BAC Information

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BAC

Clone NameB6Ng01-312I12
Chromosome6 (Build37)
Map Location 44,264,381 - 44,360,488
singlet/doubletdoublet
Overlap genenone
Upstream geneTpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I12.bB6Ng01-312I12.g
ACCGA103977GA103978
length4701,107
definitionB6Ng01-312I12.b B6Ng01-312I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,264,381 - 44,264,856)(44,359,386 - 44,360,488)
sequence
tcaaaatgcagattgcaacctctttgaagttagaaaaactccttcatatg
gggttgcttaagactttcagaaaacacagatatttacattatgattcaca
acagtagcaaaattagagttatgaagtagtagtgaaaataattttatggt
tggagtaaccacgatatgaggaactatattaaaggaaggctgagaagcag
tgctgtaggagaaatgttgactataaggtagatgtacaaatgaggggctg
agggtgttgaggaagaggagggagggtgggagcctgcgtccagacagagt
tcctgtgctctgggcaggcagacacaggaggaccgacagacactttccac
tcggaccctggtgggcatctgggtatgtgaagctactgatcccacccagc
atgggctggacaaggggtattctctgttatctgggcttctgggcgacacc
cttgtctctggatatatggg

gaattcttctttcagttttaatatttacctgcttctgccttcctttagca
gttttgctattggatgtagaaagagcaatagggattttagaattggagcc
gtatatacaatatgctttctgttatgtaacaatacattttaagatgaaaa
acactttggacattaatttctttggaagttagtgtagaaaggtgctagtg
ctttcattggtgaattccctgttaaaatatggaaatgggcaaagtttcat
ataaacaggaaaataaaataacaagtgaaagatctaccaaagaaagagga
gagaggccattacatgctattcactatttgatatttctgaaacacagagg
tttcagaacttttccattgtgataaaaatattttacagaacaactttaaa
aagtattaatgttagcacatgctctttgagattttagcatatagctctct
gatctggcacattggcaaggcaagaacatcaaaatgatggaggccataca
tcccaaggtaggcaggaagcagagagaaggcatccaaaaatatattagag
tgaggcagtcaacaaggacatgccttgcaaaatacccatgagctactcct
accagtcaggtcccactttttaaattgtccagcactttgcaaaatagctg
tccaacttgagcttgtaagcaaggtttcatgttttaaaccataacaacac
agtgtatatgataacagttgtgtagaatcacttgctatatagaattctct
tttttaaaagctaagtccttcagctttactgtattgatagaaacagtgct
tcattgtctagggctactaaatatgacactgtgatacatatgtatatgtt
aatatattttaaactgatttttcatggaagtagaagaaaaatgatagata
caattattaaaatatttgacactgtgtatctacactaatagaaatactga
gaaaaaaacatgggctatactgctttacttattcattctttaactgacct
ctaaattatggaatagttttgcatgtccattattattctatcagaagaac
taagaagtggtaagttagatcattgggtgctgtgtcttttttaggtgctc
atgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44264381_44264856
seq2: B6Ng01-312I12.b_47_522

seq1  GAATTCTCAAAATGCAGATTGCAACCTCTTTGAAGTTAGAAAAACTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAATGCAGATTGCAACCTCTTTGAAGTTAGAAAAACTCCTT  50

seq1  CATATGGGGTTGCTTAAGACTTTCAGAAAACACAGATATTTACATTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGGTTGCTTAAGACTTTCAGAAAACACAGATATTTACATTATGA  100

seq1  TTCACAACAGTAGCAAAATTAGAGTTATGAAGTAGTAGTGAAAATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACAGTAGCAAAATTAGAGTTATGAAGTAGTAGTGAAAATAATTT  150

seq1  TATGGTTGGAGTAACCACGATATGAGGAACTATATTAAAGGAAGGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGGAGTAACCACGATATGAGGAACTATATTAAAGGAAGGCTGAG  200

seq1  AAGCAGTGCTGTAGGAGAAATGTTGACTATAAGGTAGATGTACAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGCTGTAGGAGAAATGTTGACTATAAGGTAGATGTACAAATGAG  250

seq1  GGGCTGAGGGTGTTGAGGAAGAGGAGGGAGGGTGGGAGCCTGCGTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGGTGTTGAGGAAGAGGAGGGAGGGTGGGAGCCTGCGTCCAGA  300

seq1  CAGAGTTCCTGTGCTCTGGGCAGGCAGACACAGGAGGACCGACAGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCCTGTGCTCTGGGCAGGCAGACACAGGAGGACCGACAGACACT  350

seq1  TTCCACTCGGACCCTGGTGGGCATCTGGGTATGTGAAGCTACTGATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCGGACCCTGGTGGGCATCTGGGTATGTGAAGCTACTGATCCCA  400

seq1  CCCAGCAGGGGCTGGACAAGGGGCAGCCTCTGATATCAGGGCCCCTGGGC  450
      ||||||| ||||||||||||||| |  ||||| |||| ||||  ||||||
seq2  CCCAGCATGGGCTGGACAAGGGGTATTCTCTGTTATCTGGGCTTCTGGGC  450

seq1  GACACCCTTGTCTCTGGAGATATGGG  476
      |||||||||||||||||| |||||||
seq2  GACACCCTTGTCTCTGGATATATGGG  476


seq1: chr6_44359386_44360488
seq2: B6Ng01-312I12.g_65_1171 (reverse)

seq1  TTCTCATGAGCACCTAAAAAGACCACACCAACCAATGATCTAAACTTACC  50
      ||||||||||||||||||||   |||| || |||||||||| ||||||||
seq2  TTCTCATGAGCACCTAAAAAAGACACAGCACCCAATGATCT-AACTTACC  49

seq1  ACTTCTTAGTTCTCCTGATAGA--TATAATGGACATGCAAAACTA-TCCA  97
      ||||||||||||| ||||||||   |||||||||||||||||||| ||||
seq2  ACTTCTTAGTTCTTCTGATAGAATAATAATGGACATGCAAAACTATTCCA  99

seq1  TAATTTAGAGGTCAGTTAAAGAATGAATAAGTAAAGCAGTATAG-CCATG  146
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAATTTAGAGGTCAGTTAAAGAATGAATAAGTAAAGCAGTATAGCCCATG  149

seq1  -TTTTTTCTCAGTATTTCTATTAGTGTAGATACACAGTGTCAAATATTTT  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCAGTATTTCTATTAGTGTAGATACACAGTGTCAAATATTTT  199

seq1  AATAATTGTATCTATCATTTTTCTTCTACTTCCATGAAAAATCAGTTTAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTATCTATCATTTTTCTTCTACTTCCATGAAAAATCAGTTTAA  249

seq1  AATATATTAACATATACATATGTATCACAGTGTCATATTTAGTAGCCCTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAACATATACATATGTATCACAGTGTCATATTTAGTAGCCCTA  299

seq1  GACAATGAAGCACTGTTTCTATCAATACAGTAAAGCTGAAGGACTTAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAAGCACTGTTTCTATCAATACAGTAAAGCTGAAGGACTTAGCT  349

seq1  TTTAAAAAAGAGAATTCTATATAGCAAGTGATTCTACACAACTGTTATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGAGAATTCTATATAGCAAGTGATTCTACACAACTGTTATCA  399

seq1  TATACACTGTGTTGTTATGGTTTAAAACATGAAACCTTGCTTACAAGCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTGTGTTGTTATGGTTTAAAACATGAAACCTTGCTTACAAGCTC  449

seq1  AAGTTGGACAGCTATTTTGCAAAGTGCTGGACAATTTAAAAAGTGGGACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGACAGCTATTTTGCAAAGTGCTGGACAATTTAAAAAGTGGGACC  499

seq1  TGACTGGTAGGAGTAGCTCATGGGTATTTTGCAAGGCATGTCCTTGTTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTAGGAGTAGCTCATGGGTATTTTGCAAGGCATGTCCTTGTTGA  549

seq1  CTGCCTCACTCTAATATATTTTTGGATGCCTTCTCTCTGCTTCCTGCCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCACTCTAATATATTTTTGGATGCCTTCTCTCTGCTTCCTGCCTA  599

seq1  CCTTGGGATGTATGGCCTCCATCATTTTGATGTTCTTGCCTTGCCAATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGATGTATGGCCTCCATCATTTTGATGTTCTTGCCTTGCCAATGT  649

seq1  GCCAGATCAGAGAGCTATATGCTAAAATCTCAAAGAGCATGTGCTAACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCAGAGAGCTATATGCTAAAATCTCAAAGAGCATGTGCTAACAT  699

seq1  TAATACTTTTTAAAGTTGTTCTGTAAAATATTTTTATCACAATGGAAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTTTAAAGTTGTTCTGTAAAATATTTTTATCACAATGGAAAAG  749

seq1  TTCTGAAACCTCTGTGTTTCAGAAATATCAAATAGTGAATAGCATGTAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACCTCTGTGTTTCAGAAATATCAAATAGTGAATAGCATGTAAT  799

seq1  GGCCTCTCTCCTCTTTCTTTGGTAGATCTTTCACTTGTTATTTTATTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTCCTCTTTCTTTGGTAGATCTTTCACTTGTTATTTTATTTTC  849

seq1  CTGTTTATATGAAACTTTGCCCATTTCCATATTTTAACAGGGAATTCACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATATGAAACTTTGCCCATTTCCATATTTTAACAGGGAATTCACC  899

seq1  AATGAAAGCACTAGCACCTTTCTACACTAACTTCCAAAGAAATTAATGTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCACTAGCACCTTTCTACACTAACTTCCAAAGAAATTAATGTC  949

seq1  CAAAGTGTTTTTCATCTTAAAATGTATTGTTACATAACAGAAAGCATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTTTTTCATCTTAAAATGTATTGTTACATAACAGAAAGCATATT  999

seq1  GTATATACGGCTCCAATTCTAAAATCCCTATTGCTCTTTCTACATCCAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACGGCTCCAATTCTAAAATCCCTATTGCTCTTTCTACATCCAAT  1049

seq1  AGCAAAACTGCTAAAGGAAGGCAGAAGCAGGTAAATATTAAAACTGAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACTGCTAAAGGAAGGCAGAAGCAGGTAAATATTAAAACTGAAAG  1099

seq1  AAGAATTC  1103
      ||||||||
seq2  AAGAATTC  1107


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