BAC Information

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BAC

Clone NameB6Ng01-317F02
Chromosome6 (Build37)
Map Location 15,303,777 - 15,418,601
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F02.bB6Ng01-317F02.g
ACCGA107493GA107494
length1,0151,122
definitionB6Ng01-317F02.b B6Ng01-317F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,303,777 - 15,304,621)(15,417,481 - 15,418,601)
sequence
gaattcagtgctccaatcagcccaaagatctttttatgagaaactttcta
gttcaattttgtcaatacatatgggactttttggatttactccaactttt
gataaagtattttttcaggattttgaccaacttacctagtatgaaattca
ctgaaattaattttcataacattcttttgttttaatacctgtaccatgac
tgctagctttttttcaaattttcagtcctaatactggttatttcattttt
ataaaaggtcaatattgacataattaccacaattcttctttcaaagttta
tcattttacttatttttctactacattctttaaaactcatgaatagacct
ttaaaataatttatatccacttttagcaaaaccattttaggtatactagg
aaagaaataaagcaggcagaaagtagagttttagatacatattctacctg
gcttcctaatttatttttgagttaacttcttgctttgatgtgatatattt
gttacagctgatgaaccaatattaatacactgttattaagtgaagcctga
agggtggattaggatttgtgccgttttttacagttctttgcattttgaca
aattttaatgccttgtgttcattataatatgaaatgtagcagaaactgaa
acatctcctgtttcccatatttatccaccctctattttccaatcccaaga
agccactgatcttttcaacatagcaattgttccatctgttctagaatgcc
atatggttaaaaccatacagtgtggccttttcagcacgacttcttttcct
taataatatgcctttggggtttctctatctattcatggcataaccgttat
ttctttttaccttttcattcagaaaaaagaaagaaagaaagaaaaactca
cattgtatgtatatcccagagttgattgtctcactcactgaagaacatct
tgattgcttccaagttaactaattattaataaagctgctataccacagca
tgcagtctagtgctg

gaattccagagatgaaggctcttcacagagaatgctcagccttcagacct
gtgtagttctaaatcagagggcttagcacctccaagctctccagctgctg
cgagggcaaacccaggaaagaggtggccattggatataacctgaatcccc
tctctactgcctttccgtcaaccctgaaacagaatgctgttgaggtctgc
taccttgattccccgtgaaagcaaagagacaactcatgaggtacggaagc
ctggagggaacaaaggcaagtgtggatgtgtgtgagctcatactttggca
tgatgaaaagtagttactcttcaaaaggtctgctctgtggcagaggggct
cgttactgagagcagagccgcactgcccatacaaaggcaggtgggaaggc
aaggggcttactgaagtcagaacacagacaatatggaagcaaagatcgtt
gaatcttaaaatctgatggctatatgcgaagccatttaaaacagtggggg
agagcaaagggcaacgaagagacgaggctgggagatgtactcgcctgtgt
actgcggtcaggtaacttttgttttgtggggatgttggttgaaattggct
tttatcgttaccagtaaaaatgaaaataaacctatgtaggcaaaataata
agctcttccctgggatgcgtacaccttaattccaggaaccagtcaatacg
ttgctacaaggcaaaggagagttaaagaggaggaagaggaggaaacaagt
tggttgatcacctagacctaacatagagaggttatttttgatgatccata
gaggataatcagcattatctcaaaagtcacaaagattcaatgccatggtg
ctgctttaaagatgggcaaaaggggaataatcccagcacttgagaatgag
aggcatctagaagcagaagcagtaaaggatgctggtctccagagaataaa
cagcagtttgtttgacactctaagttagtcactgagactttggaataaaa
gctggatgggagatgaatgcgatacttttcctcactgctgagaatgaact
aacggaggggacttgttagcatagctcagggaatacagttccattcccaa
gggaatggagaagggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15303777_15304621
seq2: B6Ng01-317F02.b_45_889

seq1  GAATTCAGTGCTCCAATCAGCCCAAAGATCTTTTTATGAGAAACTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTCCAATCAGCCCAAAGATCTTTTTATGAGAAACTTTCTA  50

seq1  GTTCAATTTTGTCAATACATATGGGACTTTTTGGATTTACTCCAACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTTTGTCAATACATATGGGACTTTTTGGATTTACTCCAACTTTT  100

seq1  GATAAAGTATTTTTTCAGGATTTTGACCAACTTACCTAGTATGAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTATTTTTTCAGGATTTTGACCAACTTACCTAGTATGAAATTCA  150

seq1  CTGAAATTAATTTTCATAACATTCTTTTGTTTTAATACCTGTACCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATTTTCATAACATTCTTTTGTTTTAATACCTGTACCATGAC  200

seq1  TGCTAGCTTTTTTTCAAATTTTCAGTCCTAATACTGGTTATTTCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTTTTTTTCAAATTTTCAGTCCTAATACTGGTTATTTCATTTTT  250

seq1  ATAAAAGGTCAATATTGACATAATTACCACAATTCTTCTTTCAAAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTCAATATTGACATAATTACCACAATTCTTCTTTCAAAGTTTA  300

seq1  TCATTTTACTTATTTTTCTACTACATTCTTTAAAACTCATGAATAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTACTTATTTTTCTACTACATTCTTTAAAACTCATGAATAGACCT  350

seq1  TTAAAATAATTTATATCCACTTTTAGCAAAACCATTTTAGGTATACTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTTATATCCACTTTTAGCAAAACCATTTTAGGTATACTAGG  400

seq1  AAAGAAATAAAGCAGGCAGAAAGTAGAGTTTTAGATACATATTCTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAAGCAGGCAGAAAGTAGAGTTTTAGATACATATTCTACCTG  450

seq1  GCTTCCTAATTTATTTTTGAGTTAACTTCTTGCTTTGATGTGATATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAATTTATTTTTGAGTTAACTTCTTGCTTTGATGTGATATATTT  500

seq1  GTTACAGCTGATGAACCAATATTAATACACTGTTATTAAGTGAAGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCTGATGAACCAATATTAATACACTGTTATTAAGTGAAGCCTGA  550

seq1  AGGGTGGATTAGGATTTGTGCCGTTTTTTACAGTTCTTTGCATTTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGATTAGGATTTGTGCCGTTTTTTACAGTTCTTTGCATTTTGACA  600

seq1  AATTTTAATGCCTTGTGTTCATTATAATATGAAATGTAGCAGAAACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGCCTTGTGTTCATTATAATATGAAATGTAGCAGAAACTGAA  650

seq1  ACATCTCCTGTTTCCCATATTTATCCACCCTCTATTTTCCAATCCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCTGTTTCCCATATTTATCCACCCTCTATTTTCCAATCCCAAGA  700

seq1  AGCCACTGATCTTTTCAACATAGCAATTGTTCCATCTGTTCTAGAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGATCTTTTCAACATAGCAATTGTTCCATCTGTTCTAGAATGCC  750

seq1  ATATGGTTAAAACCATACAGTGTGGCCTTTTCAGCACGACTTCTTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTAAAACCATACAGTGTGGCCTTTTCAGCACGACTTCTTTTCCT  800

seq1  TAATAATATGCCTTTGGGGTTTCTCTATCTATTCATGGCATAACC  845
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATGCCTTTGGGGTTTCTCTATCTATTCATGGCATAACC  845


seq1: chr6_15417481_15418601
seq2: B6Ng01-317F02.g_63_1184 (reverse)

seq1  -CCCCCCCCC--CTCCCATCCCTTGGGAAATGGGACTGTA-TCCCTGAGC  46
       |||||||||  ||||  ||||||||| ||||| |||||| |||||||||
seq2  CCCCCCCCCCTTCTCCATTCCCTTGGG-AATGGAACTGTATTCCCTGAGC  49

seq1  TATGCT-ACAAGTCCCCTTCTGTTAGGTTTCA-TCTCAGCAGTGA-GAAA  93
      |||||| |||||||||| || |||||  |||| |||||||||||| ||||
seq2  TATGCTAACAAGTCCCC-TCCGTTAG--TTCATTCTCAGCAGTGAGGAAA  96

seq1  AGTATCGCATCCATTCTTCCCATCCAGCTTTTATTCCAAAGTCTCAGTGA  143
      |||||||||| |||   |||||||||||||||||||||||||||||||| 
seq2  AGTATCGCATTCAT--CTCCCATCCAGCTTTTATTCCAAAGTCTCAGTG-  143

seq1  ACTAAACTTAGAGTGTCAAACAAACTGCTGTTTATCTCT-TGGAGACCAG  192
      ||| ||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  ACT-AACTTAGAGTGTCAAACAAACTGCTGTTTAT-TCTCTGGAGACCAG  191

seq1  CATCC-TTACTGCTTCTGCTTCTAGATGCCTCTCATTCTCAAGTGCTGGG  241
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTACTGCTTCTGCTTCTAGATGCCTCTCATTCTCAAGTGCTGGG  241

seq1  ATTATTCCCC-TTTGCCCATCTTTAAAGCAGCACCATGGCATTGAATCTT  290
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCCCTTTTGCCCATCTTTAAAGCAGCACCATGGCATTGAATCTT  291

seq1  TGTGACTTTTGAGATAATGCTGATTATCCTCTATGGATCATCAAAAATAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTTGAGATAATGCTGATTATCCTCTATGGATCATCAAAAATAA  341

seq1  CCTCTCTATGTTAGGTCTAGGTGATCAACCAACTTGTTTCCTCCTCTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTATGTTAGGTCTAGGTGATCAACCAACTTGTTTCCTCCTCTTCC  391

seq1  TCCTCTTTAACTCTCCTTTGCCTTGTAGCAACGTATTGACTGGTTCCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTAACTCTCCTTTGCCTTGTAGCAACGTATTGACTGGTTCCTGG  441

seq1  AATTAAGGTGTACGCATCCCAGGGAAGAGCTTATTATTTTGCCTACATAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGTGTACGCATCCCAGGGAAGAGCTTATTATTTTGCCTACATAG  491

seq1  GTTTATTTTCATTTTTACTGGTAACGATAAAAGCCAATTTCAACCAACAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTCATTTTTACTGGTAACGATAAAAGCCAATTTCAACCAACAT  541

seq1  CCCCACAAAACAAAAGTTACCTGACCGCAGTACACAGGCGAGTACATCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAAACAAAAGTTACCTGACCGCAGTACACAGGCGAGTACATCTC  591

seq1  CCAGCCTCGTCTCTTCGTTGCCCTTTGCTCTCCCCCACTGTTTTAAATGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCGTCTCTTCGTTGCCCTTTGCTCTCCCCCACTGTTTTAAATGG  641

seq1  CTTCGCATATAGCCATCAGATTTTAAGATTCAACGATCTTTGCTTCCATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCATATAGCCATCAGATTTTAAGATTCAACGATCTTTGCTTCCATA  691

seq1  TTGTCTGTGTTCTGACTTCAGTAAGCCCCTTGCCTTCCCACCTGCCTTTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGTTCTGACTTCAGTAAGCCCCTTGCCTTCCCACCTGCCTTTG  741

seq1  TATGGGCAGTGCGGCTCTGCTCTCAGTAACGAGCCCCTCTGCCACAGAGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCAGTGCGGCTCTGCTCTCAGTAACGAGCCCCTCTGCCACAGAGC  791

seq1  AGACCTTTTGAAGAGTAACTACTTTTCATCATGCCAAAGTATGAGCTCAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTTGAAGAGTAACTACTTTTCATCATGCCAAAGTATGAGCTCAC  841

seq1  ACACATCCACACTTGCCTTTGTTCCCTCCAGGCTTCCGTACCTCATGAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCACACTTGCCTTTGTTCCCTCCAGGCTTCCGTACCTCATGAGT  891

seq1  TGTCTCTTTGCTTTCACGGGGAATCAAGGTAGCAGACCTCAACAGCATTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGCTTTCACGGGGAATCAAGGTAGCAGACCTCAACAGCATTC  941

seq1  TGTTTCAGGGTTGACGGAAAGGCAGTAGAGAGGGGATTCAGGTTATATCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGGGTTGACGGAAAGGCAGTAGAGAGGGGATTCAGGTTATATCC  991

seq1  AATGGCCACCTCTTTCCTGGGTTTGCCCTCGCAGCAGCTGGAGAGCTTGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCACCTCTTTCCTGGGTTTGCCCTCGCAGCAGCTGGAGAGCTTGG  1041

seq1  AGGTGCTAAGCCCTCTGATTTAGAACTACACAGGTCTGAAGGCTGAGCAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTAAGCCCTCTGATTTAGAACTACACAGGTCTGAAGGCTGAGCAT  1091

seq1  TCTCTGTGAAGAGCCTTCATCTCTGGAATTC  1121
      |||||||||||||||||||||||||||||||
seq2  TCTCTGTGAAGAGCCTTCATCTCTGGAATTC  1122


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