BAC Information

Click to search

BAC

Clone NameB6Ng01-312D24
Chromosome6 (Build37)
Map Location 44,788,345 - 44,789,506
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312D24.bB6Ng01-312D24.g
ACCGA103766GA103767
length1,1841,176
definitionB6Ng01-312D24.b B6Ng01-312D24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtgtttgaatatgtagtctacagcttagaatatgcttcttta
atatagaaccttcatcttcatattctaaaaattagtgagttcaatatatt
acagattctctcagacatatatgtctcttagagtcttttcttctataatt
tatacatgtaggattcaactgaagatgtacccacgtattccaagcagcag
gtaacctcttcaacttggaaacttataaacagatgagcagtccatattgt
aggaagactccatgtctgactcctgcttcatgtcttttttttttttttta
attaggtattttcttcatttacatttccaacgctatcccaaaattccccc
atacccttccactcccctacccacccactcccacttcttgtccctggcgt
tcccctgtactgaggcatataatgtttgcaagaccaatgggcctctcttt
ccactgatggctgactaggccatcttgtgatacatatgcagctagagaca
cgagctcatgtcttttgacatttgtaatagaacaaatcacatcctctctg
agatactacacccctcatctatacttaaaaaaccatattatgagaaggta
gctgtgatacaaaacaacccccagagcagagagctgaggagagctcatac
tgcccatggtaaatcaccctttacttgtttggttctaacacagctataca
gcctgagccatcaacaacactcacatcagatctgaagtcctgctgttctc
ataacttctgtagttcatcattttacttcagttgggttattaatctattt
caattgattgacagtttgcacagcagtcatttgatttataatttgcacct
aagttattgaatttataatttggacagagctctaaatgcattttttgatt
tatgtgtgtccccatgcaagttataacaaaatcattggcgcttgagcaac
attttactggaagaacaatgtacatttaggcaagtgaattttttaaaggg
ccaaaggaatccttgaattttcttcatgtaaaattaaagaatccaatgct
caataaactgttagaaaaaaattagtgttgtccaagttgaataagtgttc
agtgacagtgttaataatactggaaaatatccaggttccttgttaattgt
tcctcctcaaataggcatagtagattctgcagtt
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttttgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttgattaggatggatgattgct
ttaatgtgttcttggatttggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagatctgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgtttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctagtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgtgtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttgatttcacccctgagtttgatta
tttcctgccatctactcctcttgggtgaatttgctttccttttttctaga
ggttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttctt
cttggaagcaactcagagctatgagtttcctttaaaaaagctttcaatgt
gtccatagttgggtacgttggtggcttcatttcataaaactctaaatgtc
tttaaattctttcttatcttctgaaccaaggatcatgaaaaagaagtttg
ttcagtttccaagtgatgtcggccgtcaagtacttaagtgtaatgaagag
aatcagatcctattaagggcagcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44788345_44789506
seq2: B6Ng01-312D24.b_45_1228 (reverse)

seq1  AACTGCAGATTCCTACTATGGCCTAT----GGAGAGGACAAATGACAAAG  46
      ||||||||| | ||||||| ||||||    |||| | |||| | |||| |
seq2  AACTGCAGAAT-CTACTAT-GCCTATTTGAGGAG-GAACAATTAACAAGG  47

seq1  GGACTTGATATTT--CAGTATATTAAACACTGTCACTG-ACACTTATTC-  92
         || |||||||  ||||||  | ||||||||||||| |||||||||| 
seq2  AACCTGGATATTTTCCAGTATTATTAACACTGTCACTGAACACTTATTCA  97

seq1  ACTTGTAC-ACACTA--TTTTTTCT-ACAGTTATTTGAAGCATT-GATTC  137
      ||||| || ||||||  |||||||| ||||||  ||| |||||| |||||
seq2  ACTTGGACAACACTAATTTTTTTCTAACAGTTTATTG-AGCATTGGATTC  146

seq1  TTT-ATTTTACATGAAG-AAATTCA--GATTCCTTT-GCCCTTT-AAAAA  181
      ||| ||||||||||||| |||||||  ||||||||| ||||||| |||||
seq2  TTTAATTTTACATGAAGAAAATTCAAGGATTCCTTTGGCCCTTTAAAAAA  196

seq1  TTCAACTG-CTAAATGTACAT--GTCTTCCAGT-AAATGTTGCTCAAGCG  227
      ||||  || ||||||||||||   ||||||||| ||||||||||||||||
seq2  TTCACTTGCCTAAATGTACATTGTTCTTCCAGTAAAATGTTGCTCAAGCG  246

seq1  CCAATGA-TTTGTTATAAC-TGCATGGGGGACACACATAAATC-AAAAAT  274
      ||||||| ||||||||||| ||||| ||||||||||||||||| ||||||
seq2  CCAATGATTTTGTTATAACTTGCAT-GGGGACACACATAAATCAAAAAAT  295

seq1  GCATTTAGAGCTCTGTCCAAATTATAAATTCAATAACTTAGGTGCAAATT  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAGCTCTGTCCAAATTATAAATTCAATAACTTAGGTGCAAATT  345

seq1  ATAAATCAAATGACTGCTGTGC-AACTGTCAATCAATTGAAATAGATTAA  373
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAATCAAATGACTGCTGTGCAAACTGTCAATCAATTGAAATAGATTAA  395

seq1  TAACCCAACTGAAGTAAAATGATGAACTACAGAAGTTATGAGAACAGCAG  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAACTGAAGTAAAATGATGAACTACAGAAGTTATGAGAACAGCAG  445

seq1  GACTTCAGATCTGATGTGAGTGTTGTTGATGGCTCAGGCTGTATAGCTGT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGATCTGATGTGAGTGTTGTTGATGGCTCAGGCTGTATAGCTGT  495

seq1  GTTAGAACCAAACAAGTAAAGGGTGATTTACCATGGGCAGTATGAGCTCT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACCAAACAAGTAAAGGGTGATTTACCATGGGCAGTATGAGCTCT  545

seq1  CCTCAGCTCTCTGCTCTGGGGGTTGTTTTGTATCACAGCTACCTTCTCAT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTCTCTGCTCTGGGGGTTGTTTTGTATCACAGCTACCTTCTCAT  595

seq1  AATATGGTTTTTTAAGTATAGATGAGGGGTGTAGTATCTCAGAGAGGATG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTTTTTTAAGTATAGATGAGGGGTGTAGTATCTCAGAGAGGATG  645

seq1  TGATTTGTTCTATTACAAATGTCAAAAGACATGAGCTCGTGTCTCTAGCT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTCTATTACAAATGTCAAAAGACATGAGCTCGTGTCTCTAGCT  695

seq1  GCATATGTATCACAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTATCACAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCC  745

seq1  CATTGGTCTTGCAAACATTATATGCCTCAGTACAGGGGAACGCCAGGGAC  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCTTGCAAACATTATATGCCTCAGTACAGGGGAACGCCAGGGAC  795

seq1  AAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGAAGGGTATGGGGGAATTTT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGAAGGGTATGGGGGAATTTT  845

seq1  GGGATAGCGTTGGAAATGTAAATGAAGAAAATACCTAATTAAAAAAAAAA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCGTTGGAAATGTAAATGAAGAAAATACCTAATTAAAAAAAAAA  895

seq1  AAAAAGACATGAAGCAGGAGTCAGACATGGAGTCTTCCTACAATATGGAC  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACATGAAGCAGGAGTCAGACATGGAGTCTTCCTACAATATGGAC  945

seq1  TGCTCATCTGTTTATAAGTTTCCAAGTTGAAGAGGTTACCTGCTGCTTGG  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCTGTTTATAAGTTTCCAAGTTGAAGAGGTTACCTGCTGCTTGG  995

seq1  AATACGTGGGTACATCTTCAGTTGAATCCTACATGTATAAATTATAGAAG  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTGGGTACATCTTCAGTTGAATCCTACATGTATAAATTATAGAAG  1045

seq1  AAAAGACTCTAAGAGACATATATGTCTGAGAGAATCTGTAATATATTGAA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCTAAGAGACATATATGTCTGAGAGAATCTGTAATATATTGAA  1095

seq1  CTCACTAATTTTTAGAATATGAAGATGAAGGTTCTATATTAAAGAAGCAT  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAATTTTTAGAATATGAAGATGAAGGTTCTATATTAAAGAAGCAT  1145

seq1  ATTCTAAGCTGTAGACTACATATTCAAACACATGAATTC  1162
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGCTGTAGACTACATATTCAAACACATGAATTC  1184