BAC Information

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BAC

Clone NameB6Ng01-313E07
Chromosome6 (Build37)
Map Location 7,626,240 - 7,801,882
singlet/doubletdoublet
Overlap geneAsns, EG667529, C1galt1
Upstream geneLOC545826, Dlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511
Downstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313E07.bB6Ng01-313E07.g
ACCGA104530GA104531
length1,1601,187
definitionB6Ng01-313E07.b B6Ng01-313E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,800,727 - 7,801,882)(7,626,240 - 7,627,446)
sequence
gaattccaatttgctccaaacagataaaagtaggacattttgttaagtga
aacaaaccaataggaggaggacaatgtacagtttcccttacgttaattaa
aactcagcaacagaagattctggctgacaggggctatggggaggtagaat
gggacttgtttatagggtagtgcgtttcagcttcacaggatgcagggctc
tagagtcggacaatgatgatgggtacatcataacagaaatgcaaccacca
ctggactgactgtacaggtaaaactgggtaggatgagcatattaggggtg
ttttatctcacacacacacacacacacacacacacacacacaaacacaca
tcacgtgacagttttctacacatcaatctgtgtgtataatgtgatcccac
cccaaacacagagttttaaaagctaaataaccgtgtaaaatgtattctaa
aagcttggaaaaattaatgagtacacaattttatttatttatttatttat
ttatttatttatttatttggatcacatcactatgcacccttccctgatga
gtacacaattttatttatttatttatttatttacttacttacttatttat
ttggatcacatcactatgcacccctccctgactgtcctgggacctgtaat
gtagaccaacctggcctggaaaaatgagtaagtatcaagtttttattgga
tcacgtcactatgtatacctggctgtcctggccctgaactgtctcatgag
tgctgcaattaaaggtctaggccaccatgcctgaccagggaatgggtaat
tcttgaatggtgagtggctggcggttaaaacacaaggcatattaaaatgt
ttacatggacgcgtggtggcacacacatatctcagcacttggggcctgaa
cacaaaggggtaggacttgaaggcctgcctagggtcagcctgggctacct
gatctcaaatacacatacgttcctcttttttcataaccaaaccaaaaaac
aaaacaaacaaatcagagtgaactgaaattgattaacattttacgtgaag
actgaacaggccatctgtgtggttaatcaccagttgtgttaaagccaatg
tctatttaaataacagattaagctgagacaccttctcagactgctgaaac
tacatcattt
gaattctcatatctggcggcagagacaggtaataggaagaaaaccgatga
tccagaaaggggactctcagttcgagacttggggaaaacagaagacaatc
tgagtcagatggctggcacggcttcctgacaacctccccagactgagtca
tggagaagaaagagttacattccagcctcctagggaccacactgcatgat
tagccacatactaatgtttgtacttgaaataaaaccagcatctagggagg
gaagctttctgtcttaaagtatttctttccttctgcgcctatgaaaaatt
acctgtttctataaaacgttaattatcatgagtgacctggtcatgagggt
atatgaatattcataccatcatatgtacaaaagtcccagtgacactcgtc
aggacatgcaggcaggtcataactatgattccagaccattcgtaagccaa
atatggttcagtagaggaactgaaaatgttgaaaggcaagtctttatcct
gcacagtaaagctcttctattcttcaacaagcccagttaaccctagaaac
cctgggcaagaagaaatggctccaaagaaacttatttttattctatagtc
ctatcaacaaatgaatgaatgcatgaagattgcatttctcctcccagatg
cagcaaactggcttggcaggcacgtagtatttgctaccagaagcaatact
ccaaatgctctaaaatgtttccaagaagccgctgcagccttccctctagg
ccagaaacggcccattgctgttatgatctagtgacacaaaacctgcctgg
catacccacaggacatgatctctccacaccccggtgatagtgtccaggcc
atagcacagcttttaggggacaaactttgctgaaaaccatactttgcagc
cagccgaaagaaactcaaaataagcaactgatctcatttaagctacttcc
cccttctccttgttggttttacactgattttaaagttaccgtgtgcagca
gtagtgcgttcgcccggagaacatcaaacaagtagagttcttcagcagtc
tcttcactctctctcggcttctcaggagagctattaacaaacgaagggtg
atgctctttgcacacaagcagcccttcattgccctcttcatggaataaga
tggattagcggaagccttaagagagaggagggtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_7800727_7801882
seq2: B6Ng01-313E07.b_44_1203 (reverse)

seq1  AAATGATGTAGTTTCTAGCAGTCTG-GAGAGTTGCTCAGC-TAATCTGTT  48
      ||||||||||||||| ||||||||| ||  ||  |||||| |||||||||
seq2  AAATGATGTAGTTTC-AGCAGTCTGAGAAGGTGTCTCAGCTTAATCTGTT  49

seq1  ATT--AATAGACAT--GCTTTTAAACACACT-GTGATTTAAAACACACGA  93
      |||  |||||||||  ||||| | ||| ||| |||||| |  ||||| ||
seq2  ATTTAAATAGACATTGGCTTTAACACA-ACTGGTGATTAACCACACA-GA  97

seq1  TGGCCTG-TCAGTCTCAACGTTAAATTGTTAAATCATTTCAGTTCACCTC  142
      ||||||| |||||||  ||| |||| ||||||   ||||||||||| |||
seq2  TGGCCTGTTCAGTCTTCACG-TAAAATGTTAATCAATTTCAGTTCA-CTC  145

seq1  TGATTTGTTTGTTTTGTTTTTTGGTTTGGTTATG-AAAAAGA-GAACGTA  190
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGATTTGTTTGTTTTGTTTTTTGGTTTGGTTATGAAAAAAGAGGAACGTA  195

seq1  TGTGTATTTGAGATCAGGTAGCCCAGGCTGACCCTAGGCAGGCCTTCAAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTGAGATCAGGTAGCCCAGGCTGACCCTAGGCAGGCCTTCAAG  245

seq1  TCCTACCCCTTTGTGTTCAGGCCCCAAGTGCTGAGATTATGTGTGTGCCA  290
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCTACCCCTTTGTGTTCAGGCCCCAAGTGCTGAGA-TATGTGTGTGCCA  294

seq1  CCACGCGTCCATGTAAACATTTTAATATGCCTTGTGTTTTAACCGCCAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCGTCCATGTAAACATTTTAATATGCCTTGTGTTTTAACCGCCAGC  344

seq1  CACTCACCATTCAAGAATTACCCATTCCCTGGTCAGGCATGGTGGCCTAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCATTCAAGAATTACCCATTCCCTGGTCAGGCATGGTGGCCTAG  394

seq1  ACCTTTAATTGCAGCACTCATGAGACAGTTCAGGGCCAGGACAGCCAGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATTGCAGCACTCATGAGACAGTTCAGGGCCAGGACAGCCAGGT  444

seq1  ATACATAGTGACGTGATCCAATAAAAACTTGATACTTACTCATTTTTCCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGTGACGTGATCCAATAAAAACTTGATACTTACTCATTTTTCCA  494

seq1  GGCCAGGTTGGTCTACATTACAGGTCCCAGGACAGTCAGGGAGGGGTGCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTGGTCTACATTACAGGTCCCAGGACAGTCAGGGAGGGGTGCA  544

seq1  TAGTGATGTGATCCAAATAAATAAGTAAGTAAGTAAATAAATAAATAAAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGTGATCCAAATAAATAAGTAAGTAAGTAAATAAATAAATAAAT  594

seq1  AAATAAAATTGTGTACTCATCAGGGAAGGGTGCATAGTGATGTGATCCAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTGTGTACTCATCAGGGAAGGGTGCATAGTGATGTGATCCAA  644

seq1  ATAAATAAATAAATAAATAAATAAATAAATAAATAAAATTGTGTACTCAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATAAATAAATAAATAAAATTGTGTACTCAT  694

seq1  TAATTTTTCCAAGCTTTTAGAATACATTTTACACGGTTATTTAGCTTTTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCCAAGCTTTTAGAATACATTTTACACGGTTATTTAGCTTTTA  744

seq1  AAACTCTGTGTTTGGGGTGGGATCACATTATACACACAGATTGATGTGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTGTTTGGGGTGGGATCACATTATACACACAGATTGATGTGTA  794

seq1  GAAAACTGTCACGTGATGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGTCACGTGATGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTG  844

seq1  TGTGTGTGAGATAAAACACCCCTAATATGCTCATCCTACCCAGTTTTACC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGATAAAACACCCCTAATATGCTCATCCTACCCAGTTTTACC  894

seq1  TGTACAGTCAGTCCAGTGGTGGTTGCATTTCTGTTATGATGTACCCATCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCAGTCCAGTGGTGGTTGCATTTCTGTTATGATGTACCCATCA  944

seq1  TCATTGTCCGACTCTAGAGCCCTGCATCCTGTGAAGCTGAAACGCACTAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCCGACTCTAGAGCCCTGCATCCTGTGAAGCTGAAACGCACTAC  994

seq1  CCTATAAACAAGTCCCATTCTACCTCCCCATAGCCCCTGTCAGCCAGAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAACAAGTCCCATTCTACCTCCCCATAGCCCCTGTCAGCCAGAAT  1044

seq1  CTTCTGTTGCTGAGTTTTAATTAACGTAAGGGAAACTGTACATTGTCCTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGCTGAGTTTTAATTAACGTAAGGGAAACTGTACATTGTCCTC  1094

seq1  CTCCTATTGGTTTGTTTCACTTAACAAAATGTCCTACTTTTATCTGTTTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTGGTTTGTTTCACTTAACAAAATGTCCTACTTTTATCTGTTTG  1144

seq1  GAGCAAATTGGAATTC  1156
      ||||||||||||||||
seq2  GAGCAAATTGGAATTC  1160

seq1: chr6_7626240_7627446
seq2: B6Ng01-313E07.g_65_1251

seq1  GAATTCTCATATCTGGCGGCAGAGACAGGTAATAGGAAGAAAACCGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATCTGGCGGCAGAGACAGGTAATAGGAAGAAAACCGATGA  50

seq1  TCCAGAAAGGGGACTCTCAGTTCGAGACTTGGGGAAAACAGAAGACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGGGGACTCTCAGTTCGAGACTTGGGGAAAACAGAAGACAATC  100

seq1  TGAGTCAGATGGCTGGCACGGCTTCCTGACAACCTCCCCAGACTGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGATGGCTGGCACGGCTTCCTGACAACCTCCCCAGACTGAGTCA  150

seq1  TGGAGAAGAAAGAGTTACATTCCAGCCTCCTAGGGACCACACTGCATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAAAGAGTTACATTCCAGCCTCCTAGGGACCACACTGCATGAT  200

seq1  TAGCCACATACTAATGTTTGTACTTGAAATAAAACCAGCATCTAGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATACTAATGTTTGTACTTGAAATAAAACCAGCATCTAGGGAGG  250

seq1  GAAGCTTTCTGTCTTAAAGTATTTCTTTCCTTCTGCGCCTATGAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTCTGTCTTAAAGTATTTCTTTCCTTCTGCGCCTATGAAAAATT  300

seq1  ACCTGTTTCTATAAAACGTTAATTATCATGAGTGACCTGGTCATGAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCTATAAAACGTTAATTATCATGAGTGACCTGGTCATGAGGGT  350

seq1  ATATGAATATTCATACCATCATATGTACAAAAGTCCCAGTGACACTCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATATTCATACCATCATATGTACAAAAGTCCCAGTGACACTCGTC  400

seq1  AGGACATGCAGGCAGGTCATAACTATGATTCCAGACCATTCGTAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGCAGGCAGGTCATAACTATGATTCCAGACCATTCGTAAGCCAA  450

seq1  ATATGGTTCAGTAGAGGAACTGAAAATGTTGAAAGGCAAGTCTTTATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTCAGTAGAGGAACTGAAAATGTTGAAAGGCAAGTCTTTATCCT  500

seq1  GCACAGTAAAGCTCTTCTATTCTTCAACAAGCCCAGTTAACCCTAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAAAGCTCTTCTATTCTTCAACAAGCCCAGTTAACCCTAGAAAC  550

seq1  CCTGGGCAAGAAGAAATGGCTCCAAAGAAACTTATTTTTATTCTATAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAAGAAGAAATGGCTCCAAAGAAACTTATTTTTATTCTATAGTC  600

seq1  CTATCAACAAATGAATGAATGCATGAAGATTGCATTTCTCCTCCCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACAAATGAATGAATGCATGAAGATTGCATTTCTCCTCCCAGATG  650

seq1  CAGCAAACTGGCTTGGCAGGCACGTAGTATTTGCTACCAGAAGCAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACTGGCTTGGCAGGCACGTAGTATTTGCTACCAGAAGCAATACT  700

seq1  CCAAATGCTCTAAAATGTTTCCAAGAAGCCGCTGCAGCCTTCCCTCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTCTAAAATGTTTCCAAGAAGCCGCTGCAGCCTTCCCTCTAGG  750

seq1  CCAGAAACGGCCCATTGCTGTTATGATCTAGTGACACAAAACCTGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACGGCCCATTGCTGTTATGATCTAGTGACACAAAACCTGCCTGG  800

seq1  CATACCCACAGGACATGATCTCTCCACACCCCGGTGATAGTGTCCAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCACAGGACATGATCTCTCCACACCCCGGTGATAGTGTCCAGGCC  850

seq1  ATAGCACAGCTTTTAGGGGACAAACTTTGCTGAAAACCATACTTTGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAGCTTTTAGGGGACAAACTTTGCTGAAAACCATACTTTGCAGC  900

seq1  CAGCCGAAAGAAACTCAAAATAAGCAACTGATCTCATTTAAGCTACTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGAAAGAAACTCAAAATAAGCAACTGATCTCATTTAAGCTACTTCC  950

seq1  CCCTTCTCCCTTGTTGGTTTTACAACTGATTTTAAAGTTACCCGTGTGCA  1000
      ||||||| ||||||||||||||| |||||||||||||||| |||||||||
seq2  CCCTTCT-CCTTGTTGGTTTTAC-ACTGATTTTAAAGTTA-CCGTGTGCA  997

seq1  GCAGTAGTGCGGTCGGCCCGGAGAACATCAAACAGGTAGAGTTCCTTCAG  1050
      ||||||||||| || ||||||||||||||||||| |||||||| ||||||
seq2  GCAGTAGTGCGTTC-GCCCGGAGAACATCAAACAAGTAGAGTT-CTTCAG  1045

seq1  CAGTCTC-TCACTCTCCTCCTCGGCCTTCTCAGGGGAAGGAGCCTATTTA  1099
      ||||||| ||||||||   ||||| ||||||||| ||      ||| |||
seq2  CAGTCTCTTCACTCTC--TCTCGG-CTTCTCAGGAGA-----GCTA-TTA  1086

seq1  ACAAACGAA-GGTGAGTGCCTTCCTTTGGCACACAGGCAG-CCTTCATTT  1147
      ||||||||| ||||| |||  ||  || ||||||| |||| ||||||  |
seq2  ACAAACGAAGGGTGA-TGC--TC--TTTGCACACAAGCAGCCCTTCA--T  1129

seq1  TCCCCTCTTACATATGAAATAAAGAATGAGTAAGGCAGAAAGCTTA----  1193
      | |||||||    ||| ||| ||||  || ||  || |||  ||||    
seq2  TGCCCTCTT---CATGGAAT-AAGATGGATTA--GCGGAAGCCTTAAGAG  1173

seq1  AGAGGAGGGTATAG  1207
      ||||||||||||||
seq2  AGAGGAGGGTATAG  1187