BAC Information

Click to search

BAC

Clone NameB6Ng01-317I09
Chromosome6 (Build37)
Map Location 35,799,072 - 35,924,084
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317I09.bB6Ng01-317I09.g
ACCGA107645GA107646
length1,1461,145
definitionB6Ng01-317I09.b B6Ng01-317I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,922,934 - 35,924,084)(35,799,072 - 35,800,224)
sequence
gaattctattaaaagtctctgcttccattgtgcttggacctgatcatgct
aggacctaatcaccttccaaggtctcactttctatttcatcatctagtgc
actaggatattaacataggaatttgtaagagagacagggtcagacattgg
caagctaaggaggcttgtatccaacattgttcatatctttctggtagatc
taattgcttctctccaaaattcaagatgacagatttcattatcttagcaa
ttctctctttcagagaaatatttaatattcactcttcatatgaaattaga
ctctagtctcctcttcacctgctttcagaatcagaaagaatttctccttt
acttcatatggagagacagcctgttatagaggacactggaaggaaagttt
ctgttgtgttgttaactggtgtggtggggtaggcagcctctgtgggagta
ccattgtcacaacagtcctcactttagggcccagggattgttttgttact
ctgagacccacactatttgctaggactctcagctgtgcaaatttcctttt
atagttgtcatgaatctgccacatttctcatgaattgttcaaatttcttc
cttctgtctcttaacattactatttggtgaaacaaagatgggatggaatt
cagtagggagatgggaagacaacagaatgggcaaaatctcaggatccatg
aacaaatgcgccacaccactaagtgagcaccggcacagggcacatgcact
tagtggcacttgctgacaaatagacatttgataggacactgtggtggcat
gccaccatgctccctgccatgatgataacaactaagcctctgaaactgtt
aaccgacccagttaaatgcttcctttgccaggagttgccttgtttgtggt
gtctcttcagagtcataacacagtaagacttaatgcttgagtgttgaaag
tttgtagccagcatgtcagatgatgctgatccgatatggaacaaacagtg
acttcataggtaacaaagaatttcatatgcctactatcttcaagagtttc
cagggtgcagctttgttcttgtctagttttaaaaatatttagaataacat
ttgttcttttgtaaaaaaaaaaaggacggagagggatcttttcact
gaattcccatttctgtgatgggtaataagagacccactgttccagtctgt
ggtttaacaagctgttggatgtgaggaagaggtttagctctgtcacactc
taatcctgctcatatttgtttagctacctggtaaaatgctttttttgaaa
taatgcatccataataataaataatggttcatttacatgtatgtgtgtgt
gtgtgtgttcatatatatctgaatgtatctttggaagctagaagagggta
tcagatcccctgaaactagagttacaggtgattgttgtgtgtcatcctac
ataggttctaggaactgaactctggacctttgcaagagcaagacgtgtgc
ttaacagctaagccatctctccaggcctgtcatttactgggcatattata
atcactgctcttcaggtaacctttaaacccagtaaaccggcaatccctta
cataagtatcagtgcttctcccagagatctacctactgagatatgtgaag
aggagacatttattttggtttatatgctcaatctcaaggttggttgtttt
catacctccaagtatttgttgcaatgaggaatgaatgatgacagatgaca
taaagtgtgaaggcttttgtcatttgtcttgcattcacttcttattcaat
gaaagtcaatttggatcagataaacatgccatgaatcactcatgatgggg
aaacagatgcatctacaagagagaaggaaatgaccagaaaacaaatggca
cctggcccgtgtctggtgagtgacttctgtccatgttccctggtttatct
agaggcagtagccggggtccctacatgaccccagcaccctgctgccatct
tccttgatttccctgatcacctagagctgcagccagccatactgcagggc
tgacatctaaagcccagtctttgatctttttcagcacggtaccttggttc
agcagaggctttggggcctattaggtagatcatagtcttttagtctgctc
tgttgtggagattgagatgagtcatatagaatagagaagactgccttctt
atccttctggaagccagaggctattgggctcagatgaatgcaggaagagg
tgatcctccttgaaggggcctggatctcagtgcttcccgctacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35922934_35924084
seq2: B6Ng01-317I09.b_48_1193 (reverse)

seq1  AGTGAAAAGTATCCCTCTCTGTCTTTTTTTTTTTTTAAACAAAAGAACAA  50
      ||||||||| ||||||||| ||| |||||||||||   ||||||||||||
seq2  AGTGAAAAG-ATCCCTCTCCGTCCTTTTTTTTTTT---ACAAAAGAACAA  46

seq1  ATGTTATCTAAAATATTTTAAAAACTAGAACAAGAACAAAGCTGCAACCT  100
      |||||||   ||||||||| |||||||| ||||||||||||||||| |||
seq2  ATGTTATTCTAAATATTTTTAAAACTAG-ACAAGAACAAAGCTGCACCCT  95

seq1  GGAAACTCTTTGAAGATAGTAGGCATATGGAATTCTTTGTACCTTATGAA  150
      |||||||| |||||||||||||||||||| ||||||||||  | ||||||
seq2  GGAAACTC-TTGAAGATAGTAGGCATATGAAATTCTTTGTTACCTATGAA  144

seq1  GTCACTGTTTG-TCCATATCGGATCAGCATCATCTGACATGCTGGCTACA  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTTTGTTCCATATCGGATCAGCATCATCTGACATGCTGGCTACA  194

seq1  AACTTTCAACACTCAAGCATTAAGTCTTACTGTGTTATGACTCTGAAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAACACTCAAGCATTAAGTCTTACTGTGTTATGACTCTGAAGAG  244

seq1  ACACCACAAACAAGGCAACTCCTGGCAAAGGAAGCATTTAACTGGGTCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAAACAAGGCAACTCCTGGCAAAGGAAGCATTTAACTGGGTCGG  294

seq1  TTAACAGTTTCAGAGGCTTAGTTGTTATCATCATGGCAGGGAGCATGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTTTCAGAGGCTTAGTTGTTATCATCATGGCAGGGAGCATGGTG  344

seq1  GCATGCCACCACAGTGTCCTATCAAATGTCTATTTGTCAGCAAGTGCCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACCACAGTGTCCTATCAAATGTCTATTTGTCAGCAAGTGCCAC  394

seq1  TAAGTGCATGTGCCCTGTGCCGGTGCTCACTTAGTGGTGTGGCGCATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCATGTGCCCTGTGCCGGTGCTCACTTAGTGGTGTGGCGCATTTG  444

seq1  TTCATGGATCCTGAGATTTTGCCCATTCTGTTGTCTTCCCATCTCCCTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGATCCTGAGATTTTGCCCATTCTGTTGTCTTCCCATCTCCCTAC  494

seq1  TGAATTCCATCCCATCTTTGTTTCACCAAATAGTAATGTTAAGAGACAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCATCCCATCTTTGTTTCACCAAATAGTAATGTTAAGAGACAGA  544

seq1  AGGAAGAAATTTGAACAATTCATGAGAAATGTGGCAGATTCATGACAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAATTTGAACAATTCATGAGAAATGTGGCAGATTCATGACAACT  594

seq1  ATAAAAGGAAATTTGCACAGCTGAGAGTCCTAGCAAATAGTGTGGGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAAATTTGCACAGCTGAGAGTCCTAGCAAATAGTGTGGGTCTC  644

seq1  AGAGTAACAAAACAATCCCTGGGCCCTAAAGTGAGGACTGTTGTGACAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACAAAACAATCCCTGGGCCCTAAAGTGAGGACTGTTGTGACAAT  694

seq1  GGTACTCCCACAGAGGCTGCCTACCCCACCACACCAGTTAACAACACAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCCCACAGAGGCTGCCTACCCCACCACACCAGTTAACAACACAAC  744

seq1  AGAAACTTTCCTTCCAGTGTCCTCTATAACAGGCTGTCTCTCCATATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTTCCTTCCAGTGTCCTCTATAACAGGCTGTCTCTCCATATGAA  794

seq1  GTAAAGGAGAAATTCTTTCTGATTCTGAAAGCAGGTGAAGAGGAGACTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAGAAATTCTTTCTGATTCTGAAAGCAGGTGAAGAGGAGACTAG  844

seq1  AGTCTAATTTCATATGAAGAGTGAATATTAAATATTTCTCTGAAAGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTTCATATGAAGAGTGAATATTAAATATTTCTCTGAAAGAGAG  894

seq1  AATTGCTAAGATAATGAAATCTGTCATCTTGAATTTTGGAGAGAAGCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTAAGATAATGAAATCTGTCATCTTGAATTTTGGAGAGAAGCAAT  944

seq1  TAGATCTACCAGAAAGATATGAACAATGTTGGATACAAGCCTCCTTAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTACCAGAAAGATATGAACAATGTTGGATACAAGCCTCCTTAGCT  994

seq1  TGCCAATGTCTGACCCTGTCTCTCTTACAAATTCCTATGTTAATATCCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGTCTGACCCTGTCTCTCTTACAAATTCCTATGTTAATATCCTA  1044

seq1  GTGCACTAGATGATGAAATAGAAAGTGAGACCTTGGAAGGTGATTAGGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTAGATGATGAAATAGAAAGTGAGACCTTGGAAGGTGATTAGGTC  1094

seq1  CTAGCATGATCAGGTCCAAGCACAATGGAAGCAGAGACTTTTAATAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGATCAGGTCCAAGCACAATGGAAGCAGAGACTTTTAATAGAAT  1144

seq1  TC  1151
      ||
seq2  TC  1146

seq1: chr6_35799072_35800224
seq2: B6Ng01-317I09.g_69_1213

seq1  GAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTGTTCCAGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTGTTCCAGTCTGT  50

seq1  GGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCTCTGTCACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCTCTGTCACACTC  100

seq1  TAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGCTTTTTTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGCTTTTTTTGAAA  150

seq1  TAATGCATCCATAATAATAAATAATGGTTCATTTACATGTATGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATCCATAATAATAAATAATGGTTCATTTACATGTATGTGTGTGT  200

seq1  GTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCTAGAAGAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCTAGAAGAGGGTA  250

seq1  TCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTGTGTCATCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTGTGTCATCCTAC  300

seq1  ATAGGTTCTAGGAACTGAACTCTGGACCTTTGCAAGAGCAAGACGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCTAGGAACTGAACTCTGGACCTTTGCAAGAGCAAGACGTGTGC  350

seq1  TTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTGGGCATATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTGGGCATATTATA  400

seq1  ATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAACCGGCAATCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAACCGGCAATCCCTTA  450

seq1  CATAAGTATCAGTGCTTCTCCCAGAGATCTACCTACTGAGATATGTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTATCAGTGCTTCTCCCAGAGATCTACCTACTGAGATATGTGAAG  500

seq1  AGGAGACATTTATTTTGGTTTATATGCTCAATCTCAAGGTTGGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACATTTATTTTGGTTTATATGCTCAATCTCAAGGTTGGTTGTTTT  550

seq1  CATACCTCCAAGTATTTGTTGCAATGAGGAATGAATGATGACAGATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCCAAGTATTTGTTGCAATGAGGAATGAATGATGACAGATGACA  600

seq1  TAAAGTGTGAAGGCTTTTGTCATTTGTCTTGCATTCACTTCTTATTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGAAGGCTTTTGTCATTTGTCTTGCATTCACTTCTTATTCAAT  650

seq1  GAAAGTCAATTTGGATCAGATAAACATGCCATGAATCACTCATGATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAATTTGGATCAGATAAACATGCCATGAATCACTCATGATGGGG  700

seq1  AAACAGATGCATCTACAAGAGAGAAGGAAATGACCAGAAAACAAATGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGCATCTACAAGAGAGAAGGAAATGACCAGAAAACAAATGGCA  750

seq1  CCTGGCCCGTGTCTGGTGAGTGACTTCTGTCCATGTTCCCTGGTTTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCGTGTCTGGTGAGTGACTTCTGTCCATGTTCCCTGGTTTATCT  800

seq1  AGAGGCAGTAGCCGGGGTCCCTACATGACCCCAGCACCCTGCTGCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTAGCCGGGGTCCCTACATGACCCCAGCACCCTGCTGCCATCT  850

seq1  TCCTTGATTTCCCTGATCACCTAGAGCTGCAGCCAGCCATACTGCAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTTCCCTGATCACCTAGAGCTGCAGCCAGCCATACTGCAGGGC  900

seq1  TGACATCTAAAGCCCAGTCTTTGATC-TTTTCAGCACGGTACCTTGGTTC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACATCTAAAGCCCAGTCTTTGATCTTTTTCAGCACGGTACCTTGGTTC  950

seq1  AGGCAGAGGCTTTGGGGCTTATTAGGTAGATTCATAGTCTTTTAGTCTGC  999
      | |||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  A-GCAGAGGCTTTGGGGCCTATTAGGTAGA-TCATAGTCTTTTAGTCTGC  998

seq1  TCTGTTTGTTGGAAGATTTGAGATGAGTTCATTATAGATTAGAGAAGACT  1049
      |||| ||||  | ||| |||||||||| ||| |||||| |||||||||||
seq2  TCTG-TTGT--GGAGA-TTGAGATGAG-TCA-TATAGAATAGAGAAGACT  1042

seq1  GCCCTTTCTTTATTCCTTTCTGGAAGCCCAGAGGCTATGGGGCTCAGATG  1099
      |||  ||| ||||  | ||||||||| ||||||||||| |||||||||||
seq2  GCC--TTC-TTAT--CCTTCTGGAAG-CCAGAGGCTATTGGGCTCAGATG  1086

seq1  AATGCAGGAGAGAGGTGATCTTCC-TGA--GGGGCTGG--CTCAGTGC-T  1143
      ||||||||| |||||||||| ||| |||  ||| ||||  |||||||| |
seq2  AATGCAGGA-AGAGGTGATCCTCCTTGAAGGGGCCTGGATCTCAGTGCTT  1135

seq1  CCCGCTACAT  1153
      ||||||||||
seq2  CCCGCTACAT  1145