BAC Information

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BAC

Clone NameB6Ng01-311A21
Chromosome6 (Build37)
Map Location 105,013,414 - 105,014,506
singlet/doubletsinglet
Overlap geneLOC384470
Upstream geneCntn6
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A21.bB6Ng01-311A21.g
ACCGA102867GA102868
length9441,075
definitionB6Ng01-311A21.b B6Ng01-311A21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattctttgtttagctctgagctccaacctttttgttttccattttat
attaggtatttagctcatttacatttccaattctataccaaaagtccccc
atacccacccacccccactcccctacccacccattccccctttttggccc
tggcgttcccctgtactggggcatataaagtttgcaagtccaatggtcct
ctctttccagtgatggccgactaggccgtcttttgatacatatgcagcta
gagtcaagagctccggggtactggttagttcataatgttgttccacctat
agggttgcagatccctttagctccttgggttctttctctagctcctccat
tgggagccctatgatccatccattagctgactgtgagcatccacttctgt
gtttgcaaggccctggcatagtctcacaagagacagctacatctgggtcc
ttttgataaaatcttgctagtgtatgcaatggtgtcagagtttggatgct
gattatggggtggatccctggatatggcagtctctacatggtccatcctt
tcatctcagctccaaactttgtctctgtaactccttccatgggtgttttg
ttcccaattctaaggaggggcatagtgtccacacttcagccttcattctt
cttgagtttcatgtggttagcaaattgtatcttatatcttgggtatccta
ggtttggggctaatgtccacttatcagtgagtatatattgtgtgagttcc
tttgtgaatgtgttacctcactcaggatgatgccctccaggtccatagat
ttggctaggaatttcataaattcattctttttaatagctgagtagtactc
cattgtgtagatgtaccacattttctgtatccattcctctgttgaggggc
atctgggttctttccagcttctggctattataaataagctgcta

gaattcctgtattacagaaggaaggtggttgagatcagaaaaaaaaaaaa
aaaaaaaaaaaaagcccataagtgacaggcagccacccagaaatttttac
ccccagaggacaaagaggccaagaaccttgcagaaaagttggctaggttc
atagcagacaggggtcctgaagtggagatcatcgccttccatgagaacaa
tcgtgagaatcaggccttcagttttctctatgatcccaacagccaagggt
acagatagtacaggcaaaagctggaggagttctggaaagccaaggcggtc
tccacaggctccctcctggctcctgctcccaatcccagcctgtggcaaaa
tgtctgccccagaatctctgtcaggaactgtgccccctatcactgcccgc
cccacccaagtggccccagaacctgctgtcaaacccactccatccatccc
tgggaagcccactatcacagccgctgtgaagaggaagtggaaaagcctgt
ggggcctgaagaggacaaagtggagcttccacctgctgaactggcacaga
gggacatagatgcctcacattcacctctgtcttaaggggtttggctatga
gaaggggaaacctgtgggcccggtgggtgtcacagagctgtctgatgcac
aaaagaagcagctgaatgaacagcaggagatgcagcagatgtatggcatg
atgatgcagcacaagcatgccatgcaagacatgcagtttctgtgtgagag
ggtgctgcagcaaccccagcatggctatgacagtgatgaggaggtagaca
gtgaactgggcacctgggagcaccagctgcgacgcatggagatggacaag
atacgggagtgggcagagcagctgacacagaatggatctgggcaagtact
tcatcggtgactttctgccacccgaggagctggagagtcatggagacttc
aagtctgatgatggcagagagcagatactcagagtacaagagtttaaacg
atgtgaaaacatgctacagatgctcatggagatggcctgaaagaaggcga
gggcttgcactgaagaacgagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105013414_105014506
seq2: B6Ng01-311A21.g_67_1141 (reverse)

seq1  GATGCTCTGTCCCTCAGTGCCCAGCCCCTCGCCCTCTTTCCAGCCCATCT  50
      ||||||| || | ||||||  ||  |||||||| ||||| ||| ||||||
seq2  GATGCTC-GTTCTTCAGTG--CAAGCCCTCGCCTTCTTT-CAGGCCATCT  46

seq1  TCATGAGCATCTGTTAGCCAATGTTTTCCACCATCCGTTTAAACTCCTTG  100
       |||||||||||| ||||  ||||||||   ||| |||||||||| ||||
seq2  CCATGAGCATCTG-TAGC--ATGTTTTC--ACAT-CGTTTAAACT-CTTG  89

seq1  TACTCTGAGTATTCTGGCTCTCTGCCATCATTCAGGGCCTTGAAGGTCTC  150
      ||||||||||| ||| |||||||||||||| |||  | |||||| |||||
seq2  TACTCTGAGTA-TCT-GCTCTCTGCCATCA-TCA--GACTTGAA-GTCTC  133

seq1  CATGAACTTCTCCAGCTCCTCGGGTGGCAGAAAGTCACCGATGAAGTACT  200
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  CATGA--CTCTCCAGCTCCTCGGGTGGCAGAAAGTCACCGATGAAGTACT  181

seq1  TGCCCAGATCCA-TCTGTGTCAGCTGCTCTGCCCACTCCCGTATCTTGTC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGATCCATTCTGTGTCAGCTGCTCTGCCCACTCCCGTATCTTGTC  231

seq1  CATCTCCATGCGTCGCAGCTGGTGCTCCCAGGTGCCCAGTTCACTGTCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATGCGTCGCAGCTGGTGCTCCCAGGTGCCCAGTTCACTGTCTA  281

seq1  CCTCCTCATCACTGTCATAGCCATGCTGGGGTTGCTGCAGCACCCTCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATCACTGTCATAGCCATGCTGGGGTTGCTGCAGCACCCTCTCA  331

seq1  CACAGAAACTGCATGTCTTGCATGGCATGCTTGTGCTGCATCATCATGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACTGCATGTCTTGCATGGCATGCTTGTGCTGCATCATCATGCC  381

seq1  ATACATCTGCTGCATCTCCTGCTGTTCATTCAGCTGCTTCTTTTGTGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTGCTGCATCTCCTGCTGTTCATTCAGCTGCTTCTTTTGTGCAT  431

seq1  CAGACAGCTCTGTGACACCCACCGGGCCCACAGGTTTCCCCTTCTCATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCTCTGTGACACCCACCGGGCCCACAGGTTTCCCCTTCTCATAG  481

seq1  CCAAACCCCTTAAGACAGAGGTGAATGTGAGGCATCTATGTCCCTCTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCCTTAAGACAGAGGTGAATGTGAGGCATCTATGTCCCTCTGTG  531

seq1  CCAGTTCAGCAGGTGGAAGCTCCACTTTGTCCTCTTCAGGCCCCACAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAGCAGGTGGAAGCTCCACTTTGTCCTCTTCAGGCCCCACAGGC  581

seq1  TTTTCCACTTCCTCTTCACAGCGGCTGTGATAGTGGGCTTCCCAGGGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTTCCTCTTCACAGCGGCTGTGATAGTGGGCTTCCCAGGGATG  631

seq1  GATGGAGTGGGTTTGACAGCAGGTTCTGGGGCCACTTGGGTGGGGCGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTGGGTTTGACAGCAGGTTCTGGGGCCACTTGGGTGGGGCGGGC  681

seq1  AGTGATAGGGGGCACAGTTCCTGACAGAGATTCTGGGGCAGACATTTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGGGGGCACAGTTCCTGACAGAGATTCTGGGGCAGACATTTTGC  731

seq1  CACAGGCTGGGATTGGGAGCAGGAGCCAGGAGGGAGCCTGTGGAGACCGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTGGGATTGGGAGCAGGAGCCAGGAGGGAGCCTGTGGAGACCGC  781

seq1  CTTGGCTTTCCAGAACTCCTCCAGCTTTTGCCTGTACTATCTGTACCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTCCAGAACTCCTCCAGCTTTTGCCTGTACTATCTGTACCCTT  831

seq1  GGCTGTTGGGATCATAGAGAAAACTGAAGGCCTGATTCTCACGATTGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGGGATCATAGAGAAAACTGAAGGCCTGATTCTCACGATTGTTC  881

seq1  TCATGGAAGGCGATGATCTCCACTTCAGGACCCCTGTCTGCTATGAACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAGGCGATGATCTCCACTTCAGGACCCCTGTCTGCTATGAACCT  931

seq1  AGCCAACTTTTCTGCAAGGTTCTTGGCCTCTTTGTCCTCTGGGGGTAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTTTTCTGCAAGGTTCTTGGCCTCTTTGTCCTCTGGGGGTAAAA  981

seq1  ATTTCTGGGTGGCTGCCTGTCACTTATGGGCTTTTTTTTTTTTTTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGTGGCTGCCTGTCACTTATGGGCTTTTTTTTTTTTTTTTTTT  1031

seq1  TTTTTTCTGATCTCAACCACCTTCCTTCTGTAATACAGGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGATCTCAACCACCTTCCTTCTGTAATACAGGAATTC  1075


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