BAC Information

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BAC

Clone NameB6Ng01-311H19
Chromosome6 (Build37)
Map Location 23,218,134 - 23,219,280
singlet/doubletsinglet
Overlap geneCadps2
Upstream geneWnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311H19.bB6Ng01-311H19.g
ACCGA103192GA103193
length7961,133
definitionB6Ng01-311H19.b B6Ng01-311H19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagaggaatcttgaatggctgagaagcacctaaagaaatg
ttcaaagtctttaatgatcagagaaatgcaaatcaaaacgaccctgagat
tccaccatacacccatcagaatggctaaaatcaaaacctcaggtgacaac
acatgttggagaggatgtggagaaagaggaacactcctcaattgctggtg
ggattgcaaactggtacaaccattctggaaatcaatctggaggttcctca
gaaaattagaaatagatccacctaaacacccagcaatatcactcttggga
atatatgcaaaagataccccaacatgctacagggcacatgttccactatg
ttctatttgtgatagccagaaactggaaacaacccagatgtcccacaaga
gaagaatggatacagaaaatgtggttcatttacacaatggaatactactc
agccattaagaaagagttccctgagttttgcagacaaatggatagaacta
gataatatcatccctagtgaggtaactcagactcagaaggacatgtgtgg
tatgtactcactaataattggatattagaaagaaaaaaaaaagcagaatg
cccaggaaacaggccacagaactcaaaaaggtcaacaagctgaagggccc
aagtgaggatgcctcagtcctacttgggagggaggagaaagcaatcacaa
gtggggagggagggaaggacctggagggaaagtgggcagggggttggtta
gcaggaagggggtagggacaatagtactatgatacgtaatagagtg
gaattcatctgaggatttgatttgtggtaacttgagagtctgcagcacaa
aacaatttgtatgtggattacactctaggaaccaagaaaatgattttcct
ggtaaatttttaaatggagatggaaatttcttttaatgatgtaatgcagt
gctactttgaaaacttcagcgtgtattagagtcttccggaggcttgttat
tctgtaggttactgggtcttatcagtaattcctggtttcaccggtttagg
ctgttgcctaagggccctgtggttctgacaaatccaaagagggtgctgat
agtttgaggtcagaatggaaatctcacatgcctgacatgcacgcacgcac
gcacgcacacacacacacacacacacacacacacgcgcgcgcgcacacgc
acacacacactctcacactccacccctatatgggaaccactaataagcag
cactaagtggaaggtcttctgcatgaaagcctcgattctctgttttcagc
cacatcaaaaaaattgacttttggggaaaaaaaaatttgagtaaattttt
gcccccacaaaatttttgttgagtagatatattattttaaagctcccagc
tgttaaagataaaatataggctagtacctttttctcttgaagcacaaaca
tccaagtcttctgcttgtgaggtctgtcttaacagttttggatgctctct
aacagtcacatccttaacatgttagaagaggaatagttccacacgaatct
gggctgtgtaatccctaacacaatgtgtataatttcccaatagggcatgg
ggaaatcacgaatttcccttattttgttgtcaagtacaattcaaaagccc
tcgtgattaatatatcgtcccaataaacatgaagaatgtactttattctt
atgacaacgagtgtgaaatcactgcggacctaccacagtcaagtacgtgc
tctggggggatttgtgtgcattgtcttcactctaagtactaatcacaact
tcttttcttttttcttttttttttttttcttggtggtggggacggtatct
tacattattctttacagttgggcaagcattcacattcacactttgcatac
tccaatcttgatgagcgtctttcagtttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23218134_23219280
seq2: B6Ng01-311H19.g_65_1197

seq1  GAATTCATCTGAGGATTTGATTTGTGGTAACTTGAGAGTCTGCAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAGGATTTGATTTGTGGTAACTTGAGAGTCTGCAGCACAA  50

seq1  AACAATTTGTATGTGGATTACACTCTAGGAACCAAGAAAATGATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGTATGTGGATTACACTCTAGGAACCAAGAAAATGATTTTCCT  100

seq1  GGTAAATTTTTAAATGGAGATGGAAATTTCTTTTAATGATGTAATGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTTTAAATGGAGATGGAAATTTCTTTTAATGATGTAATGCAGT  150

seq1  GCTACTTTGAAAACTTCAGCGTGTATTAGAGTCTTCCGGAGGCTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTGAAAACTTCAGCGTGTATTAGAGTCTTCCGGAGGCTTGTTAT  200

seq1  TCTGTAGGTTACTGGGTCTTATCAGTAATTCCTGGTTTCACCGGTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTTACTGGGTCTTATCAGTAATTCCTGGTTTCACCGGTTTAGG  250

seq1  CTGTTGCCTAAGGGCCCTGTGGTTCTGACAAATCCAAAGAGGGTGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTAAGGGCCCTGTGGTTCTGACAAATCCAAAGAGGGTGCTGAT  300

seq1  AGTTTGAGGTCAGAATGGAAATCTCACATGCCTGACATGCACGCACGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGTCAGAATGGAAATCTCACATGCCTGACATGCACGCACGCAC  350

seq1  GCACGCACACACACACACACACACACACACACACGCGCGCGCGCACACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACACACACACACACACACACACACACACGCGCGCGCGCACACGC  400

seq1  ACACACACACTCTCACACTCCACCCCTATATGGGAACCACTAATAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCTCACACTCCACCCCTATATGGGAACCACTAATAAGCAG  450

seq1  CACTAAGTGGAAGGTCTTCTGCATGAAAGCCTCGATTCTCTGTTTTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTGGAAGGTCTTCTGCATGAAAGCCTCGATTCTCTGTTTTCAGC  500

seq1  CACATCAAAAAAATTGACTTTTGGGGAAAAAAAAATTTGAGTAAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAAAAAAATTGACTTTTGGGGAAAAAAAAATTTGAGTAAATTTTT  550

seq1  GCCCCCACAAAATTTTTGTTGAGTAGATATATTATTTTAAAGCTCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACAAAATTTTTGTTGAGTAGATATATTATTTTAAAGCTCCCAGC  600

seq1  TGTTAAAGATAAAATATAGGCTAGTACCTTTTTCTCTTGAAGCACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGATAAAATATAGGCTAGTACCTTTTTCTCTTGAAGCACAAACA  650

seq1  TCCAAGTCTTCTGCTTGTGAGGTCTGTCTTAACAGTTTTGGATGCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTCTTCTGCTTGTGAGGTCTGTCTTAACAGTTTTGGATGCTCTCT  700

seq1  AACAGTCACATCCTTAACATGTTAGAAGAGGAATAGTTCCACACGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCACATCCTTAACATGTTAGAAGAGGAATAGTTCCACACGAATCT  750

seq1  GGGCTGTGTAATCCCTAACACAATGTGTATAATTTCCCAATAGGGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTAATCCCTAACACAATGTGTATAATTTCCCAATAGGGCATGG  800

seq1  GGAAATCACGAATTTCCCTTATTTTGTTGTCAAGTACAATTCAAAAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACGAATTTCCCTTATTTTGTTGTCAAGTACAATTCAAAAGCCC  850

seq1  TCGTGATTAATATATCGTCCCAATAAACATGAAGAATGTACTTTATTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTAATATATCGTCCCAATAAACATGAAGAATGTACTTTATTCTT  900

seq1  ATGACAACGAGTGTGAAATCACTGCGGACCTACCACAGTCAAGTACGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACGAGTGTGAAATCACTGCGGACCTACCACAGTCAAGTACGTGC  950

seq1  TCT-GGGGGATTTGTGTGCATTGTCTTTCACTCTAAGTACTTAAATCCAC  999
      ||| ||||||||||||||||||||| |||||||||||||||  ||||   
seq2  TCTGGGGGGATTTGTGTGCATTGTC-TTCACTCTAAGTACT--AATC--A  995

seq1  CAACTTTCTTTTTCTTTTTTCTTTTTTTTTTTTTTTCCTTGTGGT-GGGA  1048
      ||||||   |||||||||||| ||||||||||||||| | ||||| ||||
seq2  CAACTT--CTTTTCTTTTTTC-TTTTTTTTTTTTTTCTTGGTGGTGGGGA  1042

seq1  CGGTATCTTACCATTATTCTTTACAGTTTGGCAGGCAATTCACATTTCAA  1098
      |||||||||| ||||||||||||||||| |||| || |||||||||   |
seq2  CGGTATCTTA-CATTATTCTTTACAGTTGGGCAAGC-ATTCACATT--CA  1088

seq1  CACTTTTCATTTACCTTCACAATCTTGATGAGCGTC-TTCAGTTGGTAAA  1147
      |||||| ||  |||  || ||||||||||||||||| ||||||| |||||
seq2  CACTTTGCA--TAC--TC-CAATCTTGATGAGCGTCTTTCAGTTTGTAAA  1133