BAC Information

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BAC

Clone NameB6Ng01-312D21
Chromosome6 (Build37)
Map Location 8,374,313 - 8,375,428
singlet/doubletsinglet
Overlap geneLOC100036521
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC667028
Downstream geneA430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312D21.bB6Ng01-312D21.g
ACCGA103760GA103761
length1,1871,091
definitionB6Ng01-312D21.b B6Ng01-312D21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggggcataaaaaagaactcagggctgaaaacaatcatgtagaa
acaaagagaatgatagaaagaatcagcaaaagcaatagctggttctttga
aaaatatgaacaagatagataaacccttagccagaataaccagaaggcac
agaaacagtatccagattaacaaaatcagaaatgaataggaagatataac
aacagaaactgagaaaaattcaaaaaatcatcaaatcttactacaaaagc
ctatattaaacaaaactggaaaatctggatgaaatggacaattttctaga
cagataccaaaaccaaagttaaatcaggatcagataaaccatctaaacag
tcccatatcccctaaagaaatagaaccagtcatcaaaagtctcccaacca
aaaaatgcccaggaccagatgggtttagtacagaattatatcagaccttc
aaagaagacctaataccaatactcctcaaactattccacaaaatagaaac
aaaagaacactacccagttcattctatgaagccacaattacactgatacc
taaaccacacaaagacccaacaaagaaagagaacctcagaccaattttct
ttatgaatattgatgcaaaaaaatactcaataaaattcctgccaaccaaa
tccaagaacacatcaaaacgatcattcaccacgaccaagtaggcttcatc
ccaggaatggagggatggttcattatatggaaatccatcagtataaccca
ctatatgaacaaacacaaagaaaaaagcccacatgatcatttcattagat
gctgaaaagtcatttgacaaaattcagcatcacttaatgttccaagtctt
ggaaagatcaggaattcaaggcccatacctaatcaaagtaagagcaatat
acagcaaaccagtagccaacatcaaactacatggagagaaacttgaagca
gtccattgttttgcagatgatatgatagtatacttaagtgacccaaaatt
ccactggaaaactctacagctgataaacaaattcagcaagtggctggaaa
taaatactgaatcaaatcagtagcttctatactcaaaggataacaggctg
agaagaagtaggcaaacaacgaagtcacatagtcaatcatgtaaggtatc
ttgggtgtgaatcctagctaacagggtaagagaactc
gaattcttttccagttgcaatcttctcttccctcagacaccatcctgact
tctaatagtatggagtggtttgatccatgttttaattttcaatgaatgca
ccacccaggatggaagctttggcttctttaagtcagtcttatgtgtattt
gatgcatctatactgttgcatgttggatgaaaacgtgttgaggaacatat
tagtgtagaagatgtatactaatagatatcttagaagtcttctggctgct
atttgacagtggacattgggtaggaggaagggtagcctgtaacataagca
agaagacagcctggaactgagagtctgtcatgtttgactaaggttgtaac
agcaaagtgagattaaatgattgaattttggaaagagtttgggtgtaaat
tcaaccagatttatgaataaaacgaagctggtatagggacaagagtgtag
tcaagaatcaatccaaagttcttggtctaacagtgagaagatggagccac
ccagatatgggctacaagagtgctgggagcaggtctgggcagcaccactg
aaagttggtggtggaggcatgagacacctgacagacatcacacagagctt
tccatagggttttagtctgcagccagtgagctctgctgggcaaagtcagc
gagaacatgcagtgaacgggtcacgtgaggtgatgttggaaaggtatttg
atgccaagagatactcctttttacttgtgttttcattttaaattgggaga
cacagttaaagataacgagaaggaaagacaaggaaaaaaaaaaaaaaacc
tcgtggaaggtcaatagagaaggaaatgctttcttccacagcagtctaga
taagggcccttaaggaacacgagtctagggaacgacttggaatcagcaag
ctcccaaaggcatggctatcaatagttgtctataattcatgacattttac
tttaaaccattactttctgtatgcccagtactgctaccataactgaccca
taaacatactttattaatcctatacattatacattggtacacaacacaga
cctttctaagtttgcatgaaactagtatagcactctgctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8374313_8375428
seq2: B6Ng01-312D21.g_65_1155 (reverse)

seq1  ATAGCAGGAGGTGCTATTACTGGTTTTCATTGCAAACCTTAGAAAGTTCT  50
      |||||||   |||||| |||| | ||||| |||||| ||||||||| |||
seq2  ATAGCAG--AGTGCTA-TACTAG-TTTCA-TGCAAA-CTTAGAAAGGTCT  44

seq1  TTGGTGTTGTGTACCCATTGTATAAAATGGTTATTAGGATTAAATAAAGT  100
         |||||||||| ||| |||||  ||||  || ||||||| ||||||| 
seq2  ---GTGTTGTGTA-CCAATGTAT--AATG--TA-TAGGATT-AATAAAG-  83

seq1  TATGTTTATGGGGTCAGGTTTATGGGTAAGCAGTACTGGGCATACAGAAA  150
      ||||||||| |||||||  ||||||   ||||||||||||||||||||||
seq2  TATGTTTAT-GGGTCAG--TTATGG--TAGCAGTACTGGGCATACAGAAA  128

seq1  GTAATGGTTTAAAGTTAAAATTGTCATGAAATTATAAGACAACTATTGAT  200
      |||||||||||||||  ||| ||||||| |||||| ||||||||||||||
seq2  GTAATGGTTTAAAGT--AAAATGTCATG-AATTAT-AGACAACTATTGAT  174

seq1  AGCCATGCC-TTGGGAGCTTTGCTGATTCCAAGTCGTTCCCTAGACTCGT  249
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  AGCCATGCCTTTGGGAGC-TTGCTGATTCCAAGTCGTTCCCTAGACTCGT  223

seq1  GTTCCTTAAGGGCCCTTATCTAGACTGCTGTGGAAG-AAGCATTTCCTTC  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCCTTAAGGGCCCTTATCTAGACTGCTGTGGAAGAAAGCATTTCCTTC  273

seq1  TCTATTGACCTTCCACGAGGTTTTTTTTTTTTTTTCCTTGTCTTTCCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGACCTTCCACGAGGTTTTTTTTTTTTTTTCCTTGTCTTTCCTTC  323

seq1  TCGTTATCTTTAACTGTGTCTCCCAATTTAAAATGAAAACACAAGTAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATCTTTAACTGTGTCTCCCAATTTAAAATGAAAACACAAGTAAAA  373

seq1  AGGAGTATCTCTTGGCATCAAATACCTTTCCAACATCACCTCACGTGACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATCTCTTGGCATCAAATACCTTTCCAACATCACCTCACGTGACC  423

seq1  CGTTCACTGCATGTTCTCGCTGACTTTGCCCAGCAGAGCTCACTGGCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACTGCATGTTCTCGCTGACTTTGCCCAGCAGAGCTCACTGGCTGC  473

seq1  AGACTAAAACCCTATGGAAAGCTCTGTGTGATGTCTGTCAGGTGTCTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAACCCTATGGAAAGCTCTGTGTGATGTCTGTCAGGTGTCTCAT  523

seq1  GCCTCCACCACCAACTTTCAGTGGTGCTGCCCAGACCTGCTCCCAGCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACCACCAACTTTCAGTGGTGCTGCCCAGACCTGCTCCCAGCACT  573

seq1  CTTGTAGCCCATATCTGGGTGGCTCCATCTTCTCACTGTTAGACCAAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCCCATATCTGGGTGGCTCCATCTTCTCACTGTTAGACCAAGAA  623

seq1  CTTTGGATTGATTCTTGACTACACTCTTGTCCCTATACCAGCTTCGTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGATTCTTGACTACACTCTTGTCCCTATACCAGCTTCGTTTT  673

seq1  ATTCATAAATCTGGTTGAATTTACACCCAAACTCTTTCCAAAATTCAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAATCTGGTTGAATTTACACCCAAACTCTTTCCAAAATTCAATC  723

seq1  ATTTAATCTCACTTTGCTGTTACAACCTTAGTCAAACATGACAGACTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTCACTTTGCTGTTACAACCTTAGTCAAACATGACAGACTCTC  773

seq1  AGTTCCAGGCTGTCTTCTTGCTTATGTTACAGGCTACCCTTCCTCCTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGCTGTCTTCTTGCTTATGTTACAGGCTACCCTTCCTCCTACC  823

seq1  CAATGTCCACTGTCAAATAGCAGCCAGAAGACTTCTAAGATATCTATTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCACTGTCAAATAGCAGCCAGAAGACTTCTAAGATATCTATTAG  873

seq1  TATACATCTTCTACACTAATATGTTCCTCAACACGTTTTCATCCAACATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTTCTACACTAATATGTTCCTCAACACGTTTTCATCCAACATG  923

seq1  CAACAGTATAGATGCATCAAATACACATAAGACTGACTTAAAGAAGCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTATAGATGCATCAAATACACATAAGACTGACTTAAAGAAGCCAA  973

seq1  AGCTTCCATCCTGGGTGGTGCATTCATTGAAAATTAAAACATGGATCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCATCCTGGGTGGTGCATTCATTGAAAATTAAAACATGGATCAAA  1023

seq1  CCACTCCATACTATTAGAAGTCAGGATGGTGTCTGAGGGAAGAGAAGATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCATACTATTAGAAGTCAGGATGGTGTCTGAGGGAAGAGAAGATT  1073

seq1  GCAACTGGAAAAGAATTC  1116
      ||||||||||||||||||
seq2  GCAACTGGAAAAGAATTC  1091