATAGGGTATGCACTTA  750

seq1  TGTAACTTCCATTTATTATCCATCCCATAATTAGCCTCCAAACGATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTCCATTTATTATCCATCCCATAATTAGCCTCCAAACGATGACA  800

seq1  ACATTGCATACACTAGCAAGCGTTTGTTGCAAGGACCGTGATATAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCATACACTAGCAAGCGTTTGTTGCAAGGACCGTGATATAGCTGT  850

seq1  CTCTTGTGAGACTAGGCTGGGGCAGAGCAAACACAGATGTGAATGCTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGACTAGGCTGGGGCAGAGCAAACACAGATGTGAATGCTCAC  900

seq1  AGTCAACTATTGGATGGATCACAAGGCCCCCAATGGAGGAGCTAGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTATTGGATGGATCACAAGGCCCCCAATGGAGGAGCTAGAGAAA  950

seq1  GTAT-CCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGCAACATTATG  999
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTATCCCAAGGAGCT-AAGAGATCTGCAACCCTATAGGTGCAACATTATG  999

seq1  AACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCATATGTATCAAAA  1049
       ||| ||||||| ||||||||||||||||||||||||||||||||| |||
seq2  -ACT-ACCAGTA-CCTGGAGCTCTTGACTCTAGCTGCATATGTATC-AAA  1045

seq1  GATGGCCTAGGCGGCCATCACTGGAAAGAGAGGCCCATTGGACAGGCAAA  1099
      |||||||||||||| |||||||| ||  ||||| ||||| ||||| ||| 
seq2  GATGGCCTAGGCGG-CATCACTGAAAGAAGAGG-CCATT-GACAGCCAA-  1091

seq1  CTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAATGGGAATGG  1149
        ||||||||||||||||| ||||||||||  | |||||| ||     ||
seq2  -CTTATATGCCCCAGTACA-GGGAATGCCA-CGTCAAAAACTGCATTGGG  1138

seq1  GTGGG-TAGGGGAGTG  1164
      ||||| ||||||||||
seq2  GTGGGATAGGGGAGTG  1154


| Home | SequenceCutter | Blast | Download |