BAC Information

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BAC

Clone NameB6Ng01-316F01
Chromosome6 (Build37)
Map Location 49,551,146 - 49,682,946
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F01.bB6Ng01-316F01.g
ACCGA106741GA106742
length1,0401,134
definitionB6Ng01-316F01.b B6Ng01-316F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,681,919 - 49,682,946)(49,551,146 - 49,552,256)
sequence
gaattcacagaggggcaagtattctctctggctgtcactggacttcagct
tttctccgtctccaacatgagattcctagggaaattccaattccttgagg
cccattacattaatattctaatagacaatggaaagagcactatcatctca
ttagaatatctttgctcttgccaggaagattacagcattatgaaataaat
agcatcacctacgagttcaagcctggttcaacatgtaaaattaagcatta
ttcataggattaatagactaaaggagaaagaacaaccatcagatcaatag
atgtagagaaatatttgataaaatttcaaaatccatccctggcaaaggtt
ctttttttaaaaaaataaaaaaatatttttaaatataaaagaacttctct
tcgtgaagatatgagactgtggaaaggtatcagccatgggaagatacagg
ccacagcaacgtataaaccatgagaattctcatttgctgagggtagaaat
acaaattcacagacaccctaagtttctttttgtttttaaataaattaatt
tttctttatgtggttgagtgttttgtctaaatgtgttgctgtgtaccatg
tgagaacctgtgtccaaagaggccataaaagagcatcagataccctgaaa
caggagttacagattgtgttaagccatcatgtggatgctgaaaattaaat
cttggtcctctgctagagcagcaagtctttcttatttatttatttattta
tttatttatttatttgctattttatttacttacatttcaaatgttattcc
tttttccagtttctcctccagaaatcccctattccatcctccctcccctt
gcttctatgagggtgctcacccacgcacccaaccactcctacctccctgc
cctggcattccccaacagtggggcatcaagcctttacaggacgaagagcc
tcttcttcctattcatgtccaacaaggccatcctctgctacacatgcagc
tgggagtcgtgagtcccttcattgtgtactctttggttgg
gaattcatgtgtgtatgtcacagtgtgcatatggtcaaccttgggtatct
gtcttcaccttccacttgatttgagacagtctcgtgccacttcattggat
tttatgtgtattctggggacttgaccttggatcctcaactttcatgcttt
ccccactgagccttctctactgccaagatgccttttaatttaagttataa
gaatctttcaagtaggacctcttttatttatccaaagatttgttttcttc
ttagttaatggttggcaatattgtgaaattaagaatctaaaaactcaaat
ttagaagtgaaaaagagagagagagagagagagagagagagagagagaga
gagagagagagagagagacagagacctaggcctaaactaagaatagtgat
attttaatgtatatttaaattacattttaaaatatatatgtgtgtacaca
cacatgcacatgtctgctgtggcacgtgtggaggtcagaaggaaacttgc
gtgagctgattatctcttttcatctattaggtcttggggatcaaacttct
gctgtcaggcttgttggcaagtacctttacacaatgagctatctcactgg
cccaagagtaatagtattttaaagttatatttacagtttaagagtaaagg
aaagagaagttattgaaaaaggttagttcagcctgtattttaatgcaact
taaacagaaaactaaacaattgaaaatgtctaaccctagtcgttgacatt
gagaagacaggccagtacgagaggcccaagggagcatgctgatgggttag
gaagcatgcttgatgggttaggaagcattcttactagacactgaatccac
caagccttcagtttgcactttcttaaacctccagaactacgactaaataa
ttcaccttatttacaagttatatacctttatgttcccactgtagtttttc
cgccatagatcttcatttgtacaggcccaaggtacatcttgaacttgaga
tccctcctgcctcagtttgtccaaaatactaaagatcacaggcctgcacc
atcttgtgccttggtcctagaagtcttgtggggatccatcttaattccaa
acctaaacttcaactatcaggtctcaaagtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49681919_49682946
seq2: B6Ng01-316F01.b_55_1085 (reverse)

seq1  CCAACCAAAGAGTACAC-ATGAAGGGACTCACGACT-CCAGCTGCATGTG  48
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  CCAACCAAAGAGTACACAATGAAGGGACTCACGACTCCCAGCTGCATGTG  50

seq1  TAGCAGAGGATGGCCTTGTTGGACATGAATAGG-AGGAGAGGCTCTTCGT  97
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TAGCAGAGGATGGCCTTGTTGGACATGAATAGGAAGAAGAGGCTCTTCGT  100

seq1  CCTGTAAAGGCTTGATGCCCCACTGTTGGGGAATGCCAGGGCAGGGAGGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAAGGCTTGATGCCCCACTGTTGGGGAATGCCAGGGCAGGGAGGT  150

seq1  AGGAGTGGTTGGGTGCGTGGGTGAGCACCCTCATAGAAGCAAGGGGAGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGTTGGGTGCGTGGGTGAGCACCCTCATAGAAGCAAGGGGAGGG  200

seq1  AGGATGGAATAGGGGATTTCTGGAGGAGAAACTGGAAAAAGGAATAACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAATAGGGGATTTCTGGAGGAGAAACTGGAAAAAGGAATAACAT  250

seq1  TTGAAATGTAAGTAAATAAAATAGCAAATAAATAAATAAATAAATAAATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTAAGTAAATAAAATAGCAAATAAATAAATAAATAAATAAATA  300

seq1  AATAAATAAGAAAGACTTGCTGCTCTAGCAGAGGACCAAGATTTAATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGAAAGACTTGCTGCTCTAGCAGAGGACCAAGATTTAATTTT  350

seq1  CAGCATCCACATGATGGCTTAACACAATCTGTAACTCCTGTTTCAGGGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCACATGATGGCTTAACACAATCTGTAACTCCTGTTTCAGGGTA  400

seq1  TCTGATGCTCTTTTATGGCCTCTTTGGACACAGGTTCTCACATGGTACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCTCTTTTATGGCCTCTTTGGACACAGGTTCTCACATGGTACAC  450

seq1  AGCAACACATTTAGACAAAACACTCAACCACATAAAGAAAAATTAATTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACATTTAGACAAAACACTCAACCACATAAAGAAAAATTAATTTA  500

seq1  TTTAAAAACAAAAAGAAACTTAGGGTGTCTGTGAATTTGTATTTCTACCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACAAAAAGAAACTTAGGGTGTCTGTGAATTTGTATTTCTACCC  550

seq1  TCAGCAAATGAGAATTCTCATGGTTTATACGTTGCTGTGGCCTGTATCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATGAGAATTCTCATGGTTTATACGTTGCTGTGGCCTGTATCTT  600

seq1  CCCATGGCTGATACCTTTCCACAGTCTCATATCTTCACGAAGAGAAGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCTGATACCTTTCCACAGTCTCATATCTTCACGAAGAGAAGTTC  650

seq1  TTTTATATTTAAAAATATTTTTTTATTTTTTTAAAAAAAGAACCTTTGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTAAAAATATTTTTTTATTTTTTTAAAAAAAGAACCTTTGCC  700

seq1  AGGGATGGATTTTGAAATTTTATCAAATATTTCTCTACATCTATTGATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGATTTTGAAATTTTATCAAATATTTCTCTACATCTATTGATCT  750

seq1  GATGGTTGTTCTTTCTCCTTTAGTCTATTAATCCTATGAATAATGCTTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTTCTTTCTCCTTTAGTCTATTAATCCTATGAATAATGCTTAA  800

seq1  TTTTACATGTTGAACCAGGCTTGAACTCGTAGGTGATGCTATTTATTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGTTGAACCAGGCTTGAACTCGTAGGTGATGCTATTTATTTCA  850

seq1  TAATGCTGTAATCTTCCTGGCAAGAGCAAAGATATTCTAATGAGATGATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTAATCTTCCTGGCAAGAGCAAAGATATTCTAATGAGATGATA  900

seq1  GTGCTCTTTCCATTGTCTATTAGAATATTAATGTAATGGGCCTCAAGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTTCCATTGTCTATTAGAATATTAATGTAATGGGCCTCAAGGAA  950

seq1  TTGGAATTTCCCTAGGAATCTCATGTTGGAGACGGAGAAAAGCTGAAGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTTCCCTAGGAATCTCATGTTGGAGACGGAGAAAAGCTGAAGTC  1000

seq1  CAGTGACAGCCAGAGAGAATACTTGCCCCTC  1028
      |||||||||||||||||||||||||||||||
seq2  CAGTGACAGCCAGAGAGAATACTTGCCCCTC  1031

seq1: chr6_49551146_49552256
seq2: B6Ng01-316F01.g_68_1201

seq1  GAATTCATGTGTGTATGTCACAGTGTGCATATGGTCAACCTTGGGTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTGTATGTCACAGTGTGCATATGGTCAACCTTGGGTATCT  50

seq1  GTCTTCACCTTCCACTTGATTTGAGACAGTCTCGTGCCACTTCATTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACCTTCCACTTGATTTGAGACAGTCTCGTGCCACTTCATTGGAT  100

seq1  TTTATGTGTATTCTGGGGACTTGACCTTGGATCCTCAACTTTCATGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATTCTGGGGACTTGACCTTGGATCCTCAACTTTCATGCTTT  150

seq1  CCCCACTGAGCCTTCTCTACTGCCAAGATGCCTTTTAATTTAAGTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGAGCCTTCTCTACTGCCAAGATGCCTTTTAATTTAAGTTATAA  200

seq1  GAATCTTTCAAGTAGGACCTCTTTTATTTATCCAAAGATTTGTTTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCAAGTAGGACCTCTTTTATTTATCCAAAGATTTGTTTTCTTC  250

seq1  TTAGTTAATGGTTGGCAATATTGTGAAATTAAGAATCTAAAAACTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATGGTTGGCAATATTGTGAAATTAAGAATCTAAAAACTCAAAT  300

seq1  TTAGAAGTGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGAGACAGAGACCTAGGCCTAAACTAAGAATAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGACAGAGACCTAGGCCTAAACTAAGAATAGTGAT  400

seq1  ATTTTAATGTATATTTAAATTACATTTTAAAATATATATGTGTGTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGTATATTTAAATTACATTTTAAAATATATATGTGTGTACACA  450

seq1  CACATGCACATGTCTGCTGTGGCACGTGTGGAGGTCAGAAGGAAACTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACATGTCTGCTGTGGCACGTGTGGAGGTCAGAAGGAAACTTGC  500

seq1  GTGAGCTGATTATCTCTTTTCATCTATTAGGTCTTGGGGATCAAACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGATTATCTCTTTTCATCTATTAGGTCTTGGGGATCAAACTTCT  550

seq1  GCTGTCAGGCTTGTTGGCAAGTACCTTTACACAATGAGCTATCTCACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGGCTTGTTGGCAAGTACCTTTACACAATGAGCTATCTCACTGG  600

seq1  CCCAAGAGTAATAGTATTTTAAAGTTATATTTACAGTTTAAGAGTAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGTAATAGTATTTTAAAGTTATATTTACAGTTTAAGAGTAAAGG  650

seq1  AAAGAGAAGTTATTGAAAAAGGTTAGTTCAGCCTGTATTTTAATGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGTTATTGAAAAAGGTTAGTTCAGCCTGTATTTTAATGCAACT  700

seq1  TAAACAGAAAACTAAACAATTGAAAATGTCTAACCCTAGTCGTTGACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAAACTAAACAATTGAAAATGTCTAACCCTAGTCGTTGACATT  750

seq1  GAGAAGACAGGCCAGTACGAGAGGCCCAAGGGAGCATGCTGATGGGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGGCCAGTACGAGAGGCCCAAGGGAGCATGCTGATGGGTTAG  800

seq1  GAAGCATGC-TGATGGGTTAGGAAGCATTCTTACTAGACACTGAATCCAC  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGCTTGATGGGTTAGGAAGCATTCTTACTAGACACTGAATCCAC  850

seq1  CAAAGCCTTCAGTTTGCAC-TTCTT-AACCTCCAGAACTACGACTAAATA  897
      | ||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  C-AAGCCTTCAGTTTGCACTTTCTTAAACCTCCAGAACTACGACTAAATA  899

seq1  ATTCACCTTATTTACAAGTTATATACC-TTATGTTCCCACTGTTAGTTTT  946
      ||||||||||||||||||||||||||| |||||||||||||||   ||||
seq2  ATTCACCTTATTTACAAGTTATATACCTTTATGTTCCCACTGTAGTTTTT  949

seq1  CCGCCATAGATC-TCA-TTGTACAG--CCCAGGTACATCTTGAACTTGAG  992
      |||||||||||| ||| ||||||||  || ||||||||||||||||||||
seq2  CCGCCATAGATCTTCATTTGTACAGGCCCAAGGTACATCTTGAACTTGAG  999

seq1  AT-CCTCCTGCCTCAG-TTGTCC-AAATACT-AAGATCACAGGCCTGCAC  1038
      || ||||||||||||| |||||| ||||||| ||||||||||||||||||
seq2  ATCCCTCCTGCCTCAGTTTGTCCAAAATACTAAAGATCACAGGCCTGCAC  1049

seq1  CA--CTGTGCCT--GGCCTAG-AGTCTTGTGGGG-TCCA-CTTAAATCC-  1080
      ||   |||||||  | ||||| |||||||||||| |||| ||||| ||| 
seq2  CATCTTGTGCCTTGGTCCTAGAAGTCTTGTGGGGATCCATCTTAATTCCA  1099

seq1  AACATAA--CTCAAACATCAGG--TCAAAGTGGGT  1111
      ||| |||   ||||  ||||||  |||||||||||
seq2  AACCTAAACTTCAACTATCAGGTCTCAAAGTGGGT  1134