BAC Information

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BAC

Clone NameB6Ng01-315F13
Chromosome6 (Build37)
Map Location 54,371,856 - 54,495,099
singlet/doubletdoublet
Overlap geneWipf3, Scrn1
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315F13.bB6Ng01-315F13.g
ACCGA106022GA106023
length4461,120
definitionB6Ng01-315F13.b B6Ng01-315F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,494,648 - 54,495,099)(54,371,856 - 54,372,987)
sequence
tgctggcccatcaagaatcatctcaggaaacagacatggttctgttcact
ggctaacccacaaaatgttatcactcatggatgctggaggcggggttgat
aatatctaacagttagtctctgggacgctcctaacctcttctccacgctc
cgcacctatgctgtgagctgccactgcatgcatgtatatttggcaggtaa
aacaatactccagatgaaaccacggtctctatttcatttgtctctcttgt
ctgcccataccactgcatacacacagttcacactggaagccaggacagag
cctggccctctccacctcccagcatcccagggtgcacagagacagctgtc
acagcatctcctccccacccttcccatctcatccctgcagacctcatctg
ccttcctttattctcttcgtactggctggtgcccatttctctctgc
gaattccttcctggtccttagaaacccagtttaactgggggtgagagtgg
ggaaagcccagttgcactaataagataagtgtagagggaaaggatctgtc
agtctgaatgaggggaggagacagctgaggcaacatcttgcctaagacag
ttagttttctgaaattcaccattcaaggttgtcactgggaaccaagcttc
ttcacagaagtctgtttcttggctgacaaaagacaagagctcctgggtct
gtccttccgcacatgtccaggaaccatgggctttccttttgtgccagccg
tctcctgaagagcggtagattgaagaatcctcgaaaggtttcctctcctt
tcaagcaattgaggagacactgggtctcataagtgtgcaaaattgaacaa
cctaagagccattctcccctgctttacaagctaggctggggtcctgtgct
ggcctcagtcaggagaaagaacagagggggttccttctgctattataatt
gagccccacaacctttctggttttgacagtttgcatcttgacatctagag
gtgttttctcattgaaagggtcaaagctggggccccagcagccctaacaa
gttaggcccaaccacccatccttaataagccaattaaacagatgcataat
agtgaaaagcagagaaaggccatttagtcaatgtgagcacattggggaaa
ggaaaaaaaagggtccagggaccctgccccccatgtccatcttctggact
catgacacaagattttggctgtccttcaaggtgatctgatagcttttcag
aactgtgtgacatctctccaggagacgagttcttcctctggctggcacag
gcttcagcctttcccttctcctagcatcagtccccttgggagattccaat
tccttgggtaccattgatttaatagtctgataggcaaagggaggggcaca
ggcatccctttcagagcatcctcatttcctgcaggagggctaccatgcta
cacatttatttcacaaacacaggacttttagttataagtgagtgctagcc
ccagtcttaccaatatcacttgaattttacataagtgtctcacagcagtc
acttccaggatgaactgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54494648_54495099
seq2: B6Ng01-315F13.b_44_495 (reverse)

seq1  GCAGAGAGAAATGGGCACCAGCCAGTACGAAGAGAATAAAGGAAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAAATGGGCACCAGCCAGTACGAAGAGAATAAAGGAAGGCAGA  50

seq1  TGAGGTCTGCAGGGATGAGATGGGAAGGGTGGGGAGGAGATGCTGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGCAGGGATGAGATGGGAAGGGTGGGGAGGAGATGCTGTGACA  100

seq1  GCTGTCTCTGTGCACCCTGGGATGCTGGGAGGTGGAGAGGGCCAGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCTGTGCACCCTGGGATGCTGGGAGGTGGAGAGGGCCAGGCTCT  150

seq1  GTCCTGGCTTCCAGTGTGAACTGTGTGTATGCAGTGGTATGGGCAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCTTCCAGTGTGAACTGTGTGTATGCAGTGGTATGGGCAGACAA  200

seq1  GAGAGACAAATGAAATAGAGACCGTGGTTTCATCTGGAGTATTGTTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAAATGAAATAGAGACCGTGGTTTCATCTGGAGTATTGTTTTAC  250

seq1  CTGCCAAATATACATGCATGCAGTGGCAGCTCACAGCATAGGTGCGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAATATACATGCATGCAGTGGCAGCTCACAGCATAGGTGCGGAGC  300

seq1  GTGGAGAAGAGGTTAGGAGCGTCCCAGAGACTAACTGTTAGATATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGAGGTTAGGAGCGTCCCAGAGACTAACTGTTAGATATTATCA  350

seq1  ACCCCGCCTCCAGCATCCATGAGTGATAACATTTTGTGGGTTAGCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGCCTCCAGCATCCATGAGTGATAACATTTTGTGGGTTAGCCAGTG  400

seq1  AACAGAACCATGTCTGTTTCCTGAGATGATTCTTGATGGGCCAGCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACCATGTCTGTTTCCTGAGATGATTCTTGATGGGCCAGCAGAAT  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr6_54371856_54372987
seq2: B6Ng01-315F13.g_69_1188

seq1  GAATTCCTTCCTGGTCCTTAGAAACCCAGTTTAACTGGGGGTGAGAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGGTCCTTAGAAACCCAGTTTAACTGGGGGTGAGAGTGG  50

seq1  GGAAAGCCCAGTTGCACTAATAAGATAAGTGTAGAGGGAAAGGATCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCAGTTGCACTAATAAGATAAGTGTAGAGGGAAAGGATCTGTC  100

seq1  AGTCTGAATGAGGGGAGGAGACAGCTGAGGCAACATCTTGCCTAAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAATGAGGGGAGGAGACAGCTGAGGCAACATCTTGCCTAAGACAG  150

seq1  TTAGTTTTCTGAAATTCACCATTCAAGGTTGTCACTGGGAACCAAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCTGAAATTCACCATTCAAGGTTGTCACTGGGAACCAAGCTTC  200

seq1  TTCACAGAAGTCTGTTTCTTGGCTGACAAAAGACAAGAGCTCCTGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAAGTCTGTTTCTTGGCTGACAAAAGACAAGAGCTCCTGGGTCT  250

seq1  GTCCTTCCGCACATGTCCAGGAACCATGGGCTTTCCTTTTGTGCCAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCGCACATGTCCAGGAACCATGGGCTTTCCTTTTGTGCCAGCCG  300

seq1  TCTCCTGAAGAGCGGTAGATTGAAGAATCCTCGAAAGGTTTCCTCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAAGAGCGGTAGATTGAAGAATCCTCGAAAGGTTTCCTCTCCTT  350

seq1  TCAAGCAATTGAGGAGACACTGGGTCTCATAAGTGTGCAAAATTGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAATTGAGGAGACACTGGGTCTCATAAGTGTGCAAAATTGAACAA  400

seq1  CCTAAGAGCCATTCTCCCCTGCTTTACAAGCTAGGCTGGGGTCCTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGCCATTCTCCCCTGCTTTACAAGCTAGGCTGGGGTCCTGTGCT  450

seq1  GGCCTCAGTCAGGAGAAAGAACAGAGGGGGTTCCTTCTGCTATTATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGTCAGGAGAAAGAACAGAGGGGGTTCCTTCTGCTATTATAATT  500

seq1  GAGCCCCACAACCTTTCTGGTTTTGACAGTTTGCATCTTGACATCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCACAACCTTTCTGGTTTTGACAGTTTGCATCTTGACATCTAGAG  550

seq1  GTGTTTTCTCATTGAAAGGGTCAAAGCTGGGGCCCCAGCAGCCCTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTCATTGAAAGGGTCAAAGCTGGGGCCCCAGCAGCCCTAACAA  600

seq1  GTTAGGCCCAACCACCCATCCTTAATAAGCCAATTAAACAGATGCATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCCAACCACCCATCCTTAATAAGCCAATTAAACAGATGCATAAT  650

seq1  AGTGAAAAGCAGAGAAAGGCCATTTAGTCAATGTGAGCACATTGGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGCAGAGAAAGGCCATTTAGTCAATGTGAGCACATTGGGGAAA  700

seq1  GGAAAAAAAAGGGTCCAGGGACCCTGCCCCCCATGTCCATCTTCTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAGGGTCCAGGGACCCTGCCCCCCATGTCCATCTTCTGGACT  750

seq1  CATGACACAAGATTTTGGCTGTCCTTCAAGGTGATCTGATAGCTTTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACAAGATTTTGGCTGTCCTTCAAGGTGATCTGATAGCTTTTCAG  800

seq1  AACTGTGTGACATCTCTCCAGGAGACGAGTTCTTCCTCTGGCTGGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGACATCTCTCCAGGAGACGAGTTCTTCCTCTGGCTGGCACAG  850

seq1  GCTTCAGCCTTTCCCTTCTCCTAGCATCAGTCCCCTTGGGAGATTCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCCTTTCCCTTCTCCTAGCATCAGTCCCCTTGGGAGATTCCAAT  900

seq1  TCCTTGGGTACCATTGATTTAATAGTCTGATAGGCAAAGGGAGGGGCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGTACCATTGATTTAATAGTCTGATAGGCAAAGGGAGGGGCACA  950

seq1  GGCATCCCTTTCAGAGCATCCTCA-TTCCTGCCAGGAGGGCTACCATGCT  999
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GGCATCCCTTTCAGAGCATCCTCATTTCCTG-CAGGAGGGCTACCATGCT  999

seq1  ACACCATTTATTTCACAAACACA-GACTTTTAATTTATTAGTGAGTGCTA  1048
      ||| ||||||||||||||||||| ||||||| | |||| |||||||||||
seq2  ACA-CATTTATTTCACAAACACAGGACTTTT-AGTTATAAGTGAGTGCTA  1047

seq1  GCCCCCAGTCTTACCCAAAATTATCAC-TGGATTTTACAATAAAGTGTCC  1097
      | |||||||||||||    | |||||| || ||||||||   |||||| |
seq2  G-CCCCAGTCTTACC----AATATCACTTGAATTTTACA--TAAGTGT-C  1089

seq1  TCAACAGCAAAGTCACTTCCAGGAGTGAACTGCAA  1132
      || |||||  |||||||||||||| ||||||||||
seq2  TC-ACAGC--AGTCACTTCCAGGA-TGAACTGCAA  1120