BAC Information

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BAC

Clone NameB6Ng01-311I22
Chromosome6 (Build37)
Map Location 99,934,404 - 99,935,186
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311I22.bB6Ng01-311I22.g
ACCGA103246GA103247
length7831,153
definitionB6Ng01-311I22.b B6Ng01-311I22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcagtgaagggattttagaagacgtagctaatcaagctgtctc
cctgtgtaaaggaacaaacccagcaacccctcactgtgaacgtgctccgc
ttctactgaataacagcaaaaagaaaggcttgttagccgcccaggcccgg
ttctggcaggtgggacacagcaattgcttgccaaaatgtgagcccatggg
actatttgaagggaggatggccaggaagcacgaagctgccatacagagga
acccgctgcgctgctcttacgatgatcctcttccttcagtcgagcccact
ttggatttcttcccttctgtgattgatttgtttgtttgtcttgagacagc
agctcccgctaaagcccaggctggcctggaactcttaatcctcttgcctc
ggcctctcccgtgcagagtgcagatgggcatcttgaagctcatcttcctt
tcatttgattgactgttttcctcctcatcgtcttgctgcttaatgatctc
agccccaggcttccaaggcaactggccaagaagattaagttggtgtttga
agttgagcagctctcttctcgcatacctctcccctctcttctcctttcac
atcccacaacctcagaatcgtggccacacagcaccaatctttcaacccac
tcaagcctgtctttctaaaaccccaatgcttcttgaggtttgactcggag
ccagttcccaacaagcattctttacagagggctggagagagagacagaga
gagactgggagagggagagggagagggagaggg
gaattccccttaaagagatagcccctctggctatctatcccttgctttag
ggaagatgagcagggatgagagccctgggatgtatgcttgttataatgtg
tgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcggcccgc
actttcgccatggtagcataggcttttgctgcagtggaggcgggacaatc
tcctcagattcggtttgccgctctaaaagaaattatgctgcgttatgccg
tggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatcc
tgtggaaggcacgtctgattgcatgaaggttcagtgtcctagttcccttc
ccccaggaaaaaacgacacgggagctggccaagacctctctgggtgatga
gcctaagggatggctttgtgtagggcccctatgcttgcacactggggatc
agacctctaccttcacccatgaggcttgcttgcagcaattaagatctggc
catagattaatcaacatcctggccttttgatgcacctgccgcaagcaaaa
cacaatctccccaggagtggcttgacataatcgagaggtagtcagtgata
agactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctg
tttgtcacccaaggacgggtaaggggcatggctgcggggggctatctaca
gacattctctctgccagaaaagaaaaaagggggagatgttaggagcaggt
gtggcggcagtcctaaaggcgccagggactgtagctaagtcatatgactt
gcacctgacttcctcatataaaccacaaacatcttgagagctgcgcaggt
gtaccaggatacaggtgaatccagtctgatggagatatgcccctgctgcc
ctgattagctgaagctgcatgccttggtgaggtggcgtggcctgctgtgc
gtgatgggaactgagagtataaaggagtggagaggcccacggtcggggag
atataacaggggagatattaaaacagggagaatttataacaggagaatta
accacgtagattaaaacaagtaaatttaaaacagtagatttaaaacgtgg
gattacttgtagattaccatgtgaatatcaacacgagagcactctatgtt
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99934404_99935186
seq2: B6Ng01-311I22.b_41_823 (reverse)

seq1  CCCTCTCCCTCTCCCTCTCCCTCTCCCAGTCTCTCTCTGTCTCTCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTCTCCCTCTCCCTCTCCCAGTCTCTCTCTGTCTCTCTCTCC  50

seq1  AGCCCTCTGTAAAGAATGCTTGTTGGGAACTGGCTCCGAGTCAAACCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTGTAAAGAATGCTTGTTGGGAACTGGCTCCGAGTCAAACCTCA  100

seq1  AGAAGCATTGGGGTTTTAGAAAGACAGGCTTGAGTGGGTTGAAAGATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTGGGGTTTTAGAAAGACAGGCTTGAGTGGGTTGAAAGATTGG  150

seq1  TGCTGTGTGGCCACGATTCTGAGGTTGTGGGATGTGAAAGGAGAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGGCCACGATTCTGAGGTTGTGGGATGTGAAAGGAGAAGAGAG  200

seq1  GGGAGAGGTATGCGAGAAGAGAGCTGCTCAACTTCAAACACCAACTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGTATGCGAGAAGAGAGCTGCTCAACTTCAAACACCAACTTAAT  250

seq1  CTTCTTGGCCAGTTGCCTTGGAAGCCTGGGGCTGAGATCATTAAGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCCAGTTGCCTTGGAAGCCTGGGGCTGAGATCATTAAGCAGCA  300

seq1  AGACGATGAGGAGGAAAACAGTCAATCAAATGAAAGGAAGATGAGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGATGAGGAGGAAAACAGTCAATCAAATGAAAGGAAGATGAGCTTCA  350

seq1  AGATGCCCATCTGCACTCTGCACGGGAGAGGCCGAGGCAAGAGGATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCATCTGCACTCTGCACGGGAGAGGCCGAGGCAAGAGGATTAAG  400

seq1  AGTTCCAGGCCAGCCTGGGCTTTAGCGGGAGCTGCTGTCTCAAGACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGCCAGCCTGGGCTTTAGCGGGAGCTGCTGTCTCAAGACAAAC  450

seq1  AAACAAATCAATCACAGAAGGGAAGAAATCCAAAGTGGGCTCGACTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCAATCACAGAAGGGAAGAAATCCAAAGTGGGCTCGACTGAAG  500

seq1  GAAGAGGATCATCGTAAGAGCAGCGCAGCGGGTTCCTCTGTATGGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATCATCGTAAGAGCAGCGCAGCGGGTTCCTCTGTATGGCAGCT  550

seq1  TCGTGCTTCCTGGCCATCCTCCCTTCAAATAGTCCCATGGGCTCACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTTCCTGGCCATCCTCCCTTCAAATAGTCCCATGGGCTCACATTT  600

seq1  TGGCAAGCAATTGCTGTGTCCCACCTGCCAGAACCGGGCCTGGGCGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCAATTGCTGTGTCCCACCTGCCAGAACCGGGCCTGGGCGGCTA  650

seq1  ACAAGCCTTTCTTTTTGCTGTTATTCAGTAGAAGCGGAGCACGTTCACAG  700
      |||||||                  |||||||||||||||||||||||||
seq2  ACAAGCCNNNNNNNNNNNNNNNNNNCAGTAGAAGCGGAGCACGTTCACAG  700

seq1  TGAGGGGTTGCTGGGTTTGTTCCTTTACACAGGGAGACAGCTTGATTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTTGCTGGGTTTGTTCCTTTACACAGGGAGACAGCTTGATTAGC  750

seq1  TACGTCTTCTAAAATCCCTTCACTGCAGAATTC  783
      |||||||||||||||||||||||||||||||||
seq2  TACGTCTTCTAAAATCCCTTCACTGCAGAATTC  783