BAC Information

Click to search

BAC

Clone NameB6Ng01-316C12
Chromosome6 (Build37)7 (Build37)
Map Location 93,258,154 - 93,258,39970,364,645 - 70,365,747
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C12.bB6Ng01-316C12.g
ACCGA106621GA106622
length2681,110
definitionB6Ng01-316C12.b B6Ng01-316C12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,258,154 - 93,258,399)(70,364,645 - 70,365,747)
sequence
tttgcttagcactataccccatttttaatagggttatttgattttctgga
gtccagcttcttgagttctttgtatatattgaatattagtctgctatcag
atttaggattgataacgagtctttcccaatctgttggttgcctttttgtc
ttattgacagtgtcttttgccttacagaagctttgtaattttatgaggtc
ccatttgtggatgctcgatcttacagcacaagccattgctgttctattca
ggaatttttcccctgtgc

gaattcactgtgaagaggagaagagggactcgggagttgagtctgaacag
gtaagggctcctggaagctggtgggggataggcatcactctccttcacag
ctttcacgaatcatcagaaaacttcatattgatagatgagaaaagaaaaa
ttgggctagagtggcttaggacttaagagtactctgctggtgcagaggga
ccaggttcagtctcacgaacttacgtgatgactcataaccatctgtaacg
ctacttctgggaaatttggtgatgcttctggcctccaaggataccaggtg
tgtatgtaacgaacgtgcaggccaaacgctcatgaatataaaaatagatc
ttttctttaaaacaaagatatagccagtattatcataatagatgcttacc
aacgatctattttcactgatttctaaaaagcataaaaatttctatctgaa
atagaagaaaaggaaagtttcttttaaaatcgaaaacatttgtgtggtgt
ctgtacatgtgcccatagatgtgtgcacatgtgtagcaggaacgttaggg
gttcctctatgtaaaatctgggggctgcacagccacaaaagcatctcctg
caggaggacctaattgaggactgcctgagagaccaagaattgctgatgca
gacaatgccagccaatcgggaactgctgtttagaagagatgctttcttgg
gactaatggggcatgggtggagggtaataaaggagcttgcagtgttcaga
gaacttgctgcactgtttctcacctgctccccgagtctgtgtcattgact
ctgtgccacctcacctccaaccccctgcaggtagggtcaggcaacaatgt
gtgagtgtgtgcctgtgcatgtacgtgtatgtgtgtgtgttcatgaggtg
aagttgatgtcagcttatttttttttggttactctctaccttattttttt
gatacagaattacactgaacccggtactcattcatttggctaggcctggt
tggccaatgagtccaggaaatccttttttcttgtgcatctcaacacagta
ctgggggtgcatcaaatgcatacaactgtgccttgaattttacatggaat
gctgaagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93258154_93258399
seq2: B6Ng01-316C12.b_74_318 (reverse)

seq1  GCACAGGGGAAAAAATTCCTGAGCAGAACAGCAATGGCTTGTGATGTAAG  50
      ||||||||| ||||||||||||  ||||||||||||||||||| ||||||
seq2  GCACAGGGG-AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAG  49

seq1  ATCGAGAATCGACAAATGGAACCTCATAAAATTGCAAAGCTTCTGTAAGG  100
      |||||| ||| |||||||| ||||||||||||| ||||||||||||||||
seq2  ATCGAGCATCCACAAATGGGACCTCATAAAATTACAAAGCTTCTGTAAGG  99

seq1  CAAAGGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGGAAAG  150
      |||| ||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CAAAAGACACTGTCAATAAGACAAAAAGGCAACCAACAGATT-GGGAAAG  148

seq1  A-TCTTTATCAATCCTAAATCCGACAGGAAACTAATATCCAATATATACA  199
      | || |||||||||||||||| || || | |||||||| |||||||||||
seq2  ACTCGTTATCAATCCTAAATCTGATAGCAGACTAATATTCAATATATACA  198

seq1  AAGAACTCAAGAAGCTGAACTCCAGAAAACCAAATAACCCTATTAAA  246
      ||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AAGAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCTATTAAA  245


seq1: chr7_70364645_70365747
seq2: B6Ng01-316C12.g_70_1179 (reverse)

seq1  GGTCTCCAGCA-TCCATGTAAAATTC-AGGCACAGTGGTATGCATTTGAT  48
      ||||| ||||| |||||||||||||| ||||||||| |||||||||||||
seq2  GGTCTTCAGCATTCCATGTAAAATTCAAGGCACAGTTGTATGCATTTGAT  50

seq1  GCA-CCCCAGTACTGTGGTTGGAGATGCACA--GAAAAAGGA-TTCCTGG  94
      ||| |||||||||||||  | ||||||||||   |||||||| |||||||
seq2  GCACCCCCAGTACTGTG--TTGAGATGCACAAGAAAAAAGGATTTCCTGG  98

seq1  ACCTCATTGGCCAACCA-GCCTAGCCAAATGAATGAGTACC-GGTTCAGT  142
      | ||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  A-CTCATTGGCCAACCAGGCCTAGCCAAATGAATGAGTACCGGGTTCAGT  147

seq1  GTAATTCTGTATC-AAAAAATAAGGTAGAGAGTAACCAAAAAAAA--TAG  189
      ||||||||||||| |||||||||||||||||||||||||||||||   ||
seq2  GTAATTCTGTATCAAAAAAATAAGGTAGAGAGTAACCAAAAAAAAATAAG  197

seq1  CTGACATCAACTTCACCTCATGAACACACACACATACACGTACATGCACA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCAACTTCACCTCATGAACACACACACATACACGTACATGCACA  247

seq1  GGCACACACTCACACATTTGTTGCCTGACCCTACCTGCAGGGGGTTGGAG  289
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCACACACTCACACA-TTGTTGCCTGACCCTACCTGCAGGGGGTTGGAG  296

seq1  GTGAGGTGGCACAGAGTCAATGACACAGACTCGGGGAGCAGGTGAGAAAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGCACAGAGTCAATGACACAGACTCGGGGAGCAGGTGAGAAAC  346

seq1  AGTGCAGCAAGTTCTCTGAACACTGCAAGCTCCTTTATTACCCTCCACCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCAAGTTCTCTGAACACTGCAAGCTCCTTTATTACCCTCCACCC  396

seq1  ATGCCCCATTAGTCCCAAGAAAGCATCTCTTCTAAACAGCAGTTCCCGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCATTAGTCCCAAGAAAGCATCTCTTCTAAACAGCAGTTCCCGAT  446

seq1  TGGCTGGCATTGTCTGCATCAGCAATTCTTGGTCTCTCAGGCAGTCCTCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCATTGTCTGCATCAGCAATTCTTGGTCTCTCAGGCAGTCCTCA  496

seq1  ATTAGGTCCTCCTGCAGGAGATGCTTTTGTGGCTGTGCAGCCCCCAGATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCCTCCTGCAGGAGATGCTTTTGTGGCTGTGCAGCCCCCAGATT  546

seq1  TTACATAGAGGAACCCCTAACGTTCCTGCTACACATGTGCACACATCTAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGAGGAACCCCTAACGTTCCTGCTACACATGTGCACACATCTAT  596

seq1  GGGCACATGTACAGACACCACACAAATGTTTTCGATTTTAAAAGAAACTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATGTACAGACACCACACAAATGTTTTCGATTTTAAAAGAAACTT  646

seq1  TCCTTTTCTTCTATTTCAGATAGAAATTTTTATGCTTTTTAGAAATCAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTCTATTTCAGATAGAAATTTTTATGCTTTTTAGAAATCAGT  696

seq1  GAAAATAGATCGTTGGTAAGCATCTATTATGATAATACTGGCTATATCTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGATCGTTGGTAAGCATCTATTATGATAATACTGGCTATATCTT  746

seq1  TGTTTTAAAGAAAAGATCTATTTTTATATTCATGAGCGTTTGGCCTGCAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAGAAAAGATCTATTTTTATATTCATGAGCGTTTGGCCTGCAC  796

seq1  GTTCGTTACATACACACCTGGTATCCTTGGAGGCCAGAAGCATCACCAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTACATACACACCTGGTATCCTTGGAGGCCAGAAGCATCACCAAA  846

seq1  TTTCCCAGAAGTAGCGTTACAGATGGTTATGAGTCATCACGTAAGTTCGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGAAGTAGCGTTACAGATGGTTATGAGTCATCACGTAAGTTCGT  896

seq1  GAGACTGAACCTGGTCCCTCTGCACCAGCAGAGTACTCTTAAGTCCTAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAACCTGGTCCCTCTGCACCAGCAGAGTACTCTTAAGTCCTAAG  946

seq1  CCACTCTAGCCCAATTTTTCTTTTCTCATCTATCAATATGAAGTTTTCTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTAGCCCAATTTTTCTTTTCTCATCTATCAATATGAAGTTTTCTG  996

seq1  ATGATTCGTGAAAGCTGTGAAGGAGAGTGATGCCTATCCCCCACCAGCTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCGTGAAAGCTGTGAAGGAGAGTGATGCCTATCCCCCACCAGCTT  1046

seq1  CCAGGAGCCCTTACCTGTTCAGACTCAACTCCCGAGTCCCTCTTCTCCTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCCTTACCTGTTCAGACTCAACTCCCGAGTCCCTCTTCTCCTC  1096

seq1  TTCACAGTGAATTC  1103
      ||||||||||||||
seq2  TTCACAGTGAATTC  1110


| Home | SequenceCutter | Blast | Download |