BAC Information

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BAC

Clone NameB6Ng01-315I07
Chromosome6 (Build37)
Map Location 48,407,501 - 48,545,185
singlet/doubletdoublet
Overlap geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1
Upstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneZfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315I07.bB6Ng01-315I07.g
ACCGA106148GA106149
length1,0161,082
definitionB6Ng01-315I07.b B6Ng01-315I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,407,501 - 48,408,510)(48,544,096 - 48,545,185)
sequence
gaattcttcacactcaggcagggtatgtctggactattgttgatggctct
gtcctgtctcttgcccacagtgtgtgccagggccagcgctggcactgtac
aggtcagcggtgcagtggatggtgccaggcgtccggcgcaccccactatg
tgacgttcgatgggctggtctttacctttcctggggcctgcgagtacctg
ctggtgagagaggctggtggccgcttcagtgtctccgtccagaacttgcc
ttgtggggccagtggcctcacatgtaccaaggcgttggttgtgcgtctgg
acagcactgttgtgcacatgctgagaggtgactgtgacctagcaagaatg
gctggatacaggcagagggtgtggggtaaagcagcgtagcatcatagctc
ttcccagctcctccctgggttttgttgtcctatggtggggtggggtggag
ccaaaactctggaaggctgtgagatcgaggcccagagaagactaatgacc
cacccaaggtcacctaggaaatgatgcaaaagaaagtttggaagagtggc
tgggtggatctctcggggaccaaactaagtttaacaccttcccttcttct
tcaggccaggccgtaacagtgaatggagtgagcataaggctccccaaagt
ctatacaggccccggcctgagcctgcaccatgctggcctcttccctgctg
ctgacaacacgcctgggtctcactctgctctgggatggaggtcaggctct
gtccttctgcccttagcccacactaggccttcacgctggcagctggattt
cccccagacccttcttcctcagtgcctgccaagctctgaggtagaggcag
acccctgagcccactcaggacccatctccagtatgacagccagccaagat
atctgctgcctcccacctttccaccctcttgcccggtgccccttcaccca
gtggccacccatgtcttagagcctctaaaaatggtttggagcctttccat
aatatacgtatcataa
gaattcctttacagcctgctctcttttgggggactacagacatgactcaa
ccccaccaacccccaactcccacccccgcctgaacccagggaagactcca
tgataggagaatggattccttccccagtacatccctgtcctgcaagtata
ggagacatgagcgctggagttatgggttggtttgagggcacaagaaaggc
caaactctaccctgaagactgaagagctgggggtgaggctttttccagct
ccttctggggatgttcctggggagacttcggctgcttcggcccacacttc
ggtagcccccggatgacagagaaaactgtagcaataaagacatccctatc
cccatggcagagctcagacctctaactgctgagaggtcagccttacctgg
ggaagggagagaaaagaacgagtgtgaggctctgcgctaagccagggcag
gtttgtgtcatcacccagtctctcccagattcaaggctacagagttcagc
cttgaactccatacccagcctggtcgaatgacctagcggacactgaacta
aataaagcatgagcatgaccctttactgaggaagcacagtgctgcctttg
gaggccacctcctagcctggtagggccccagaagaatagcctcctccatc
tgttgcaaggctctttctcagtggccaaagggctgcctaggcagtaactc
tggaatccctattgcctccccttcccccactctccgcgcaacataaattc
caggcctgtctcccgagggtctacgcagggagcgccagagtgcccaggac
tctccagaatttccttggtcatctagggcagccccgggtggcagcaggcc
cacacactccccctttgtatagatgcgtgtcctccgtccacatttgctgg
ctcgctggaccgggttcggaccagccagtgggccatctcgggtcccacgc
acagcgcagcccgcgagcctgtgcgcagtgcgctcgccccgcgctcacac
tccccccccccttcatatccgcgcgcgcgcgcgaccccacagcggcacac
actcacgttcacgcgcccacaggtgagctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48407501_48408510
seq2: B6Ng01-315I07.b_47_1062

seq1  GAATTCTTCACACTCAGGCAGGGTATGTCTGGACTATTGTTGATGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACACTCAGGCAGGGTATGTCTGGACTATTGTTGATGGCTCT  50

seq1  GTCCTGTCTCTTGCCCACAGTGTGTGCCAGGGCCAGCGCTGGCACTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCTCTTGCCCACAGTGTGTGCCAGGGCCAGCGCTGGCACTGTAC  100

seq1  AGGTCAGCGGTGCAGTGGATGGTGCCAGGCGTCCGGCGCACCCCACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCGGTGCAGTGGATGGTGCCAGGCGTCCGGCGCACCCCACTATG  150

seq1  TGACGTTCGATGGGCTGGTCTTTACCTTTCCTGGGGCCTGCGAGTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTCGATGGGCTGGTCTTTACCTTTCCTGGGGCCTGCGAGTACCTG  200

seq1  CTGGTGAGAGAGGCTGGTGGCCGCTTCAGTGTCTCCGTCCAGAACTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGAGAGGCTGGTGGCCGCTTCAGTGTCTCCGTCCAGAACTTGCC  250

seq1  TTGTGGGGCCAGTGGCCTCACATGTACCAAGGCGTTGGTTGTGCGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGCCAGTGGCCTCACATGTACCAAGGCGTTGGTTGTGCGTCTGG  300

seq1  ACAGCACTGTTGTGCACATGCTGAGAGGTGACTGTGACCTAGCAAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGTTGTGCACATGCTGAGAGGTGACTGTGACCTAGCAAGAATG  350

seq1  GCTGGATACAGGCAGAGGGTGTGGGGTAAAGCAGCGTAGCATCATAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATACAGGCAGAGGGTGTGGGGTAAAGCAGCGTAGCATCATAGCTC  400

seq1  TTCCCAGCTCCTCCCTGGGTTTTGTTGTCCTATGGTGGGGTGGGGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCTCCTCCCTGGGTTTTGTTGTCCTATGGTGGGGTGGGGTGGAG  450

seq1  CCAAAACTCTGGAAGGCTGTGAGATCGAGGCCCAGAGAAGACTAATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTCTGGAAGGCTGTGAGATCGAGGCCCAGAGAAGACTAATGACC  500

seq1  CACCCAAGGTCACCTAGGAAATGATGCAAAAGAAAGTTTGGAAGAGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGGTCACCTAGGAAATGATGCAAAAGAAAGTTTGGAAGAGTGGC  550

seq1  TGGGTGGATCTCTCGGGGACCAAACTAAGTTTAACACCTTCCCTTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGATCTCTCGGGGACCAAACTAAGTTTAACACCTTCCCTTCTTCT  600

seq1  TCAGGCCAGGCCGTAACAGTGAATGGAGTGAGCATAAGGCTCCCCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGGCCGTAACAGTGAATGGAGTGAGCATAAGGCTCCCCAAAGT  650

seq1  CTATACAGGCCCCGGCCTGAGCCTGCACCATGCTGGCCTCTT-CCTGCTG  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTATACAGGCCCCGGCCTGAGCCTGCACCATGCTGGCCTCTTCCCTGCTG  700

seq1  CTGACAACACGCCTGGGTCTCACTCTGCTCTGGGATGGAGGTCAGGCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACACGCCTGGGTCTCACTCTGCTCTGGGATGGAGGTCAGGCTCT  750

seq1  GTCCTTCTGCCCTTAGCCCACACTAGGCCTTCACGCTGGCAGCTGGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGCCCTTAGCCCACACTAGGCCTTCACGCTGGCAGCTGGATTT  800

seq1  CCCCCAGACCCTTCTTCCTCAGTGCCTGCCAAGCTCTGAGGTAGAGGCGG  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCCCAGACCCTTCTTCCTCAGTGCCTGCCAAGCTCTGAGGTAGAGGCAG  850

seq1  ACCCCTGAGCCCACTCAGGACCCATCTCCAGTATGACAGCCAAGCCAAGA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCCCTGAGCCCACTCAGGACCCATCTCCAGTATGACAGCC-AGCCAAGA  899

seq1  TATCTGCTGCCTCCCACCTTTCCACCCTC-TGCCCGGTGCCCC-TCACCC  947
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TATCTGCTGCCTCCCACCTTTCCACCCTCTTGCCCGGTGCCCCTTCACCC  949

seq1  AGTGGCCACCCATGTCTTAGAGCCTCTAAAAATGG-TTGGAGC--TTCCA  994
      ||||||||||||||||||||||||||||||||||| |||||||  |||||
seq2  AGTGGCCACCCATGTCTTAGAGCCTCTAAAAATGGTTTGGAGCCTTTCCA  999

seq1  TATTATA-TTTTCATAA  1010
      || ||||  | ||||||
seq2  TAATATACGTATCATAA  1016

seq1: chr6_48544096_48545185
seq2: B6Ng01-315I07.g_65_1146 (reverse)

seq1  GGCAGCTCCACCTGTGGGGCGCGTGACCGTGAGTGTGTGCGGCTGTGGGG  50
      ||||||| ||||||| |||||||||| ||||||||||||| |||||||||
seq2  GGCAGCT-CACCTGT-GGGCGCGTGAACGTGAGTGTGTGCCGCTGTGGGG  48

seq1  TTCGCGCGCGCGCGCGGAATATGAAAGGGGGGGGGGAGTGTTGAGGCGCG  100
       |||||||||||||||| ||||| |||||||||||||||| ||| |||||
seq2  -TCGCGCGCGCGCGCGG-ATATG-AAGGGGGGGGGGAGTG-TGA-GCGCG  93

seq1  GGGCGAGCGCACCTGCGCACAGGCTCCGCGGGCTGCGCTGTGCGTGGGAC  150
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GGGCGAGCGCA-CTGCGCACAGGCT-CGCGGGCTGCGCTGTGCGTGGGAC  141

seq1  CCGAGATGGCCCACTGGCTGGTCCGAA-CCGGTCCAGCGAGCCAGCAAAT  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCGAGATGGCCCACTGGCTGGTCCGAACCCGGTCCAGCGAGCCAGCAAAT  191

seq1  GTGGACGGAGGACACGCATCTATACAAAGGGGGAGTGTGTGGGCCTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGGAGGACACGCATCTATACAAAGGGGGAGTGTGTGGGCCTGCTG  241

seq1  CCACCCGGGGCTGCCCTAGATGACCAAGGAAATTCTGGAGAGTCCTGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGGGGCTGCCCTAGATGACCAAGGAAATTCTGGAGAGTCCTGGGC  291

seq1  ACTCTGGCGCTCCCTGCGTAGACCCTCGGGAGACAGGCCTGGAATTTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCGCTCCCTGCGTAGACCCTCGGGAGACAGGCCTGGAATTTATG  341

seq1  TTGCGCGGAGAGTGGGGGAAGGGGAGGCAATAGGGATTCCAGAGTTACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCGGAGAGTGGGGGAAGGGGAGGCAATAGGGATTCCAGAGTTACTG  391

seq1  CCTAGGCAGCCCTTTGGCCACTGAGAAAGAGCCTTGCAACAGATGGAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCAGCCCTTTGGCCACTGAGAAAGAGCCTTGCAACAGATGGAGGA  441

seq1  GGCTATTCTTCTGGGGCCCTACCAGGCTAGGAGGTGGCCTCCAAAGGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTTCTGGGGCCCTACCAGGCTAGGAGGTGGCCTCCAAAGGCAG  491

seq1  CACTGTGCTTCCTCAGTAAAGGGTCATGCTCATGCTTTATTTAGTTCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCTTCCTCAGTAAAGGGTCATGCTCATGCTTTATTTAGTTCAGT  541

seq1  GTCCGCTAGGTCATTCGACCAGGCTGGGTATGGAGTTCAAGGCTGAACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCTAGGTCATTCGACCAGGCTGGGTATGGAGTTCAAGGCTGAACTC  591

seq1  TGTAGCCTTGAATCTGGGAGAGACTGGGTGATGACACAAACCTGCCCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGAATCTGGGAGAGACTGGGTGATGACACAAACCTGCCCTGG  641

seq1  CTTAGCGCAGAGCCTCACACTCGTTCTTTTCTCTCCCTTCCCCAGGTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGCAGAGCCTCACACTCGTTCTTTTCTCTCCCTTCCCCAGGTAAG  691

seq1  GCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGAT  741

seq1  GTCTTTATTGCTACAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTGCTACAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGG  791

seq1  GCCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAA  841

seq1  AAGCCTCACCCCCAGCTCTTCAGTCTTCAGGGTAGAGTTTGGCCTTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCACCCCCAGCTCTTCAGTCTTCAGGGTAGAGTTTGGCCTTTCTT  891

seq1  GTGCCCTCAAACCAACCCATAACTCCAGCGCTCATGTCTCCTATACTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCAAACCAACCCATAACTCCAGCGCTCATGTCTCCTATACTTGC  941

seq1  AGGACAGGGATGTACTGGGGAAGGAATCCATTCTCCTATCATGGAGTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGATGTACTGGGGAAGGAATCCATTCTCCTATCATGGAGTCTT  991

seq1  CCCTGGGTTCAGGCGGGGGTGGGAGTTGGGGGTTGGTGGGGTTGAGTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTTCAGGCGGGGGTGGGAGTTGGGGGTTGGTGGGGTTGAGTCAT  1041

seq1  GTCTGTAGTCCCCCAAAAGAGAGCAGGCTGTAAAGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGTCCCCCAAAAGAGAGCAGGCTGTAAAGGAATTC  1082