BAC Information

Click to search

BAC

Clone NameB6Ng01-315G21
Chromosome6 (Build37)
Map Location 126,030,909 - 126,190,948
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315G21.bB6Ng01-315G21.g
ACCGA106082GA106083
length1,069800
definitionB6Ng01-315G21.b B6Ng01-315G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,030,909 - 126,031,992)(126,190,147 - 126,190,948)
sequence
gaattccagccacagaatgcagagagagctggctaggaagaatagctcta
tctggaagtgctaggtttgacttgtctcaaacaataatgtggaaaagtaa
cagggcacactccgggacatcaaccgcgggcctacacatggacgagtaat
gaagggtgcggtctaccatttccatacctacatttatgtaaatcatgtat
gcatgcatgcacattccaaacatgggaaaataatgctaaagctgtcagca
aagtgattttatttgctgttgttttgttttaagaccgaatctcacgatga
agcctcgctgggtcagcctcaaactcttgatccccctgtctaagcctctt
aagtttgagcgtggggcttaagggagtgtgccacatgaccagcaagcacc
acagtgtctctctgcaaccgtgattcctaggacgactttgccaaccagaa
gccatgaaacacattacccgtgactcagtttccttgatgacaaaaaaaga
aggaactgtaagacccacctctcaagaacaaataaggggtggtattttag
tcacttctctcagtgctgtgataaaagtcctgaatcaggcaactaaggaa
tgaggggattactttggtttaccatttgagggcacaactcaccccagaga
ggaaggggtggtgtcagagctgtgaagctcgtggtcctactgcatctgaa
gtctgaagcagagcctgatgaaagtctttgcttagctcagtttctcctct
ttattcagtctggaacctgagcccatggaatggtactgcctacatttggg
gtggatcaccccacatcaaagaacccaaggtagacattccctcgaagaca
gagccagaggttcgtcttcaacatgattccaaattgtctggttggaaatc
aatattaatcctcacagcgagcactactcggagaactgtccacttcaaat
tatatgctgctcacagggatgtagtagagtttattgtacttctgattctc
ttacatttcgttctgacttagctttaatggatgagccaatctcttccagc
tgcttcctgaattcctcaa
gaattctgtccctagaacagtgtccaggtcacaaagagcagaccagggat
attgagcaaagtgtgccaatgcagacccctccagtgttggtggttagaag
ttcttgtaccctgttgaggttctcacggttggagagcaggaggtgagtgg
aggaggtgagtagggcccaggttacccgtgctaccccgcgtgggactgaa
ttcacatcttctgctgtttggaacctcccacactgtctggtgaacctgcc
atgagccttgtgatgagggatgactagaggcaattccatcaacaatacca
taaaagaaattctaaaatgaacactgctcatatccctaaagcaagcaagc
ttcttcctatggggccacccacttgaagacaatgccctggtatcacacag
gagagaaagtgacaatgaaaagcagggagggtgaggccagctgttcccct
gagtgggggaggcagggacaggcatggttattaaaagctccatgacatac
tttggctttggtggtgaggttatgtctctacccatgggatcactccctcc
agggcagattgggaagacaatagtggcagcctggtcgagttattcatgtc
catggggcctaatcctgctacatgtttttgtccctttgataacgccctgc
cttgtgtctctacgtttgactctgtatttcttgacattgtggaacacatg
aatctcatctctcagcacaattgaggatattgtggctatggtgttctatc
gctactaccacttaaaaagcttacttggtgacactgtagtcccagtgctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126030909_126031992
seq2: B6Ng01-315G21.b_44_1112

seq1  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50

seq1  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAAGAATAATGTGGAAAAGTAA  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAACAATAATGTGGAAAAGTAA  100

seq1  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150

seq1  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200

seq1  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250

seq1  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACAGAATCTCACGATGA  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACCGAATCTCACGATGA  300

seq1  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350

seq1  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCAGC  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCACC  400

seq1  ACAGTGTCTCTCTGCAGCCATGATTCCTAGGACGACTTTGCCAACCAGAA  450
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  ACAGTGTCTCTCTGCAACCGTGATTCCTAGGACGACTTTGCCAACCAGAA  450

seq1  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAAGA  500

seq1  AGGAACTGTAAGACCCACCTCTCAAGAACAAAGAAGGGGTGGTATTTTAG  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAACTGTAAGACCCACCTCTCAAGAACAAATAAGGGGTGGTATTTTAG  550

seq1  TCACTTCTCTCAGTGCTGTGATAAAAATCCTGAATCAGGCAACTAAGGAA  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCACTTCTCTCAGTGCTGTGATAAAAGTCCTGAATCAGGCAACTAAGGAA  600

seq1  GGAAGGGTTTACTTTGGTTTACCATTTGAGGGCACAGCTCACCCCAGCAA  650
       || ||| |||||||||||||||||||||||||||| ||||||||||  |
seq2  TGAGGGGATTACTTTGGTTTACCATTTGAGGGCACAACTCACCCCAGAGA  650

seq1  GGAAGGCGTGGTGTCAGAGCTGTGAAGCAGGTGGTCCTACTGCATCTGAA  700
      |||||| |||||||||||||||||||||  ||||||||||||||||||||
seq2  GGAAGGGGTGGTGTCAGAGCTGTGAAGCTCGTGGTCCTACTGCATCTGAA  700

seq1  GTCAGGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  750
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-TGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  749

seq1  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  799

seq1  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  849

seq1  AGAGCCAGAGGTTCGTCTTCAACATGATTCCAAAATTGTCTGGTTGGAAA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAGCCAGAGGTTCGTCTTCAACATGATTCC-AAATTGTCTGGTTGGAAA  898

seq1  TCAATATTAATCCTCACAGAAGGAGGCAACTACTCGGAGGAAACTGTCCA  950
      |||||||||||||||||||   |||   |||||||||||  |||||||||
seq2  TCAATATTAATCCTCACAG--CGAG--CACTACTCGGAG--AACTGTCCA  942

seq1  CTTCAAATTATATGGCTGCCCACAGGGATGTAGTAGAGTTTAATTGGTAC  1000
      ||||||||||||| ||||| ||||||||||||||||||||||  | ||||
seq2  CTTCAAATTATAT-GCTGCTCACAGGGATGTAGTAGAGTTTA--TTGTAC  989

seq1  TTTCTGAATTCTCTTACATTTTTGGTTCTGAACCTAGCCTTTAATGGATG  1050
       ||||| |||||||||||  ||| |||||| || ||| ||||||||||||
seq2  -TTCTG-ATTCTCTTACA--TTTCGTTCTG-ACTTAG-CTTTAATGGATG  1033

seq1  AGCC-ATCTC-TCCAGCCTGCTTCCTGAATT-CTCAA  1084
      |||| ||||| ||||| |||||||||||||| |||||
seq2  AGCCAATCTCTTCCAG-CTGCTTCCTGAATTCCTCAA  1069

seq1: chr6_126190147_126190948
seq2: B6Ng01-315G21.g_67_866 (reverse)

seq1  AAGCATTGGGATTACAGTGTCACCAAGTAAGCTTTTTATGTGGGTTGTAG  50
      ||||| ||||| |||||||||||||||||||||||||| || ||| ||||
seq2  AAGCACTGGGACTACAGTGTCACCAAGTAAGCTTTTTAAGT-GGTAGTAG  49

seq1  CGATCGAACACCATAGCCACACTATCCTCAATTCTGCTCAGAGCTGAGAT  100
      |||| |||||||||||||||| ||||||||||| |||| |||| ||||||
seq2  CGATAGAACACCATAGCCACAATATCCTCAATTGTGCTGAGAGATGAGAT  99

seq1  TCATTTTTTCCACAATGTCAAGAACTACAGAGTCAAGCTTAGAGACACAA  150
      |||| | ||||||||||||||||| ||||||||||| | |||||||||||
seq2  TCATGTGTTCCACAATGTCAAGAAATACAGAGTCAAACGTAGAGACACAA  149

seq1  GGCAGGGCCTTATCAAAGGGAC-AACACATGTAGCAGGATTAGGCCCCAT  199
      |||||||| ||||||||||||| || ||||||||||||||||||||||||
seq2  GGCAGGGCGTTATCAAAGGGACAAAAACATGTAGCAGGATTAGGCCCCAT  199

seq1  GGACATGAATAACTCGACCAGGCTGCCACTATTGTCTTCCCAATCTGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAATAACTCGACCAGGCTGCCACTATTGTCTTCCCAATCTGCCC  249

seq1  TGGAGGGAGTGATCCCATGGGTTGAGACATAACCTCACCACCAAAGCCAA  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGAGGGAGTGATCCCATGGGTAGAGACATAACCTCACCACCAAAGCCAA  299

seq1  AGTATGTCATGGAGCTTTTAATAACCATGCCTGTCCCTGCCTCCCCCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCATGGAGCTTTTAATAACCATGCCTGTCCCTGCCTCCCCCACT  349

seq1  CAGGGGAACAGCTGGCCTCACCCTCCCTGCTTCTCATTGTCACTTTCTCT  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGGGAACAGCTGGCCTCACCCTCCCTGCTTTTCATTGTCACTTTCTCT  399

seq1  CCTGTGTGATACCAGGGCATTGTCTTCAAGTGGGTGGCCCCATAGGAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGATACCAGGGCATTGTCTTCAAGTGGGTGGCCCCATAGGAAGA  449

seq1  AGCTTGCTTGCTTTAGGGATATGAGCAGTGTTCATTTTAGAATTTCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTGCTTTAGGGATATGAGCAGTGTTCATTTTAGAATTTCTTTT  499

seq1  ATGCTATTGTTGATGGAATTGCCTCTCTGCATGATGGTTTCAAAAGGCAT  549
      ||| ||||||||||||||||||||||   |||       ||| |||||  
seq2  ATGGTATTGTTGATGGAATTGCCTCTAGTCAT-CCCTCATCACAAGGCTC  548

seq1  ATGGGAGATTCAGCCTA-ATTAGGGGGCCCACTGAACTCTTTACTTGATG  598
      |||| || |||| |  | | |  |||     |  ||  |   |   ||||
seq2  ATGGCAGGTTCACCAGACAGTGTGGGAGGTTCCAAA--CAGCAGAAGATG  596

seq1  TAATTTCAGTCCCACCCAGGCTTACCTGGGTTACCCGGGCCCTACTCACC  648
      | | ||||||||||| | || |  |  |||| ||| ||||||||||||||
seq2  TGAATTCAGTCCCACGCGGGGTAGCACGGGTAACCTGGGCCCTACTCACC  646

seq1  TCCTCCACTCACCTCCTGCTCTCCAACCGTGAGAACCTCAACAGGGTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACTCACCTCCTGCTCTCCAACCGTGAGAACCTCAACAGGGTACA  696

seq1  AGAACTTCTAACCACCAACACTGGAGGGGTCTGCATTGGCACACTTTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTAACCACCAACACTGGAGGGGTCTGCATTGGCACACTTTGCT  746

seq1  CAATATGCCTTGTCTGCTCTTTGTGACCTGGACACTGTTCTAGGGACAGA  798
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCTGGTCTGCTCTTTGTGACCTGGACACTGTTCTAGGGACAGA  796

seq1  ATTC  802
      ||||
seq2  ATTC  800