BAC Information

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BAC

Clone NameB6Ng01-317B22
Chromosome6 (Build37)
Map Location 68,589,934 - 68,590,340
singlet/doubletsinglet
Overlap geneIgk
Upstream geneEG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96
Downstream geneIgkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B22.bB6Ng01-317B22.g
ACCGA107344GA107345
length1,012401
definitionB6Ng01-317B22.b B6Ng01-317B22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtactccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattggatattagatccc
tatcaaatttaggattggtaaaagtcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtattttgccttacagaagctttgcaatttcat
aaggtcccatttgtcaattcttttttttaatattttttattacatatttt
cctcaattacatttccaatgctatcccaacagtcccccatagcatccccc
acacttccccacccacccattcctatttttttggccctggcgttcccctg
tactggggcatatacagtttgcatgtccaatgggcctctctttccagtga
tggccgactaggccatcttttgatacatatgcagctagagccaagagctc
cggggtactggttagttcataatgttattccacctatagggttgcagatc
cctttagctccttgggtactttctctagctcctccattgggagccctgtg
atccatccaatagctgattgtgagcatccacttctgtgtttgctaggacc
cggcatagtctcacaagtgacagctatatctgggccctttcagcaaattc
ttgctagtgtatgcaatggtgttagtgtttggaagctgattatggggtgg
atccctggatatggcagtctctagatggtccatcctttcgtctcagctcc
aaactttgtctctgtaactccttccatgggtgttttgttcccatttctaa
ggaggggcgtagtgtccacacttcagtcttcattcttcttcagtttcatg
tgtttagcaaattgtatcttatatcttgggtatcctaggttttgggctaa
tatccacttatcagtgagtacatgtcaattcttgatcttacagcaaaagc
cattgctgttctgtttaggaatttttcacctgtgcccatatctttgaagc
ttttcccccact
actctagagacaacactgttgtttccatggcaatggcagattcatctgca
cacctagccttctgctccttttattcagagcaaaatcccattaagcagca
tccagcaatattagcaaggcagagacatttaaaaagtgatctggtagcca
ccattctgctcacaggccttttataagctctgtaatggatctgtaagtcc
ctgggggcctggagactaaaccaccaaccaaagagtacacatggtgggac
tcatggctccagctgcatatttagcagaggatggcctagttggtcatcaa
tgggaggagaggccgttggtcctatgaaggctctatgtcctagtgtaggg
gaatgccagggccctgaagtaggagtgggtgggttgttaagctgggggag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68589934_68590340
seq2: B6Ng01-317B22.g_67_473

seq1  GAATTCACTCTAGAGACAACACTGTTGTTTCCATGGCAATGGCAGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGAGACAACACTGTTGTTTCCATGGCAATGGCAGATTCA  50

seq1  TCTGCACACCTAGCCTTCTGCTCCTTTTATTCAGAGCAAAATCCCATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACACCTAGCCTTCTGCTCCTTTTATTCAGAGCAAAATCCCATTAA  100

seq1  GCAGCATCCAGCAATATTAGCAAGGCAGAGACATTTAAAAAGTGATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCAGCAATATTAGCAAGGCAGAGACATTTAAAAAGTGATCTGG  150

seq1  TAGCCACCATTCTGCTCACAGGCCTTTTATAAGCTCTGTAATGGATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCATTCTGCTCACAGGCCTTTTATAAGCTCTGTAATGGATCTGT  200

seq1  AAGTCCCTGGGGGCCTGGAGACTAAACCACCAACCAAAGAGTACACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGGGGCCTGGAGACTAAACCACCAACCAAAGAGTACACATGG  250

seq1  TGGGACTCATGGCTCCAGCTGCATATTTAGCAGAGGATGGCCTAGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCATGGCTCCAGCTGCATATTTAGCAGAGGATGGCCTAGTTGGT  300

seq1  CATCAATGGGAGGAGAGGCCGTTGGTCCTATGAAGGCTCTATGTCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGGGAGGAGAGGCCGTTGGTCCTATGAAGGCTCTATGTCCTAGT  350

seq1  GTAGGGGAATGCCAGGGCCCTGAAGTAGGAGTGGGTGGGTTGTTAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAATGCCAGGGCCCTGAAGTAGGAGTGGGTGGGTTGTTAAGCTG  400

seq1  GGGGAGG  407
      |||||||
seq2  GGGGAGG  407