BAC Information

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BAC

Clone NameB6Ng01-311K09
Chromosome6 (Build37)
Map Location 5,359,226 - 5,360,337
singlet/doubletsinglet
Overlap geneAsb4
Upstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2
Downstream genePdk4, Dync1i1, Slc25a13, EG667462, EG667468, LOC667471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311K09.bB6Ng01-311K09.g
ACCGA103314GA103315
length1,1021,152
definitionB6Ng01-311K09.b B6Ng01-311K09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacagagactttgtgcttccttgacctgatctgggacgcttaac
cattatatctgagttccagtagtttgaaaaaagtcacccaccatgaggtg
ttttggatgtcggctgggcagggtaaatgtgcttagtttaaaggacacac
acacacacacacacacacacacacacacacaacagttgatgcatctttgg
ctcccccaaagcaataatttattcccacttcatcattttctagcacacag
aagatctagttttgtaagcagacaacctaagtgagaacaattcagtcctt
tttaataggataatgcctttatatgggttttctgatttgctgcaacaata
caaggaggcggagggaagtgattgaagaagttatattaaaaatccattta
ttcattttccttaaaattaaactctgtaattaaaaatacctctttgatca
atttccaaattactgaaatttggaggaattgcaagatattaagtaacaaa
accagctgggtgggtgcaagtggaagctctgacttccagcaaggagaccc
tgtgagatgctaagcagcagatgcagcccgttgccaagcaaacccctgcc
tctaaactcacttgttattaagctgcttctttttaagcggtacccattag
caatccaattgccaattatttttacctacaagactattccaggatatttt
ctcaaattacaaattgtgaggtgttgccaacaggagtctccggcatcctc
aaaatcagttccctcttccggcaggctttctttagtttaagctcccccct
caaagccaaggcagcttcctctctaagctttcagactgggtgtgttatct
tcgccttatagctagaagcatctagaacgggaaattaaaggatggcattt
tctcgggcctgaatgactttattttttttccatcagcgcttctataattt
ttttcttgtttagaggagcctggacctcattatcctgtgacacttaacac
catttagcagaaagatatcagatttggaaacacaaagcactgttttcttg
gtactctgcagttatgactacagaagattatctaaccatcatcaggtgct
ca
gaattctcacctgagaaatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaattcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaataggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggataaagaaaatgtggtacatctacacaatg
gagtactactcagctatttaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccttggaagcagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgcccggggccctagca
aacacagaagtggatgcccacagtcagctaatgggatggatcacagggct
cccaatggaggagctagagaaagtacccaagagctaagggactgcaacct
atagtggaacacattatggactacagtacccggagctcttgactctagct
gcatatgtattcaaagatggcctagtccggtcaattcacttgaaagagaa
gtcattgaaccgctaatttatattgcccagttacaggtcacgcccaaggt
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5359226_5360337
seq2: B6Ng01-311K09.b_45_1146

seq1  GAATTCTACAGAGACTTTGTGCTTCCTTGACCTGATCTGGGACGCTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAGACTTTGTGCTTCCTTGACCTGATCTGGGACGCTTAAC  50

seq1  CATTATATCTGAGTTCCAGTAGTTTGAAAAAAGTCACCCACCATGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATCTGAGTTCCAGTAGTTTGAAAAAAGTCACCCACCATGAGGTG  100

seq1  TTTTGGATGTCGGCTGGGCAGGGTAAATGTGCTTAGTTTAAAGGACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATGTCGGCTGGGCAGGGTAAATGTGCTTAGTTTAAAGGACACAC  150

seq1  ACACACACACACACACACACACACACACACAACAGTTGATGCATCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAACAGTTGATGCATCTTTGG  200

seq1  CTCCCCCAAAGCAATAATTTATTCCCACTTCATCATTTTCTAGCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAAGCAATAATTTATTCCCACTTCATCATTTTCTAGCACACAG  250

seq1  AAGATCTAGTTTTGTAAGCAGACAACCTAAGTGAGAACAATTCAGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAGTTTTGTAAGCAGACAACCTAAGTGAGAACAATTCAGTCCTT  300

seq1  TTTAATAGGATAATGCCTTTATATGGGTTTTCTGATTTGCTGCAACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGGATAATGCCTTTATATGGGTTTTCTGATTTGCTGCAACAATA  350

seq1  CAAGGAGGCGGAGGGAAGTGATTGAAGAAGTTATATTAAAAATCCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGCGGAGGGAAGTGATTGAAGAAGTTATATTAAAAATCCATTTA  400

seq1  TTCATTTTCCTTAAAATTAAACTCTGTAATTAAAAATACCTCTTTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCCTTAAAATTAAACTCTGTAATTAAAAATACCTCTTTGATCA  450

seq1  ATTTCCAAATTACTGAAATTTGGAGGAATTGCAAGATATTAAGTAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAATTACTGAAATTTGGAGGAATTGCAAGATATTAAGTAACAAA  500

seq1  ACCAGCTGGGTGGGTGCAAGTGGAAGCTCTGACTTCCAGCAAGGAGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGGGTGGGTGCAAGTGGAAGCTCTGACTTCCAGCAAGGAGACCC  550

seq1  TGTGAGATGCTAAGCAGCAGATGCAGCCCGTTGCCAAGCAAACCCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGCTAAGCAGCAGATGCAGCCCGTTGCCAAGCAAACCCCTGCC  600

seq1  TCTAAACTCACTTGTTATTAAGCTGCTTCTTTTTAAGCGGTACCCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTCACTTGTTATTAAGCTGCTTCTTTTTAAGCGGTACCCATTAG  650

seq1  CAATCCAATTGCCAATTATTTTTACCTACAAGACTATTCCAGGATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAATTGCCAATTATTTTTACCTACAAGACTATTCCAGGATATTTT  700

seq1  CTCAAATTACAAATTGTGAGGTGTTGCCAACAGGAGTCTCCGGCATCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTACAAATTGTGAGGTGTTGCCAACAGGAGTCTCCGGCATCCTC  750

seq1  AAAATCAGTTCCCTCTTCCGGCAGGCTTTCTTTAGTTTAAGCTCCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTTCCCTCTTCCGGCAGGCTTTCTTTAGTTTAAGCTCCCCCCT  800

seq1  CAAAGCCAAGGCAGCTTCCTCTCTAAGCTTTCAGACTGGGTGTGTTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAGGCAGCTTCCTCTCTAAGCTTTCAGACTGGGTGTGTTATCT  850

seq1  TCGCCTTATAGCTAGAAGCATCTAGAACGGGAAATTAAAGGATGGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTTATAGCTAGAAGCATCTAGAACGGGAAATTAAAGGATGGCATTT  900

seq1  TCTCGGGCCTGAATGACTTTATTTTTTTTCCATCAGCGCTTCTATAA-TT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCGGGCCTGAATGACTTTATTTTTTTTCCATCAGCGCTTCTATAATTT  950

seq1  TTTTCTTGTTTAGAGGAGCCTGGACCTCATTATCCTGTGAACACTTTAAA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||  ||
seq2  TTTTCTTGTTTAGAGGAGCCTGGACCTCATTATCCTGTG-ACACTT--AA  997

seq1  CACCATTTAGCAGAAAGATATCAGATTTGGAAACACAAAGGCACTGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACCATTTAGCAGAAAGATATCAGATTTGGAAACACAAA-GCACTGTTTT  1046

seq1  CTTTGTAACCTCTGCAAGTAATGACTTACAGAAGATAATCTAAACAATTT  1099
      ||| |||  |||||| ||| ||||| |||||||||| |||||| ||   |
seq2  CTTGGTA--CTCTGC-AGTTATGAC-TACAGAAGATTATCTAACCA---T  1089

seq1  CATCAGGTGCTCA  1112
      |||||||||||||
seq2  CATCAGGTGCTCA  1102