BAC Information

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BAC

Clone NameB6Ng01-314A05
Chromosome6 (Build37)
Map Location 104,149,535 - 104,295,917
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314A05.bB6Ng01-314A05.g
ACCGA105069GA105070
length1,0801,028
definitionB6Ng01-314A05.b B6Ng01-314A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,294,836 - 104,295,917)(104,149,535 - 104,150,562)
sequence
gaattctgagagtacttttagttattaaaaatattcctgaaaaaatgttg
acattttcataaaaattattgttactgagggtgagaactagaaagagata
gatacagagaaagagagagagagagagagagagagagagagagagagaga
gagagagagacagagacagagacagagacagagagagacagagggacaga
gagagagacagggacagagacagagacagagacagatagagaaaaggaga
ttaagatggtgccatactggtaccagaaccattctgtcagaagaaaaaag
gagtaagtataagatttttatctcctctttagaacttaccatatttaatt
tttaaatggcttctagtatcagaaaagcatgagaaatcaaattagatttt
aatactcttgagtactcattctccaattattttcccgccttttgagattt
ttctaagtagaagattaacagttttctcagtgttgggagcactacagtgc
gtttaggggatgacgctgacacactttactgaggctgtgctgaatgttca
gaggtcaagttaaagaggaagaaaatagactctcagctctaatctagtcc
catgggaccttcccaaattttgcataatgccttaccttatcttaagaaaa
aaatctatgcaatgagttaagcaaggatttactcttctttttttttttaa
tcatgtaaatctcatttttaaaagagcttaatatttcattaggaaagaca
aaaaaaaagtaataataagccccaggaaattaagcacaaaggctttaact
ggtctctgtgagaatagcctgcagccaagcttacgactcttcatctgcta
atcttaatattagctgacgttaattttgaagtagttattgctaatatgaa
ttatgtataaagattaactatatttatctgcattctttacatgttagggg
acgtggcttccctttgattacacacgtaagtaccccctccacattgggct
tgcatgcttctttcacaagaagtcagcagaaaagccatttgctcaggaca
ctggaataagtactcaagtctggcccatcc
gaattcaagtggagtggcaggacccatgcttgagtttttatgcttttgct
ccaatcaaagatacacgcatttcaccatttgcacttgggacatgaatatt
gtctgtttagattacatctttcaaaaatcttcaagattttctgaacatac
tttgatagatgtttttactttttacgtattttggttcatttttaaaaagt
cataataattgtaacttctattttaagtcatcttaatgtgaagctcatcc
ccaacacttaaatcctaatactctattttctctcaatgtagggagaactc
agtgctaaaatactggtaatttgattagtttgtcacaaaatagaacagaa
caatatgtgttaaaaaacactttaaagtctcatggaataagaacaaagaa
atcaatacgcatatgcagaggaaatcttattggggtttagttagccctta
aatgccattttaacaaataagaccaccagtcacaggatcaaaattggtgt
ttgcttgttccttcttgaaataacaatgcacacacttttattagtgtgaa
catctcacctatgacttaagtgaaaatgaactttcctttaattgcgcgaa
tacttagagatggtagataaaaatcatattcatttttcctatttactgga
agatatttaacaccagaaaagattaggaaaagaaacacttcccatatgta
tgcatacatttcatgtgaaaaaaataattagttctgccaaagtgttattt
gtagctattgccaaatttaattttatgatgttttaaaaagttttagcaga
cctatctaagatagcagctgtgggtcctgaaataaattaatttgaaaaag
gtttaaaataacactacagatttgaagatgaacaaaacttgagttgaata
attccaggctcacatttcttatcacttcataagagaaaactagatgaagt
gtctcctacttatgtgactcttcccagagaggttcagtacttcctgtgac
aggtgtttaagcagttttccataattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104294836_104295917
seq2: B6Ng01-314A05.b_44_1123 (reverse)

seq1  GGATGGGCAAGACCTGAGTACTTATTTCAGTGTTCTTGAGCAAAT-GCTT  49
      |||||||| |||| |||||||||||| ||||| || ||||||||| ||||
seq2  GGATGGGCCAGACTTGAGTACTTATTCCAGTG-TCCTGAGCAAATGGCTT  49

seq1  TTCTGCTGAC-TCTTGTGAAGGAAAGCATGCAAG-CCAATGTGGA-GGGG  96
      |||||||||| ||||||||| | ||||||||||| |||||||||| ||||
seq2  TTCTGCTGACTTCTTGTGAAAG-AAGCATGCAAGCCCAATGTGGAGGGGG  98

seq1  TACTTACGTGTGTAAATCAAAGGG-AGCCACCGTCCCCTAACATTGTAAA  145
      ||||||||||||| |||||||||| ||||| |||||||||||| ||||||
seq2  TACTTACGTGTGT-AATCAAAGGGAAGCCA-CGTCCCCTAACA-TGTAAA  145

seq1  GAATGCAGATAAATATAGTTTAATCTTTTATACATAATTCATATTAGCAA  195
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GAATGCAGATAAATATAG-TTAATC-TTTATACATAATTCATATTAGCAA  193

seq1  TAACTACTTCAAAATTAACGTCAGCTAATATTAAGATTAGCAGATGAAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTTCAAAATTAACGTCAGCTAATATTAAGATTAGCAGATGAAGA  243

seq1  GTCGTAAGCTTGGCTGCAGGCTATTCTCACAGAGACCAGTTAAAGCCTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAAGCTTGGCTGCAGGCTATTCTCACAGAGACCAGTTAAAGCCTTT  293

seq1  GTGCTTAATTTCCTGGGGCTTATTATTACTTTTTTTTTGTCTTTCCTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAATTTCCTGGGGCTTATTATTACTTTTTTTTTGTCTTTCCTAAT  343

seq1  GAAATATTAAGCTCTTTTAAAAATGAGATTTACATGATTAAAAAAAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAAGCTCTTTTAAAAATGAGATTTACATGATTAAAAAAAAAAA  393

seq1  GAAGAGTAAATCCTTGCTTAACTCATTGCATAGATTTTTTTCTTAAGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAAATCCTTGCTTAACTCATTGCATAGATTTTTTTCTTAAGATA  443

seq1  AGGTAAGGCATTATGCAAAATTTGGGAAGGTCCCATGGGACTAGATTAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGCATTATGCAAAATTTGGGAAGGTCCCATGGGACTAGATTAGA  493

seq1  GCTGAGAGTCTATTTTCTTCCTCTTTAACTTGACCTCTGAACATTCAGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTCTATTTTCTTCCTCTTTAACTTGACCTCTGAACATTCAGCA  543

seq1  CAGCCTCAGTAAAGTGTGTCAGCGTCATCCCCTAAACGCACTGTAGTGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGTAAAGTGTGTCAGCGTCATCCCCTAAACGCACTGTAGTGCT  593

seq1  CCCAACACTGAGAAAACTGTTAATCTTCTACTTAGAAAAATCTCAAAAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACTGAGAAAACTGTTAATCTTCTACTTAGAAAAATCTCAAAAGG  643

seq1  CGGGAAAATAATTGGAGAATGAGTACTCAAGAGTATTAAAATCTAATTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAATAATTGGAGAATGAGTACTCAAGAGTATTAAAATCTAATTTG  693

seq1  ATTTCTCATGCTTTTCTGATACTAGAAGCCATTTAAAAATTAAATATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATGCTTTTCTGATACTAGAAGCCATTTAAAAATTAAATATGGT  743

seq1  AAGTTCTAAAGAGGAGATAAAAATCTTATACTTACTCCTTTTTTCTTCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAAAGAGGAGATAAAAATCTTATACTTACTCCTTTTTTCTTCTG  793

seq1  ACAGAATGGTTCTGGTACCAGTATGGCACCATCTTAATCTCCTTTTCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGTTCTGGTACCAGTATGGCACCATCTTAATCTCCTTTTCTCT  843

seq1  ATCTGTCTCTGTCTCTGTCTCTGTCCCTGTCTCTCTCTCTGTCCCTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCTGTCTCTGTCTCTGTCCCTGTCTCTCTCTCTGTCCCTCTGT  893

seq1  CTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCT  943

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTATCTATCTCTTTCTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTATCTATCTCTTTCTAG  993

seq1  TTCTCACCCTCAGTAACAATAATTTTTATGAAAATGTCAACATTTTTTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCTCAGTAACAATAATTTTTATGAAAATGTCAACATTTTTTCA  1043

seq1  GGAATATTTTTAATAACTAAAAGTACTCTCAGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTTTAATAACTAAAAGTACTCTCAGAATTC  1080

seq1: chr6_104149535_104150562
seq2: B6Ng01-314A05.g_65_1092

seq1  GAATTCAAGTGGAGTGGCAGGACCCATGCTTGAGTTTTTATGCTTTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGGAGTGGCAGGACCCATGCTTGAGTTTTTATGCTTTTGCT  50

seq1  CCAATCAAAGATACACGCATTTCACCATTTGCACTTGGGACATGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAAGATACACGCATTTCACCATTTGCACTTGGGACATGAATATT  100

seq1  GTCTGTTTAGATTACATCTTTCAAAAATCTTCAAGATTTTCTGAACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTAGATTACATCTTTCAAAAATCTTCAAGATTTTCTGAACATAC  150

seq1  TTTGATAGATGTTTTTACTTTTTACGTATTTTGGTTCATTTTTAAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGATGTTTTTACTTTTTACGTATTTTGGTTCATTTTTAAAAAGT  200

seq1  CATAATAATTGTAACTTCTATTTTAAGTCATCTTAATGTGAAGCTCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAATTGTAACTTCTATTTTAAGTCATCTTAATGTGAAGCTCATCC  250

seq1  CCAACACTTAAATCCTAATACTCTATTTTCTCTCAATGTAGGGAGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTAAATCCTAATACTCTATTTTCTCTCAATGTAGGGAGAACTC  300

seq1  AGTGCTAAAATACTGGTAATTTGATTAGTTTGTCACAAAATAGAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAAATACTGGTAATTTGATTAGTTTGTCACAAAATAGAACAGAA  350

seq1  CAATATGTGTTAAAAAACACTTTAAAGTCTCATGGAATAAGAACAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTGTTAAAAAACACTTTAAAGTCTCATGGAATAAGAACAAAGAA  400

seq1  ATCAATACGCATATGCAGAGGAAATCTTATTGGGGTTTAGTTAGCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACGCATATGCAGAGGAAATCTTATTGGGGTTTAGTTAGCCCTTA  450

seq1  AATGCCATTTTAACAAATAAGACCACCAGTCACAGGATCAAAATTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTTTAACAAATAAGACCACCAGTCACAGGATCAAAATTGGTGT  500

seq1  TTGCTTGTTCCTTCTTGAAATAACAATGCACACACTTTTATTAGTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTCCTTCTTGAAATAACAATGCACACACTTTTATTAGTGTGAA  550

seq1  CATCTCACCTATGACTTAAGTGAAAATGAACTTTCCTTTAATTGCGCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCTATGACTTAAGTGAAAATGAACTTTCCTTTAATTGCGCGAA  600

seq1  TACTTAGAGATGGTAGATAAAAATCATATTCATTTTTCCTATTTACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAGATGGTAGATAAAAATCATATTCATTTTTCCTATTTACTGGA  650

seq1  AGATATTTAACACCAGAAAAGATTAGGAAAAGAAACACTTCCCATATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTAACACCAGAAAAGATTAGGAAAAGAAACACTTCCCATATGTA  700

seq1  TGCATACATTTCATGTGAAAAAAATAATTAGTTCTGCCAAAGTGTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATTTCATGTGAAAAAAATAATTAGTTCTGCCAAAGTGTTATTT  750

seq1  GTAGCTATTGCCAAATTTAATTTTATGATGTTTTAAAAAGTTTTAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATTGCCAAATTTAATTTTATGATGTTTTAAAAAGTTTTAGCAGA  800

seq1  CCTATCTAAGATAGCAGCTGTGGGTCCTGAAATAAATTAATTTGAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTAAGATAGCAGCTGTGGGTCCTGAAATAAATTAATTTGAAAAAG  850

seq1  GTTTAAAATAACACTACAGATTTGAAGATGAACAAAACTTGAGTTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATAACACTACAGATTTGAAGATGAACAAAACTTGAGTTGAATA  900

seq1  ATTCCAGGCTCACATTTCTTATCACTTCATAAGAGAAAACTAGATGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCTCACATTTCTTATCACTTCATAAGAGAAAACTAGATGAAGT  950

seq1  GTCTCCTACTTATGTGACTCTTCCCAGAGAGGTTCAGTACTTCCTGTGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTACTTATGTGACTCTTCCCAGAGAGGTTCAGTACTTCCTGTGAC  1000

seq1  AGGTGTTTAAGCAGTTTTCCATAATTGT  1028
      ||||||||||||||||||||||||||||
seq2  AGGTGTTTAAGCAGTTTTCCATAATTGT  1028