BAC Information

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BAC

Clone NameB6Ng01-316C04
Chromosome6 (Build37)18 (Build37)
Map Location 101,888,807 - 101,889,84428,632,916 - 28,633,003
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C04.bB6Ng01-316C04.g
ACCGA106605GA106606
length1,054668
definitionB6Ng01-316C04.b B6Ng01-316C04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,888,807 - 101,889,844)(28,632,916 - 28,633,003)
sequence
gaattcacaactgtgtcctgctctaagaaagttctgtgccattttataac
agtaagggagagagagagagaaaatagacaccgcagaatagcatatgggc
tgaatcagttattcattgttcattgtttttaaaggggctgctcttcagca
tggaatggacttatgcaatttgtgcttaggatcaaattgtcccatctgag
aagggaatctgcatggatacagtacttgcagcgtgagaatgaacagacga
attggcctagaaccaaactgtggtgttgcatgcataagagtcaagtcttc
gtgctctctataaaattcatattggagcacaatgcgttgctcatcgccaa
tatcatatcattctctgattttattcaaaagaagtgtatatttttcatta
tacacttttgaaatttagagacatagaggttgataattttaaacttttac
aaccacgattagatttaatcaatagttaaggagaaaggtgcaatttagtt
atttccaaaattatattttcttgttaccattaggagaggcagatctactg
gtatcttggtggcgaagactagaggtgctatgagatattccagagtgcca
aacatcagccctgataatcttggaggttcagatctcttgaggcctccagc
aatctgccaggaaacaatattcttaccaaaagcaacttggaccttgggag
gcttcactgccatcacacacaaagacatgaccacacacaattcttttttt
tttaattaggtactctcttcattcacatctccagtactatcccaaaagtc
ccctccccaccctcccccaccactcccccacctacccactcccactttct
ggccctggcattcccctgcacttgaggtatataaagtctgcacgaccaat
ggggtgggcctcttcttttcactgatggcaagaccaggcccattcctctg
atacatattagctagagacacgagctcccgggagggcactggataagttc
ataatggttgttcttacctttaatgtttgcagattccccttcagcttcct
tgga

gaattccataatagcttctcaagtttgtactctgaccagcaataaatgat
taatcaatgacatctaatggaagacttggacataaatcaacacacctatg
tatgcttcatttaaaaaaaagaaacctgaaatacattttggaaaagagaa
agtatcttcaacaaacggtgccaatcaaaccaaatgactgtatagggaag
aatacaaataaatctatacttattgagtttgatcagcagtaagtcgcaga
agctgaaaacattcagggcttagattagattgtatggaggtaagaagctt
ccagaactaggcctaggttagtagaactcaactccaaatacattaaaggc
ttcaacataaaccagatacaatgtacttgattgaagataaaataggaact
agccttgaactctgccccaactaatcccttactattggcacaggaaaaga
ttttctgaacaaaacactgcacaggcactaagactgccaattaataaatg
agacctcttgaaactgaaaagtttctgcacatcaaagagcactgtcatct
gacaaagcagcagcccatagagttggaaacaatgtttaccaactacagat
ttgagagagtgctaatattatatatatatatacatatgtgtgtgtgtgtt
ttgttgtgtgtgtatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101888807_101889844
seq2: B6Ng01-316C04.b_46_1099

seq1  GAATTCACAACTGTGTCCTGCTCTAAGAAAGTTCTGTGCCATTTTATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTGTGTCCTGCTCTAAGAAAGTTCTGTGCCATTTTATAAC  50

seq1  AGTAAGGGAGAGAGAGAGAGAAAATAGACACCGCAGAATAGCATATGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGAGAGAGAGAGAGAAAATAGACACCGCAGAATAGCATATGGGC  100

seq1  TGAATCAGTTATTCATTGTTCATTGTTTTTAAAGGGGCTGCTCTTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTTATTCATTGTTCATTGTTTTTAAAGGGGCTGCTCTTCAGCA  150

seq1  TGGAATGGACTTATGCAATTTGTGCTTAGGATCAAATTGTCCCATCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGACTTATGCAATTTGTGCTTAGGATCAAATTGTCCCATCTGAG  200

seq1  AAGGGAATCTGCATGGATACAGTACTTGCAGCGTGAGAATGAACAGACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATCTGCATGGATACAGTACTTGCAGCGTGAGAATGAACAGACGA  250

seq1  ATTGGCCTAGAACCAAACTGTGGTGTTGCATGCATAAGAGTCAAGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTAGAACCAAACTGTGGTGTTGCATGCATAAGAGTCAAGTCTTC  300

seq1  GTGCTCTCTATAAAATTCATATTGGAGCACAATGCGTTGCTCATCGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCTATAAAATTCATATTGGAGCACAATGCGTTGCTCATCGCCAA  350

seq1  TATCATATCATTCTCTGATTTTATTCAAAAGAAGTGTATATTTTTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATCATTCTCTGATTTTATTCAAAAGAAGTGTATATTTTTCATTA  400

seq1  TACACTTTTGAAATTTAGAGACATAGAGGTTGATAATTTTAAACTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTGAAATTTAGAGACATAGAGGTTGATAATTTTAAACTTTTAC  450

seq1  AACCACGATTAGATTTAATCAATAGTTAAGGAGAAAGGTGCAATTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGATTAGATTTAATCAATAGTTAAGGAGAAAGGTGCAATTTAGTT  500

seq1  ATTTCCAAAATTATATTTTCTTGTTACCATTAGGAGAGGCAGATCTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAATTATATTTTCTTGTTACCATTAGGAGAGGCAGATCTACTG  550

seq1  GTATCTTGGTGGCGAAGACTAGAGGTGCTATGAGATATTCCAGAGTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGGTGGCGAAGACTAGAGGTGCTATGAGATATTCCAGAGTGCCA  600

seq1  AACATCAGCCCTGATAATCTTGGAGGTTCAGATCTCTTGAGGCCTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGCCCTGATAATCTTGGAGGTTCAGATCTCTTGAGGCCTCCAGC  650

seq1  AATCTGCCAGGAAACAATATTCTTACCAAAAGCAACTTGGACCTTGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCAGGAAACAATATTCTTACCAAAAGCAACTTGGACCTTGGGAG  700

seq1  GCTTCACTGCCATCACACACAAAGACATGACCACACACAATTCTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTGCCATCACACACAAAGACATGACCACACACAATTCTTTTTTT  750

seq1  TTTAATTAGGTACTCTCTTCATTCACATCTCCAGTACTATCCCAAAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGGTACTCTCTTCATTCACATCTCCAGTACTATCCCAAAAGTC  800

seq1  CCCTCCCCACCCTCCCCCACCACTCCCCCACCTACCCACTCCCACTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCACCCTCCCCCACCACTCCCCCACCTACCCACTCCCACTTTCT  850

seq1  GGCCCTGGCATTCCCCTGCAC-TGAGGTATATAAAGTCTGCACGACCAAT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCCTGGCATTCCCCTGCACTTGAGGTATATAAAGTCTGCACGACCAAT  900

seq1  -GGGTGGGCCTC-TCTTTCCACTGATGGC-AGACCAGG-CCATT-CTCTG  944
       ||||||||||| ||||| |||||||||| |||||||| ||||| |||||
seq2  GGGGTGGGCCTCTTCTTTTCACTGATGGCAAGACCAGGCCCATTCCTCTG  950

seq1  ATACATA-TAGCTAGAGACACGAGCTCC--GGGGGGCACTGG-TTAGTTC  990
      ||||||| ||||||||||||||||||||  || ||||||||| | |||||
seq2  ATACATATTAGCTAGAGACACGAGCTCCCGGGAGGGCACTGGATAAGTTC  1000

seq1  AT-ATTGTTGTTC-TACCCATAA-GGTTGCAGAT--CCCCTCAGC-TCCT  1034
      || || ||||||| ||||  ||| | ||||||||  ||| ||||| ||||
seq2  ATAATGGTTGTTCTTACCTTTAATGTTTGCAGATTCCCCTTCAGCTTCCT  1050

seq1  TGGA  1038
      ||||
seq2  TGGA  1054


seq1: chr18_28632916_28633003
seq2: B6Ng01-316C04.g_680_731 (reverse)

seq1  CAAATACACACACACACATACATATATACATACACACACACACACATAAA  50
      ||||||||||||||             ||| | ||||||||||||||   
seq2  CAAATACACACACA-------------ACA-AAACACACACACACAT---  33

seq1  TGTACATATTTGTATATACATGTATATATATATATAAT  88
                         |||||||||||||||||||
seq2  -------------------ATGTATATATATATATAAT  52


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