BAC Information

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BAC

Clone NameB6Ng01-313G05
Chromosome6 (Build37)
Map Location 33,283,408 - 33,410,397
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313G05.bB6Ng01-313G05.g
ACCGA104616GA104617
length1,1731,080
definitionB6Ng01-313G05.b B6Ng01-313G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,409,227 - 33,410,397)(33,283,408 - 33,284,498)
sequence
gaattcattcctttcttaagtgctagctccatctctgttcatgtgtccac
ggcacaatcttctgttctatcgagagaatggagagtcttgtgaatgatcc
ccatctgcagctcagcattccaaatcatgctctccttgactctctggcag
tctcagtttctcttaatgtcacaactaatataaagtcaccactcttcttc
catcccccatcctcctagaggatgctgcaaattacagcttctgtatattg
ttttcttcctaaagaataaaactgagctcgagtttccttcagaatccttt
taaaaattaatttattaaggatacttagaacccaaaacaggaacctcaac
tgtccctgataacaaaaccagttagagacaatgaacatcccttgtagtta
attcttaataacattcaaacctcttccactacttttatataatgtctgaa
aatcataggactgaccatttatcacagctacagattcttgccaacactgg
gaaaggaattacacaaggttatggatatgcctaccaactgtagagatacc
tatggcaaatatgcattagaggaataattcaaaattgtacatcactgaac
aagtaatggccaagagagatgaaaataaatgccattgacatcaacctcaa
agttactgagaaattaataagtgatacctatgaggaaagtgctctacttg
tccagtgctaggccaagcagagctatacaacatgaccctgactcaaataa
acatgcaaacagacaagcaagcaacaacaaacagggcttcctaagaacgc
tggataaaaccacttcgacacaatcaggacacacatctagttactatgga
aagatatactggaaatcagtgaattgatatgtagtctaaaaggtaaataa
atccaggaagttgtcagaatgagatggaaaagaataatacagaggtgctt
agattccttaaaaggaaatcctgtcagcaagggggacagatgcccagcac
aactaaaaacaccaggcactgaaaatatagaattggaatttccatacatg
tctgataaatgttgtatttatcagaacgtgttagtatttttttaaactta
aacacctaacctctagaatgcagcagtgctcacctgatgtacccaaagag
aaatgaaaccgaagatacgaagc

gaattcatggccagcctaggttacatagggagacgctgtctcgaagaaca
agtcacaggagaaaaaaagtaattttctcctttgttggagtggatgtgcg
tgggagatggtaatgcataaagggtgatagttttcttaatgtgctactat
ggagtttctactgtttttacttaacatgcatacgttttaaaaacagacat
tacacaaaattaaggaaaaagagtactaatgctgcctagatttttctcag
atttactttaatgttttttaaaatctgatatattctattcacattttctg
aattctttttatatatctagataacactaatattgatttaagaactcttc
aaaagtaattctctcatgaacttaatttaaaagtactataactggtaaag
gaaaagcaaagtaggaagagtctcaaaccattatctacttgcctgccatc
atggaatgcatcgaagcagatggctgaagagtgtgggttttgtagagatc
tgagtgttgcagctcctggtaccgtacagggatggatgtctgctttagat
gcggttagtggttataatgctttagtaagaacatagcacacatgcatgtg
catacgaacacatatgtttgttagtgatgcattctccagtcttcatgtat
tttatcactcatgtggttctgagaagctggggcctaagtcagaattgcac
ttcacgtttctgctttctttgcttggtgcctggatttctgcaaagacctt
ttgactctttgctaatgaatactcgaaaattctgctttgctatttgctct
gttgttccaagtgcccagatggatagactgaactttcatagggaaataac
attactataatatatactggaaataaagcaaagggcacagatcaataact
ttcctgcagctctcattatagttgccctaaaaacattgtgtctttcatag
gattttgacctcttctctgtattgcctcagctgtttcagaatcacgaatg
cagattacatcagtagagcagaagtagcttcttgcctagaaaaattctaa
atagctttctgaagagagtcagcagtagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33409227_33410397
seq2: B6Ng01-313G05.b_46_1218 (reverse)

seq1  GCTTCGTA-CTTCGTGTTCATTTCTC-TTGGGTACATTCAGGGGTAGCAC  48
      |||||||| |||||  |||||||||| ||||||||| ||||| | |||||
seq2  GCTTCGTATCTTCGGTTTCATTTCTCTTTGGGTACA-TCAGGTG-AGCAC  48

seq1  TGCTGCA-TCTAGA-GTTAGGTGTTTAGGTTT-AAAAAATACTAACACG-  94
      ||||||| |||||| |||||||||||| |||| |||||||||||||||| 
seq2  TGCTGCATTCTAGAGGTTAGGTGTTTAAGTTTAAAAAAATACTAACACGT  98

seq1  TCTGATAAATAC-ACATTTATCAGACATTGTATGGAAATTCCAATTCTAT  143
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TCTGATAAATACAACATTTATCAGACA-TGTATGGAAATTCCAATTCTAT  147

seq1  ATTTTCAGTGCCTGGTGTTTTTAGTTGTGCTGGGCATCTGTCCCCCTTGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTGCCTGGTGTTTTTAGTTGTGCTGGGCATCTGTCCCCCTTGC  197

seq1  TGACAGGATTTCCTTTTAAGGAATCTAAGCACCCTCTTGTATTATTCTTT  243
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TGACAGGATTTCCTTTTAAGGAATCTAAGCA-CCTC-TGTATTATTCTTT  245

seq1  TCCATCTCATTCTGACAACTTCCTGGATTTATTTACCTTTTAGACTACAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCATTCTGACAACTTCCTGGATTTATTTACCTTTTAGACTACAT  295

seq1  ATCAATTCACTGATTTCCAGTATATCTTTCCATAGTAACTAGATGTGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTCACTGATTTCCAGTATATCTTTCCATAGTAACTAGATGTGTGT  345

seq1  CCTGATTGTGTCGAAGTGGTTTTATCCAGCGTTCTTAGGAAGCCCTGTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGTGTCGAAGTGGTTTTATCCAGCGTTCTTAGGAAGCCCTGTTT  395

seq1  GTTGTTGCTTGCTTGTCTGTTTGCATGTTTATTTGAGTCAGGGTCATGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTTGCTTGTCTGTTTGCATGTTTATTTGAGTCAGGGTCATGTT  445

seq1  GTATAGCTCTGCTTGGCCTAGCACTGGACAAGTAGAGCACTTTCCTCATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTCTGCTTGGCCTAGCACTGGACAAGTAGAGCACTTTCCTCATA  495

seq1  GGTATCACTTATTAATTTCTCAGTAACTTTGAGGTTGATGTCAATGGCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACTTATTAATTTCTCAGTAACTTTGAGGTTGATGTCAATGGCAT  545

seq1  TTATTTTCATCTCTCTTGGCCATTACTTGTTCAGTGATGTACAATTTTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCATCTCTCTTGGCCATTACTTGTTCAGTGATGTACAATTTTGA  595

seq1  ATTATTCCTCTAATGCATATTTGCCATAGGTATCTCTACAGTTGGTAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCTCTAATGCATATTTGCCATAGGTATCTCTACAGTTGGTAGGC  645

seq1  ATATCCATAACCTTGTGTAATTCCTTTCCCAGTGTTGGCAAGAATCTGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATAACCTTGTGTAATTCCTTTCCCAGTGTTGGCAAGAATCTGTA  695

seq1  GCTGTGATAAATGGTCAGTCCTATGATTTTCAGACATTATATAAAAGTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAAATGGTCAGTCCTATGATTTTCAGACATTATATAAAAGTAG  745

seq1  TGGAAGAGGTTTGAATGTTATTAAGAATTAACTACAAGGGATGTTCATTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGGTTTGAATGTTATTAAGAATTAACTACAAGGGATGTTCATTG  795

seq1  TCTCTAACTGGTTTTGTTATCAGGGACAGTTGAGGTTCCTGTTTTGGGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACTGGTTTTGTTATCAGGGACAGTTGAGGTTCCTGTTTTGGGTT  845

seq1  CTAAGTATCCTTAATAAATTAATTTTTAAAAGGATTCTGAAGGAAACTCG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTATCCTTAATAAATTAATTTTTAAAAGGATTCTGAAGGAAACTCG  895

seq1  AGCTCAGTTTTATTCTTTAGGAAGAAAACAATATACAGAAGCTGTAATTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTTTATTCTTTAGGAAGAAAACAATATACAGAAGCTGTAATTT  945

seq1  GCAGCATCCTCTAGGAGGATGGGGGATGGAAGAAGAGTGGTGACTTTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCTCTAGGAGGATGGGGGATGGAAGAAGAGTGGTGACTTTATA  995

seq1  TTAGTTGTGACATTAAGAGAAACTGAGACTGCCAGAGAGTCAAGGAGAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTGACATTAAGAGAAACTGAGACTGCCAGAGAGTCAAGGAGAGC  1045

seq1  ATGATTTGGAATGCTGAGCTGCAGATGGGGATCATTCACAAGACTCTCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGAATGCTGAGCTGCAGATGGGGATCATTCACAAGACTCTCCA  1095

seq1  TTCTCTCGATAGAACAGAAGATTGTGCCGTGGACACATGAACAGAGATGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCGATAGAACAGAAGATTGTGCCGTGGACACATGAACAGAGATGG  1145

seq1  AGCTAGCACTTAAGAAAGGAATGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  AGCTAGCACTTAAGAAAGGAATGAATTC  1173


seq1: chr6_33283408_33284498
seq2: B6Ng01-313G05.g_66_1145

seq1  GAATTCATGGCCAGCCTAGGTTACATAGGGAGACGCTGTCTCGAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCAGCCTAGGTTACATAGGGAGACGCTGTCTCGAAGAACA  50

seq1  AGTCACAGGAGAAAAAAAGTAATTTTCTCCTTTGTTGGAGTGGATGTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGAGAAAAAAAGTAATTTTCTCCTTTGTTGGAGTGGATGTGCG  100

seq1  TGGGAGATGGTAATGCATAAAGGGTGATAGTTTTCTTAATGTGCTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGTAATGCATAAAGGGTGATAGTTTTCTTAATGTGCTACTAT  150

seq1  GGAGTTTCTACTGTTTTTACTTAACATGCATACGTTTTAAAAACAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTACTGTTTTTACTTAACATGCATACGTTTTAAAAACAGACAT  200

seq1  TACACAAAATTAAGGAAAAAGAGTACTAATGCTGCCTAGATTTTTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAATTAAGGAAAAAGAGTACTAATGCTGCCTAGATTTTTCTCAG  250

seq1  ATTTACTTTAATGTTTTTTAAAATCTGATATATTCTATTCACATTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTAATGTTTTTTAAAATCTGATATATTCTATTCACATTTTCTG  300

seq1  AATTCTTTTTATATATCTAGATAACACTAATATTGATTTAAGAACTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTTATATATCTAGATAACACTAATATTGATTTAAGAACTCTTC  350

seq1  AAAAGTAATTCTCTCATGAACTTAATTTAAAAGTACTATAACTGGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTCTCTCATGAACTTAATTTAAAAGTACTATAACTGGTAAAG  400

seq1  GAAAAGCAAAGTAGGAAGAGTCTCAAACCATTATCTACTTGCCTGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAAGTAGGAAGAGTCTCAAACCATTATCTACTTGCCTGCCATC  450

seq1  ATGGAATGCATCGAAGCAGATGGCTGAAGAGTGTGGGTTTTGTAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGCATCGAAGCAGATGGCTGAAGAGTGTGGGTTTTGTAGAGATC  500

seq1  TGAGTGTTGCAGCTCCTGGTACCGTACAGGGATGGATGTCTGCTTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTGCAGCTCCTGGTACCGTACAGGGATGGATGTCTGCTTTAGAT  550

seq1  GCGGTTAGTGGTTATAATGCTTTAGTAAGAACATAGCACACATGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTAGTGGTTATAATGCTTTAGTAAGAACATAGCACACATGCATGTG  600

seq1  CATACGAACACATATGTTTGTTAGTGATGCATTCTCCAGTCTTCATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGAACACATATGTTTGTTAGTGATGCATTCTCCAGTCTTCATGTAT  650

seq1  TTTATCACTCATGTGGTTCTGAGAAGCTGGGGCCTAAGTCAGAATTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACTCATGTGGTTCTGAGAAGCTGGGGCCTAAGTCAGAATTGCAC  700

seq1  TTCACGTTTCTGCTTTCTTTGCTTGGTGCCTGGATTTCTGCAAAGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTTCTGCTTTCTTTGCTTGGTGCCTGGATTTCTGCAAAGACCTT  750

seq1  TTGACTCTTTGCTAATGAATACTCGAAAATTCTGCTTTGCTATTTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTTTGCTAATGAATACTCGAAAATTCTGCTTTGCTATTTGCTCT  800

seq1  GTTGTTCCAAGTGCCCAGATGGATAGACTGAACTTTCATAGGGAAATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCAAGTGCCCAGATGGATAGACTGAACTTTCATAGGGAAATAAC  850

seq1  ATTACTATAATATATACTGGAAATAAAGCAAAGGGCACAGATCAATAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATAATATATACTGGAAATAAAGCAAAGGGCACAGATCAATAACT  900

seq1  TTCCTGCAGCTCTCATTATAGTTGCCCTAAAAACATTGTGTCTTTCATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAGCTCTCATTATAGTTGCCCTAAAAACATTGTGTCTTTCATAG  950

seq1  GATTTTGACCTCTTCCTCTTGTATTGCCTCAGCTGTTTCCAGAATTCACG  1000
      |||||||||||||| ||| ||||||||||||||||||| ||||| |||||
seq2  GATTTTGACCTCTT-CTC-TGTATTGCCTCAGCTGTTT-CAGAA-TCACG  996

seq1  AATGCAGATTACATCAGTAGAAGCAGAAAGCCAGCTCCTTGCCTTAGAAA  1050
      |||||||||||||||||||| |||||||    |||| |||||||   |||
seq2  AATGCAGATTACATCAGTAG-AGCAGAA--GTAGCTTCTTGCCTAGAAAA  1043

seq1  ATTCTAAATAGCTTTCTGGAAGGAAGGAGTCAGCAGTAGAG  1091
      ||||||||||||||||| ||||    |||||||||||||||
seq2  ATTCTAAATAGCTTTCT-GAAG---AGAGTCAGCAGTAGAG  1080


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