BAC Information

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BAC

Clone NameB6Ng01-313G11
Chromosome6 (Build37)
Map Location 20,300,189 - 20,464,226
singlet/doubletdoublet
Overlap geneLOC100040838
Upstream genenone
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313G11.bB6Ng01-313G11.g
ACCGA104628GA104629
length9771,100
definitionB6Ng01-313G11.b B6Ng01-313G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,300,189 - 20,301,066)(20,463,120 - 20,464,226)
sequence
gaattctttccccttttgcataatgttatagtccacaaaactgactggca
tcctagacagccacacttttcactgaacatcaaggttggttagttttgtt
cattacccgttttttgcttgcttgcttgcttgcttgtttttttgtggaga
ttgattataattatcatcactcaaaaagcattgaatttgagttattctac
tcatcataacttttgctagtattttatttgaaaagatttataaagaatgg
ctaaattcatagaataaatgtaagagtttattccctgaattacttcattt
caaatgttaatcaatagacctttattcatgtttgcattttggcaaagggt
agaggtgggatttgatggtgcaaacagaagaagtaaagccctgagagtca
ataggaagaatggaaacggacaaattcgcgaggtaggaggttgggggatc
ctctagaaggtaccagagacctaggaggtaagagaccctcaagacaaaga
gagggaccttagataaaatgaccaacactggggagaaggaacttgtagag
tcctcctcgagcagaaaatcagtcaaaaactctgacccagaattgctcct
gtctaaaagaattgcaggaactaaaactgagaagagacagggggaggggg
gcccagtgtcagacccaaattgatttctacttcaaggggtggctccaagg
cctgacaccattactgatgctatcatggacttacagacagaggcctagca
tggctgtcctcccagaggaccaaaaaatgagtcagatgcatatactcaca
ctcatcaaatggacagaagctagaggtccctgttgttgaattatggaaat
gttggaagaagctgagaaggagggcaaccctctataagaaggccagcagt
cttaactatcctggacccctgagatgttgcatacattgaatcactgacca
gacaacatgtactagctgctagaggtc

gaattcttattcagagttaaaggagaaataaattgaggcacaaataattt
aacatcttaaaaaactgctaatagttagatttatgctatcaataactctg
gaaaatatagccgagcaatatagtaatagctattttaataaaaagtaatt
ctaagaaaatagtttttaaaaaattgacaatatcaggtattgcatgtcat
ataagaattataatttctataaatacattttattagctgaagattaaatc
aaaattttaatgtacacatgtttattttattggaatttttgaatcatttt
tgtacacattttcatgaggatatctctttgtatagcactttgaatagttc
cacaatacacttttcaacttataaactaaggagtctttctgcaaacagca
gaaaaacaaatagaaaacatgtgtaagtagctacatagaaaaatttaatt
tgaccaattacttaatgtagccatacatgtacactaatcttctacatttt
tatcaatctcatcttaaacatatttagtacaaataatactggagacttta
aagtatttattagttctgtgaaaatttcaaataacttttttctaacattt
acccacaacactgcccttgaattcctcccaaatctaactgcacttcctta
aatcatgtgtgatgcacctggaaccacacccttaaatggaattgagtctt
tctccccagaagcatccaagtgtccatagattctcttttagggagaggga
ctcaagaatccttttccctccatgctataccattggctgattcgaccttc
tgcatatcctgtacaaacagccagggtgtaaggtagttcatgggttcact
cctatcctactgtaagacaccattccacttctgtcctccttgacctctgg
gttcttactgtttctcagtttcctcttccacaacagtcactgagccttga
ggtgagaggagtataaatctgacttgtttgtggaaaacacatttactgac
aagttactctatgcactttgacttactgtcagacatcatcaactaaacaa
gaactttctatactgtctatagctgtagaatgagggacgccaggccaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20300189_20301066
seq2: B6Ng01-313G11.b_44_921

seq1  GAATTCTTTCCCCTTTTGCATAATGTTATAGTCCACAAAACTGACTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCTTTTGCATAATGTTATAGTCCACAAAACTGACTGGCA  50

seq1  TCCTAGACAGCCACACTTTTCACTGAACATCAAGGTTGGTTAGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACAGCCACACTTTTCACTGAACATCAAGGTTGGTTAGTTTTGTT  100

seq1  CATTACCCGTTTTTTGCTTGCTTGCTTGCTTGCTTGTTTTTTTGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCGTTTTTTGCTTGCTTGCTTGCTTGCTTGTTTTTTTGTGGAGA  150

seq1  TTGATTATAATTATCATCACTCAAAAAGCATTGAATTTGAGTTATTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATAATTATCATCACTCAAAAAGCATTGAATTTGAGTTATTCTAC  200

seq1  TCATCATAACTTTTGCTAGTATTTTATTTGAAAAGATTTATAAAGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAACTTTTGCTAGTATTTTATTTGAAAAGATTTATAAAGAATGG  250

seq1  CTAAATTCATAGAATAAATGTAAGAGTTTATTCCCTGAATTACTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCATAGAATAAATGTAAGAGTTTATTCCCTGAATTACTTCATTT  300

seq1  CAAATGTTAATCAATAGACCTTTATTCATGTTTGCATTTTGGCAAAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTAATCAATAGACCTTTATTCATGTTTGCATTTTGGCAAAGGGT  350

seq1  AGAGGTGGGATTTGATGGTGCAAACAGAAGAAGTAAAGCCCTGAGAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGATTTGATGGTGCAAACAGAAGAAGTAAAGCCCTGAGAGTCA  400

seq1  ATAGGAAGAATGGAAACGGACAAATTCGCGAGGTAGGAGGTTGGGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAATGGAAACGGACAAATTCGCGAGGTAGGAGGTTGGGGGATC  450

seq1  CTCTAGAAGGTACCAGAGACCTAGGAGGTAAGAGACCCTCAAGACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAGGTACCAGAGACCTAGGAGGTAAGAGACCCTCAAGACAAAGA  500

seq1  GAGGGACCTTAGATAAAATGACCAACACTGGGGAGAAGGAACTTGTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCTTAGATAAAATGACCAACACTGGGGAGAAGGAACTTGTAGAG  550

seq1  TCCTCCTCGAGCAGAAAATCAGTCAAAAACTCTGACCCAGAATTGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCGAGCAGAAAATCAGTCAAAAACTCTGACCCAGAATTGCTCCT  600

seq1  GTCTAAAAGAATTGCAGGAACTAAAACTGAGAAGAGACAGGGGGAGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAGAATTGCAGGAACTAAAACTGAGAAGAGACAGGGGGAGGGGG  650

seq1  GCCCAGTGTCAGACCCAAATTGATTTCTACTTCAAGGGGTGGCTCCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTCAGACCCAAATTGATTTCTACTTCAAGGGGTGGCTCCAAGG  700

seq1  CCTGACACCATTACTGATGCTATCATGGACTTACAGACAGAGGCCTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCATTACTGATGCTATCATGGACTTACAGACAGAGGCCTAGCA  750

seq1  TGGCTGTCCTCCCAGAGGACCAAAAAATGAGTCAGATGCATATACTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTCCCAGAGGACCAAAAAATGAGTCAGATGCATATACTCACA  800

seq1  CTCATCAAATGGACAGAAGCTAGAGGTCCCTGTTGTTGAATTATGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAATGGACAGAAGCTAGAGGTCCCTGTTGTTGAATTATGGAAAT  850

seq1  GTTGGAAGAAGCTGAGAAGGAGGGCAAC  878
      ||||||||||||||||||||||||||||
seq2  GTTGGAAGAAGCTGAGAAGGAGGGCAAC  878


seq1: chr6_20463120_20464226
seq2: B6Ng01-313G11.g_67_1166 (reverse)

seq1  CTTTGGCCCTGGCGTTCCCCTCATTTCTACAGCTATTAGACAGTATTAGA  50
      |||||| ||||||||  |||||| ||||||||||| ||||||||| ||| 
seq2  CTTTGG-CCTGGCGT--CCCTCA-TTCTACAGCTA-TAGACAGTA-TAG-  43

seq1  AAAGTTTCTTTGTTTAGTTGATGATGTCTTGACAGTAAGTCAAAGTGCAT  100
      ||||||   ||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGTT--CTTGTTTAGTTGATGATGTC-TGACAGTAAGTCAAAGTGCAT  90

seq1  AGAGTAAC-TGTCAGTAAATGTG-TATCCACAAACAAGTCAGATTTTATA  148
      |||||||| |||||||||||||| | ||||||||||||||||| ||||||
seq2  AGAGTAACTTGTCAGTAAATGTGTTTTCCACAAACAAGTCAGA-TTTATA  139

seq1  CT-CTCTCACCTCAAGGCTCAGTGACTGTTGTGGAAGAGGAAACTGAGAA  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCACCTCAAGGCTCAGTGACTGTTGTGGAAGAGGAAACTGAGAA  189

seq1  ACAGTAAGAA-CCAGAGGTCAAGGAGGACAGAAGTGGAATGGTGTCTTAC  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGAACCCAGAGGTCAAGGAGGACAGAAGTGGAATGGTGTCTTAC  239

seq1  AGTAGGATAGGAGTGAACCCATGAACTACCTTACACCCTGGCTGTTTGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATAGGAGTGAACCCATGAACTACCTTACACCCTGGCTGTTTGTA  289

seq1  CAGGATATGCAGAAGGTCGAATCAGCCAATGGTATAGCATGGAGGGAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGCAGAAGGTCGAATCAGCCAATGGTATAGCATGGAGGGAAAA  339

seq1  GGATTCTTGAGTCCCTCTCCCTAAAAGAGAATCTATGGACACTTGGATGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTGAGTCCCTCTCCCTAAAAGAGAATCTATGGACACTTGGATGC  389

seq1  TTCTGGGGAGAAAGACTCAATTCCATTTAAGGGTGTGGTTCCAGGTGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGAGAAAGACTCAATTCCATTTAAGGGTGTGGTTCCAGGTGCAT  439

seq1  CACACATGATTTAAGGAAGTGCAGTTAGATTTGGGAGGAATTCAAGGGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGATTTAAGGAAGTGCAGTTAGATTTGGGAGGAATTCAAGGGCA  489

seq1  GTGTTGTGGGTAAATGTTAGAAAAAAGTTATTTGAAATTTTCACAGAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGGTAAATGTTAGAAAAAAGTTATTTGAAATTTTCACAGAACT  539

seq1  AATAAATACTTTAAAGTCTCCAGTATTATTTGTACTAAATATGTTTAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACTTTAAAGTCTCCAGTATTATTTGTACTAAATATGTTTAAGA  589

seq1  TGAGATTGATAAAAATGTAGAAGATTAGTGTACATGTATGGCTACATTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGATAAAAATGTAGAAGATTAGTGTACATGTATGGCTACATTAA  639

seq1  GTAATTGGTCAAATTAAATTTTTCTATGTAGCTACTTACACATGTTTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGTCAAATTAAATTTTTCTATGTAGCTACTTACACATGTTTTCT  689

seq1  ATTTGTTTTTCTGCTGTTTGCAGAAAGACTCCTTAGTTTATAAGTTGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTCTGCTGTTTGCAGAAAGACTCCTTAGTTTATAAGTTGAAA  739

seq1  AGTGTATTGTGGAACTATTCAAAGTGCTATACAAAGAGATATCCTCATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTGTGGAACTATTCAAAGTGCTATACAAAGAGATATCCTCATGA  789

seq1  AAATGTGTACAAAAATGATTCAAAAATTCCAATAAAATAAACATGTGTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTACAAAAATGATTCAAAAATTCCAATAAAATAAACATGTGTAC  839

seq1  ATTAAAATTTTGATTTAATCTTCAGCTAATAAAATGTATTTATAGAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTTTGATTTAATCTTCAGCTAATAAAATGTATTTATAGAAATT  889

seq1  ATAATTCTTATATGACATGCAATACCTGATATTGTCAATTTTTTAAAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTATATGACATGCAATACCTGATATTGTCAATTTTTTAAAAAC  939

seq1  TATTTTCTTAGAATTACTTTTTATTAAAATAGCTATTACTATATTGCTCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTAGAATTACTTTTTATTAAAATAGCTATTACTATATTGCTCG  989

seq1  GCTATATTTTCCAGAGTTATTGATAGCATAAATCTAACTATTAGCAGTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATTTTCCAGAGTTATTGATAGCATAAATCTAACTATTAGCAGTTT  1039

seq1  TTTAAGATGTTAAATTATTTGTGCCTCAATTTATTTCTCCTTTAACTCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGTTAAATTATTTGTGCCTCAATTTATTTCTCCTTTAACTCTG  1089

seq1  AATAAGAATTC  1107
      |||||||||||
seq2  AATAAGAATTC  1100


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