BAC Information

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BAC

Clone NameB6Ng01-312G07
Chromosome6 (Build37)
Map Location 21,525,196 - 21,658,930
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312G07.bB6Ng01-312G07.g
ACCGA103874GA103875
length1,1661,121
definitionB6Ng01-312G07.b B6Ng01-312G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,657,758 - 21,658,930)(21,525,196 - 21,526,320)
sequence
gaattccatatttcatatcacaaagggaaggatttaaagttcataaatgg
aacagacggttgcaacgtcatgacctaataaaatatttattgcctgaacg
aatgccaacagtaaagagacgtcagagtcctgtctgaagaatgttttctt
attttcaagtagatttttatcattttttaaaagttatgacagtaaatgta
taattgattattggggggggcatacattcaaatcaaagaatactgtccag
cttcaacaggaatggtgtccccagccgtgggacagtacaagatactttct
gcttttccacctcatctctgcctcagcagtctgctttatcctgatcatcc
ctttccttggcagaagaccttagtgtccgtcaccgggaagaaagagatca
aattctttattatgattcagatcctcatagcatttcacaaatggaccctt
ggttctccctcagctgctcatccacacatctgatgtattacaatcaacac
agaactgtttttgttacttgaacataatattacttccatcattctaacac
tgggcgtgtctagacttttgacgctatgttgcatattatcatatctaaac
ttcatgctcaataaccatgcaatttatttataaaaaaaaaaccctcaagg
ttttgagtaactttataatattatgttgatctgaactcatagctgtcctg
ggtcaaatggagatgctgggctactgcaactttgttctttttagaacaag
tttctttgcattcctactgcatacatcttttggagaaaactgcaattcaa
atggacagagcccaaatgtcagttctcatttgaagaacatcttgaccatt
tatctgggggtccagtgagactactcattctttttcttttataccttgca
actaataaattgtaattgggttttctttttagaggcttgtactttcttgc
caaaccatgaggtggaacaggtcaaggatcctgtcatcagtatcaagtga
cttaccacagacctgtctgttgtgagcaaatcgtagagctccaataaatg
ttttagtgcttaaattaatctgtcagatgatgttctgggaggcaataaga
aacaggagacaccagggaagaatagtctctctcgtcccttccagttccag
accagagcaggttcat

gaattcaaatccttccctttatccataacaaaaggctttttgttgtaaat
aataatagttaaacattgaaactactattcattgattgaagggatactga
acatgcagaacataccttacagaaataaaactacaacaagatttgaatta
tttacccttctccattgtatatattggacagtaagatatgtttgtagttt
tagatatagatgttctcattaaagctgttatctgattcttaaagaattat
gtaaaaccaaagtcaaaatttttgaggtctcctgtattctaacttcttat
tgaacaaacccaattatcccaaaattatacagatggactgaattggaatt
tttatacaatgttcaaccaaatcactttagtattgtggcattgttattgt
gcctcaactctaattattaagcagatcgtctccttggatgactttcatga
taactgtgttatgaagatttgtagcagaaattttactcatgcttcaggtt
caagaaaggttctaaaaacctgcctaatgcctgtcttctaaaccagagga
tatcatattctcatgtactaagacttcccgggaaacgtctgtggattact
atctttattcataccatctttcaacagtacctcccatacattttctttag
aaaagataaagaatgagtaggttcttctccagcagagccccataaccata
ccctttgtctttcagtaaagctatacctcggttccacccacatagtgaga
acagtgagagccataagtgaaggctgccctcatcatcttgatgaatgctt
cccactgcagcccttgagtttaaatcacatatgcaatattaaagtatatt
ttgtaacagtattctgaattgtcattcattgaatatcctacttattagta
aaacagatttgcctgcagagaccggatgattcagtagtcagtgcacagct
catgaagttagcagactgatttcaatctaagcactaaagcagcatgggta
attgttgttttgccagatgtggccagggggtggaataaaggaaagagaaa
aagaaacttgccagagctgtaaggataaacaaaatgcagtgcaaaattat
atgatagcataacgaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21657758_21658930
seq2: B6Ng01-312G07.b_46_1211 (reverse)

seq1  ATGAA-CTGCTCTGGTCCTGGACATGAGAAAGAGAACGAGAGAGAACTAT  49
      ||||| |||||||||| |||||  || |||   | ||||||||| |||||
seq2  ATGAACCTGCTCTGGT-CTGGAACTG-GAA--GGGACGAGAGAG-ACTAT  45

seq1  CTCTCCTTGGTGTCTCCCTTGTTTCTTATTTGCCT-CCAG-ACATCATCT  97
         ||| ||||||||||  ||||||||| |||||| |||| |||||||| 
seq2  TCTTCCCTGGTGTCTCC--TGTTTCTTA-TTGCCTCCCAGAACATCATC-  91

seq1  TGACAGATTTATTTAAGCACT-AAACATTTATT-GAGCTCTAACGATTTG  145
      ||||||||| ||||||||||| ||||||||||| ||||||| ||||||||
seq2  TGACAGATTAATTTAAGCACTAAAACATTTATTGGAGCTCT-ACGATTTG  140

seq1  CTCAACAACAGACAAGGTCTGTGGTAAAGTCACTTGATACTGATGACAGG  195
      ||| ||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CTC-ACAACAGAC-AGGTCTGTGGT-AAGTCACTTGATACTGATGACAGG  187

seq1  ATCCTTGACCTGTTCCACCTCATGGTTTGGCAAGAAAGTACAAGCCTCTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGACCTGTTCCACCTCATGGTTTGGCAAGAAAGTACAAGCCTCTA  237

seq1  AAAAGAAAA-CCAATTACAATTTATTAGTTGCAAGGTATAAAAGAAAAAG  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACCCAATTACAATTTATTAGTTGCAAGGTATAAAAGAAAAAG  287

seq1  AATGAGTAGTCTCACTGGACCCCCAGATAAATGGTCAAGATGTTCTTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAGTCTCACTGGACCCCCAGATAAATGGTCAAGATGTTCTTCAA  337

seq1  ATGAGAACTGACATTTGGGCTCTGTCCATTTGAATTGCAGTTTTCTCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACTGACATTTGGGCTCTGTCCATTTGAATTGCAGTTTTCTCCAA  387

seq1  AAGATGTATGCAGTAGGAATGCAAAGAAACTTGTTCTAAAAAGAACAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTATGCAGTAGGAATGCAAAGAAACTTGTTCTAAAAAGAACAAAG  437

seq1  TTGCAGTAGCCCAGCATCTCCATTTGACCCAGGACAGCTATGAGTTCAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAGCCCAGCATCTCCATTTGACCCAGGACAGCTATGAGTTCAGA  487

seq1  TCAACATAATATTATAAAGTTACTCAAAACCTTGAGGGTTTTTTTTTTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATAATATTATAAAGTTACTCAAAACCTTGAGGGTTTTTTTTTTAT  537

seq1  AAATAAATTGCATGGTTATTGAGCATGAAGTTTAGATATGATAATATGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTGCATGGTTATTGAGCATGAAGTTTAGATATGATAATATGCA  587

seq1  ACATAGCGTCAAAAGTCTAGACACGCCCAGTGTTAGAATGATGGAAGTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCGTCAAAAGTCTAGACACGCCCAGTGTTAGAATGATGGAAGTAA  637

seq1  TATTATGTTCAAGTAACAAAAACAGTTCTGTGTTGATTGTAATACATCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTTCAAGTAACAAAAACAGTTCTGTGTTGATTGTAATACATCAG  687

seq1  ATGTGTGGATGAGCAGCTGAGGGAGAACCAAGGGTCCATTTGTGAAATGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGATGAGCAGCTGAGGGAGAACCAAGGGTCCATTTGTGAAATGC  737

seq1  TATGAGGATCTGAATCATAATAAAGAATTTGATCTCTTTCTTCCCGGTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGATCTGAATCATAATAAAGAATTTGATCTCTTTCTTCCCGGTGA  787

seq1  CGGACACTAAGGTCTTCTGCCAAGGAAAGGGATGATCAGGATAAAGCAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACTAAGGTCTTCTGCCAAGGAAAGGGATGATCAGGATAAAGCAGA  837

seq1  CTGCTGAGGCAGAGATGAGGTGGAAAAGCAGAAAGTATCTTGTACTGTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGCAGAGATGAGGTGGAAAAGCAGAAAGTATCTTGTACTGTCC  887

seq1  CACGGCTGGGGACACCATTCCTGTTGAAGCTGGACAGTATTCTTTGATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTGGGGACACCATTCCTGTTGAAGCTGGACAGTATTCTTTGATTT  937

seq1  GAATGTATGCCCCCCCCAATAATCAATTATACATTTACTGTCATAACTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATGCCCCCCCCAATAATCAATTATACATTTACTGTCATAACTTT  987

seq1  TAAAAAATGATAAAAATCTACTTGAAAATAAGAAAACATTCTTCAGACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGATAAAAATCTACTTGAAAATAAGAAAACATTCTTCAGACAG  1037

seq1  GACTCTGACGTCTCTTTACTGTTGGCATTCGTTCAGGCAATAAATATTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGACGTCTCTTTACTGTTGGCATTCGTTCAGGCAATAAATATTTT  1087

seq1  ATTAGGTCATGACGTTGCAACCGTCTGTTCCATTTATGAACTTTAAATCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCATGACGTTGCAACCGTCTGTTCCATTTATGAACTTTAAATCC  1137

seq1  TTCCCTTTGTGATATGAAATATGGAATTC  1173
      |||||||||||||||||||||||||||||
seq2  TTCCCTTTGTGATATGAAATATGGAATTC  1166


seq1: chr6_21525196_21526320
seq2: B6Ng01-312G07.g_66_1186

seq1  GAATTCAAATCCTTCCCTTTATCCATAACAAAAGGCTTTTTGTTGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCTTCCCTTTATCCATAACAAAAGGCTTTTTGTTGTAAAT  50

seq1  AATAATAGTTAAACATTGAAACTACTATTCATTGATTGAAGGGATACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGTTAAACATTGAAACTACTATTCATTGATTGAAGGGATACTGA  100

seq1  ACATGCAGAACATACCTTACAGAAATAAAACTACAACAAGATTTGAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGAACATACCTTACAGAAATAAAACTACAACAAGATTTGAATTA  150

seq1  TTTACCCTTCTCCATTGTATATATTGGACAGTAAGATATGTTTGTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTTCTCCATTGTATATATTGGACAGTAAGATATGTTTGTAGTTT  200

seq1  TAGATATAGATGTTCTCATTAAAGCTGTTATCTGATTCTTAAAGAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAGATGTTCTCATTAAAGCTGTTATCTGATTCTTAAAGAATTAT  250

seq1  GTAAAACCAAAGTCAAAATTTTTGAGGTCTCCTGTATTCTAACTTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCAAAGTCAAAATTTTTGAGGTCTCCTGTATTCTAACTTCTTAT  300

seq1  TGAACAAACCCAATTATCCCAAAATTATACAGATGGACTGAATTGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAACCCAATTATCCCAAAATTATACAGATGGACTGAATTGGAATT  350

seq1  TTTATACAATGTTCAACCAAATCACTTTAGTATTGTGGCATTGTTATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAATGTTCAACCAAATCACTTTAGTATTGTGGCATTGTTATTGT  400

seq1  GCCTCAACTCTAATTATTAAGCAGATCGTCTCCTTGGATGACTTTCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAACTCTAATTATTAAGCAGATCGTCTCCTTGGATGACTTTCATGA  450

seq1  TAACTGTGTTATGAAGATTTGTAGCAGAAATTTTACTCATGCTTCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGTTATGAAGATTTGTAGCAGAAATTTTACTCATGCTTCAGGTT  500

seq1  CAAGAAAGGTTCTAAAAACCTGCCTAATGCCTGTCTTCTAAACCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGGTTCTAAAAACCTGCCTAATGCCTGTCTTCTAAACCAGAGGA  550

seq1  TATCATATTCTCATGTACTAAGACTTCCCGGGAAACGTCTGTGGATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTCTCATGTACTAAGACTTCCCGGGAAACGTCTGTGGATTACT  600

seq1  ATCTTTATTCATACCATCTTTCAACAGTACCTCCCATACATTTTCTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTCATACCATCTTTCAACAGTACCTCCCATACATTTTCTTTAG  650

seq1  AAAAGATAAAGAATGAGTAGGTTCTTCTCCAGCAGAGCCCCATAACCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAAGAATGAGTAGGTTCTTCTCCAGCAGAGCCCCATAACCATA  700

seq1  CCCTTTGTCTTTCAGTAAAGCTATACCTCGGTTCCACCCACATAGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTCTTTCAGTAAAGCTATACCTCGGTTCCACCCACATAGTGAGA  750

seq1  ACAGTGAGAGCCATAAGTGAAGGCTGCCCTCATCATCTTGATGAATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGAGCCATAAGTGAAGGCTGCCCTCATCATCTTGATGAATGCTT  800

seq1  CCCACTGCAGCCCTTGAGTTTAAATCACATATGCAATATTAAAGTATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCAGCCCTTGAGTTTAAATCACATATGCAATATTAAAGTATATT  850

seq1  TTGTAACAGTATTCTGAATTGTCATTCATTGAATATCCTACTTATTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAGTATTCTGAATTGTCATTCATTGAATATCCTACTTATTAGTA  900

seq1  AAACAGATTTGCCTGCAGAGACCGGATGATTCAGTAGTCAGTGCACAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTTGCCTGCAGAGACCGGATGATTCAGTAGTCAGTGCACAGCT  950

seq1  CATGAAGTTAGCAGACTGATTTCAATCTAAGCACTAAAGCAGCATGGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTTAGCAGACTGATTTCAATCTAAGCACTAAAGCAGCATGGGTA  1000

seq1  ATTG-TGTTTTGCCCAGATGTGG-CAGGGGGTGGAATAAAGGAAAGAGAA  1048
      |||| ||||||| |||||||||| ||||||||||||||||||||||||||
seq2  ATTGTTGTTTTG-CCAGATGTGGCCAGGGGGTGGAATAAAGGAAAGAGAA  1049

seq1  AAAGAAAACTTGCCAGAGCTTGTTAGGATAAACAAAATGCAGTGCAAAAT  1098
      |||| |||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AAAG-AAACTTGCCAGAGC-TGTAAGGATAAACAAAATGCAGTGCAAAAT  1097

seq1  TAATATGATAAGCATACAGAAATAAAA  1125
      | ||||||| |||||| |  |||||||
seq2  T-ATATGAT-AGCATA-ACGAATAAAA  1121


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