BAC Information

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BAC

Clone NameB6Ng01-316L03
Chromosome6 (Build37)
Map Location 13,131,708 - 13,132,861
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b
Downstream geneGm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L03.bB6Ng01-316L03.g
ACCGA107028GA107029
length1,157694
definitionB6Ng01-316L03.b B6Ng01-316L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccagggctactcagagaaaccttgtcttgcaaaaac
aaacaaacaaacaaacaaaattaagatatttaaactaaaaaaatagtctc
agtatataataaacattcacaaaatgttgtatataaaagatgcagaatca
aatttattcatcacttagggttaacctcttcatagagggctagaactcat
atcttactgtctagttattggctgcagtctgatttcacagagaaaaacaa
gagatccaacatgacttaagcagggctatcatgacaaccttgtcagggta
tttttgtcatccttcctctgctagagaaactgacagacctgctgtaacag
actgttcctctataactatagatatctgcacaactgagatgctatcaatc
aaaagtcttcaaaatgaggttatactttgtgccatataaactggagtgat
atctctttccttctaacctgcaatgatgaagcaatatcaagttgcatgac
cagtgctatgtttgaaaaccattgtgccatcaaaatgcagttttatacat
ttgaatatacatatgaattcagatgccaacaaatacacccttcaagtttt
ctatatagttatcagtacccagaaaatcattctacctctttattttcaca
gactaagacattttacagcactactagatagtactcaaagtatgggggag
gggtggcgaagaaacttttacatagaaaaatctatttaccatgtgacaag
tatgcactccattactttcctcttgctctgaaatacattttgtggtgaat
gagttatatattactaaccttgacaacttttttggatcaaatctgtcaat
aatgtatgctttggaagaagggttgattttgttttttaattaccaaacta
tggtgtatacttttctattattttgaataatataaatatgaaaacttact
tttcaacatagttttctaattgtttatctgattgtatggggtatatatat
tttaaattttcttcattgactatatacaattcagtattataaaatgcaca
aaaaccacttccacagttcagacctaataattgacctttttattactact
tcagttataacggcatgtaagtgggtgcctgtaacaagtgttctacacac
agcagtc

gaattcaataaaaccccatggggtgtaacctctgttccagttttgcctga
gttgttgacagcattcatctcaaaataagatgaattttccattccaaaat
cattgggtcgtagagggaagaacaacaaaaatctctccaatcttaggggg
atattttagttggcaatatgactttgtaggaaagattttgttcagggtgc
atggatgccgtcttccttcactgcctgcctgagttcttttaagtctgagg
cttggagtgggtaccaattaaggggtttgttttgactgggttgatattac
ccagaatgcttgtgcagtttaggttttcagttcgtaccagactcctgagt
agcatgggaggtggggttagtttttgcaagagagtcttgaacattacaaa
gttgttgggtggtacaggatctggagtaagggactatggagttaggtggg
gctttgggttttgaaggtctcctgcttttacagcttgtatctgcaggcat
gggtggacagactttatttctctcatgagttgggtaagggctgtgagatc
tgaaatcgagtggtttttaggaccttgatctttgggttcatctgactgag
atgactcatgagctgtgttgctatcagtatgtcttattttagataatcct
atgttttgccatattgactttaatactagcttaaaatatcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13131708_13132861
seq2: B6Ng01-316L03.b_48_1204 (reverse)

seq1  GACTGCCTGTGTGTAG-ACACTTGTTTCAAGCACCCACTTAC-TGCCGTT  48
      ||||| |||||||||| ||||||||| || |||||||||||| |||||||
seq2  GACTG-CTGTGTGTAGAACACTTGTTACAGGCACCCACTTACATGCCGTT  49

seq1  AT-ACTGAAGTAGTAATAAAAA-GTCAATTAATTAGTTCTGAATTGTGGA  96
      || ||||||||||||||||||| ||||||| ||||| |||||| ||||||
seq2  ATAACTGAAGTAGTAATAAAAAGGTCAATT-ATTAGGTCTGAACTGTGGA  98

seq1  AGT-GTTTTTGTGCATTTTATAATTACTGAATTGTATATAGTCAATGAAG  145
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGGTTTTTGTGCATTTTATAA-TACTGAATTGTATATAGTCAATGAAG  147

seq1  AAAATTTAAAATATATATACCCCATACAATCAGATAAACAATTAGAAAAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAATATATATACCCCATACAATCAGATAAACAATTAGAAAAC  197

seq1  TATGTTG-AAAGTAAGTTTTCATATTTATATTATTCAAAATAATAGAAAA  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAAAAGTAAGTTTTCATATTTATATTATTCAAAATAATAGAAAA  247

seq1  GTATACACCATAGTTTGGTAATTAAAAAACAAAATCAACCCTTCTTCCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACCATAGTTTGGTAATTAAAAAACAAAATCAACCCTTCTTCCAA  297

seq1  AGCATACATTATTGACAGATTTGATCCAAAAAAGTTGTCAAGGTTAGTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACATTATTGACAGATTTGATCCAAAAAAGTTGTCAAGGTTAGTAA  347

seq1  TATATAACTCATTCACCACAAAATGTATTTCAGAGCAAGAGGAAAGTAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCATTCACCACAAAATGTATTTCAGAGCAAGAGGAAAGTAAT  397

seq1  GGAGTGCATACTTGTCACATGGTAAATAGATTTTTCTATGTAAAAGTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCATACTTGTCACATGGTAAATAGATTTTTCTATGTAAAAGTTTC  447

seq1  TTCGCCACCCCTCCCCCATACTTTGAGTACTATCTAGTAGTGCTGTAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCACCCCTCCCCCATACTTTGAGTACTATCTAGTAGTGCTGTAAAA  497

seq1  TGTCTTAGTCTGTGAAAATAAAGAGGTAGAATGATTTTCTGGGTACTGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGTCTGTGAAAATAAAGAGGTAGAATGATTTTCTGGGTACTGAT  547

seq1  AACTATATAGAAAACTTGAAGGGTGTATTTGTTGGCATCTGAATTCATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATAGAAAACTTGAAGGGTGTATTTGTTGGCATCTGAATTCATAT  597

seq1  GTATATTCAAATGTATAAAACTGCATTTTGATGGCACAATGGTTTTCAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCAAATGTATAAAACTGCATTTTGATGGCACAATGGTTTTCAAA  647

seq1  CATAGCACTGGTCATGCAACTTGATATTGCTTCATCATTGCAGGTTAGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACTGGTCATGCAACTTGATATTGCTTCATCATTGCAGGTTAGAA  697

seq1  GGAAAGAGATATCACTCCAGTTTATATGGCACAAAGTATAACCTCATTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGATATCACTCCAGTTTATATGGCACAAAGTATAACCTCATTTT  747

seq1  GAAGACTTTTGATTGATAGCATCTCAGTTGTGCAGATATCTATAGTTATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTTGATTGATAGCATCTCAGTTGTGCAGATATCTATAGTTATA  797

seq1  GAGGAACAGTCTGTTACAGCAGGTCTGTCAGTTTCTCTAGCAGAGGAAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAGTCTGTTACAGCAGGTCTGTCAGTTTCTCTAGCAGAGGAAGG  847

seq1  ATGACAAAAATACCCTGACAAGGTTGTCATGATAGCCCTGCTTAAGTCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAATACCCTGACAAGGTTGTCATGATAGCCCTGCTTAAGTCAT  897

seq1  GTTGGATCTCTTGTTTTTCTCTGTGAAATCAGACTGCAGCCAATAACTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCTCTTGTTTTTCTCTGTGAAATCAGACTGCAGCCAATAACTAG  947

seq1  ACAGTAAGATATGAGTTCTAGCCCTCTATGAAGAGGTTAACCCTAAGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGATATGAGTTCTAGCCCTCTATGAAGAGGTTAACCCTAAGTGA  997

seq1  TGAATAAATTTGATTCTGCATCTTTTATATACAACATTTTGTGAATGTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATTTGATTCTGCATCTTTTATATACAACATTTTGTGAATGTTT  1047

seq1  ATTATATACTGAGACTATTTTTTTAGTTTAAATATCTTAATTTTGTTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATACTGAGACTATTTTTTTAGTTTAAATATCTTAATTTTGTTTGT  1097

seq1  TTGTTTGTTTGTTTTTGCAAGACAAGGTTTCTCTGAGTAGCCCTGGCTGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTTGCAAGACAAGGTTTCTCTGAGTAGCCCTGGCTGT  1147

seq1  CCTGGAATTC  1154
      ||||||||||
seq2  CCTGGAATTC  1157


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