BAC Information

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BAC

Clone NameB6Ng01-317M09
Chromosome6 (Build37)
Map Location 15,235,946 - 15,362,807
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M09.bB6Ng01-317M09.g
ACCGA107835GA107836
length1,1301,102
definitionB6Ng01-317M09.b B6Ng01-317M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,361,668 - 15,362,807)(15,235,946 - 15,237,062)
sequence
gaattcttttaaaaaaaaaaaagaaagaaagaaagaaaagaaaaaaaaaa
ggcataagcaggatccagcatctgacctgaaatccaaggatttgattgat
cttaatgcccatggctctgaatatgataattttaatattaatgagcaaat
gagcagttttattatgcatgcgatatagttagaactaataagctgttcag
aatgagttttgctggatccccgagctgtggagatgagaccaagctaagat
attaaatcacctttcatttcttttaaaatttctttcagtaaatcaactga
cagaacattccttacattctctaatgagtaacaaaagaaaatgtaaacct
tcgacataaatacggtaactgaaaaaaatactctgaaacatatatcctgc
ggattatccctgacacgttcatcatataaaacacacactaagtaaccgca
taaataaaacaattacattcatttacagtaccgcggactgtagcaactaa
taacatctaaacattttgtaaattaaaagcattctgagccttgcacccat
atatctgcaatcgcccgccagattaatttgcattttaaatccaaattaat
tcactttagcatatctcagagtctaaaattcttagtatgctgatgagtgc
tccagagcttctattcttctcagctacaaacattttccccttttgtacca
aatggcttgtggctaattgatgtttctgactgctttttgaaatgaaaata
aaacagttcacttagtctgtgctgagtgcccttatctttccagacgttgc
tcatttccaaaaatagatgcacagagctaacattttttttcttttttctt
ttttttttttttttttttagctccttgtaagatccagacaatgaagttgt
ttggacaggggtatagatgaacccttttgtctaagtaaataaactgcatt
tatgttctgacaggataatattcactttactttcttttagttccagctga
gtagcagggcctcactccgtggcagcttcagtctggatgatgaggtatgg
gtggtgtacgaaaggagcagacgggacaaaactacagcctcattgtgtgc
aaagcaacagacattttcaaactatagcca

gaattcttacgttactttcttatgttagggtttggtttttcagaatgtgt
aagaaaacacaaaaataaatgaaaacatcttctgttttggttggtactct
gtcatacacagaaacaaacctgattggctgagtggtaatctctttgttct
ctgatttggctaagaatgcaaatgaaacccactcaattttatttggcatt
aaaactgcactttattttgtcaaaggagagggtttttttccccttgaatt
gtaagtacaaagaaaaagtgtttttaatcttagtgaaaatccttattaat
tcactttcaagataatctgatgttgatttgtcaaatttaattacagcttc
cggtaacacttgaagtctactgcttttgcttcaaaattgtaatatgaaaa
tgcaaattgaatgataatttgaaagggagtgggcattttaggaacactca
gagacaagttctgtggaaatgaggttgttgacgcagtttatgattttctc
ttcttgaagcactttcaacaaattagatttacgtcctgcaggactgcatg
catctgtatgattttgaataaatttgtacacatacgttttatgtggggag
ggttatatgtaaagaggaaaaaagaataatcatgtaaaaagggtgaaagt
cctcacttgtattaagtaaagaacatctggcagtccacttcatattttaa
aaagtatttagctatattctctcttttacttttaggctctccaggcagca
agacaacttttgttacagcagcaaaccagtggattgaaatctcctaagag
cagtgagaagcagaggccactgcaggttagtaaagcatgcctgtccttga
gatctgtttttaatgatgctcataacaacaatgacagatgtgtaaacatg
tcatgttatagaagtaatttgtgcattgcaccatattgaacctattagtt
ctaaaggaaaattcatgggattttgtagagactttgcaaatactgttata
gattcaaaaagtttccaggtcattcttacaaatgtcaaggaggatgtaca
tataggcaatacatatttggtgtaattcttcttgacattaatgggatttt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15361668_15362807
seq2: B6Ng01-317M09.b_44_1173 (reverse)

seq1  TGGCTAATTAGTTTGAAAAATGTCTGTTTGGCTTGTGCAACAAATGGAGG  50
      ||||||  ||||||| ||||||||||||  |||| ||| ||| |  ||||
seq2  TGGCTA--TAGTTTG-AAAATGTCTGTT--GCTT-TGC-ACACAATGAGG  43

seq1  CTGTAGGTTTTGTCCCGGTCTGCTCCTTTCGTACAC--ACCATACCTCAT  98
      ||||| |||||||||| |||||||||||||||||||   |||||||||||
seq2  CTGTA-GTTTTGTCCC-GTCTGCTCCTTTCGTACACCACCCATACCTCAT  91

seq1  CATCCAGACTGAAGCTGCCACGGGAGTGAGGGCCCTGGCTACTCAGCTGG  148
      ||||||||||||||||||||| ||||||| |||||| |||||||||||||
seq2  CATCCAGACTGAAGCTGCCAC-GGAGTGA-GGCCCT-GCTACTCAGCTGG  138

seq1  AACTAAAAGAAAGTAAAGTGAATATTATCCTGTCAGAACATAAATGCAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGAAAGTAAAGTGAATATTATCCTGTCAGAACATAAATGCAGT  188

seq1  TTATTTACTTAGACAAAAGGGTTCATCTATACCCCTGTCCAAACAACTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTTAGACAAAAGGGTTCATCTATACCCCTGTCCAAACAACTTC  238

seq1  ATTGTCTGGATCTTACAAGGAGCTAAAAAAAAAAAAAAAAAAAAGAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGGATCTTACAAGGAGCTAAAAAAAAAAAAAAAAAAAAGAAAAA  288

seq1  AGAAAAAAAATGTTAGCTCTGTGCATCTATTTTTGGAAATGAGCAACGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATGTTAGCTCTGTGCATCTATTTTTGGAAATGAGCAACGTC  338

seq1  TGGAAAGATAAGGGCACTCAGCACAGACTAAGTGAACTGTTTTATTTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATAAGGGCACTCAGCACAGACTAAGTGAACTGTTTTATTTTCA  388

seq1  TTTCAAAAAGCAGTCAGAAACATCAATTAGCCACAAGCCATTTGGTACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAGCAGTCAGAAACATCAATTAGCCACAAGCCATTTGGTACAA  438

seq1  AAGGGGAAAATGTTTGTAGCTGAGAAGAATAGAAGCTCTGGAGCACTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAATGTTTGTAGCTGAGAAGAATAGAAGCTCTGGAGCACTCAT  488

seq1  CAGCATACTAAGAATTTTAGACTCTGAGATATGCTAAAGTGAATTAATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACTAAGAATTTTAGACTCTGAGATATGCTAAAGTGAATTAATTT  538

seq1  GGATTTAAAATGCAAATTAATCTGGCGGGCGATTGCAGATATATGGGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAAATGCAAATTAATCTGGCGGGCGATTGCAGATATATGGGTGC  588

seq1  AAGGCTCAGAATGCTTTTAATTTACAAAATGTTTAGATGTTATTAGTTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGAATGCTTTTAATTTACAAAATGTTTAGATGTTATTAGTTGC  638

seq1  TACAGTCCGCGGTACTGTAAATGAATGTAATTGTTTTATTTATGCGGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCGCGGTACTGTAAATGAATGTAATTGTTTTATTTATGCGGTTA  688

seq1  CTTAGTGTGTGTTTTATATGATGAACGTGTCAGGGATAATCCGCAGGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTGTGTTTTATATGATGAACGTGTCAGGGATAATCCGCAGGATA  738

seq1  TATGTTTCAGAGTATTTTTTTCAGTTACCGTATTTATGTCGAAGGTTTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCAGAGTATTTTTTTCAGTTACCGTATTTATGTCGAAGGTTTAC  788

seq1  ATTTTCTTTTGTTACTCATTAGAGAATGTAAGGAATGTTCTGTCAGTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTGTTACTCATTAGAGAATGTAAGGAATGTTCTGTCAGTTGA  838

seq1  TTTACTGAAAGAAATTTTAAAAGAAATGAAAGGTGATTTAATATCTTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAAGAAATTTTAAAAGAAATGAAAGGTGATTTAATATCTTAGC  888

seq1  TTGGTCTCATCTCCACAGCTCGGGGATCCAGCAAAACTCATTCTGAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCATCTCCACAGCTCGGGGATCCAGCAAAACTCATTCTGAACAG  938

seq1  CTTATTAGTTCTAACTATATCGCATGCATAATAAAACTGCTCATTTGCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGTTCTAACTATATCGCATGCATAATAAAACTGCTCATTTGCTC  988

seq1  ATTAATATTAAAATTATCATATTCAGAGCCATGGGCATTAAGATCAATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTAAAATTATCATATTCAGAGCCATGGGCATTAAGATCAATCA  1038

seq1  AATCCTTGGATTTCAGGTCAGATGCTGGATCCTGCTTATGCCTTTTTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGGATTTCAGGTCAGATGCTGGATCCTGCTTATGCCTTTTTTTT  1088

seq1  TTCTTTTCTTTCTTTCTTTCTTTTTTTTTTTTAAAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTCTTTCTTTCTTTTTTTTTTTTAAAAGAATTC  1130


seq1: chr6_15235946_15237062
seq2: B6Ng01-317M09.g_69_1170

seq1  GAATTCTTACGTTACTTTCTTATGTTAGGGTTTGGTTTTTCAGAATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACGTTACTTTCTTATGTTAGGGTTTGGTTTTTCAGAATGTGT  50

seq1  AAGAAAACACAAAAATAAATGAAAACATCTTCTGTTTTGGTTGGTACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACACAAAAATAAATGAAAACATCTTCTGTTTTGGTTGGTACTCT  100

seq1  GTCATACACAGAAACAAACCTGATTGGCTGAGTGGTAATCTCTTTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACACAGAAACAAACCTGATTGGCTGAGTGGTAATCTCTTTGTTCT  150

seq1  CTGATTTGGCTAAGAATGCAAATGAAACCCACTCAATTTTATTTGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGGCTAAGAATGCAAATGAAACCCACTCAATTTTATTTGGCATT  200

seq1  AAAACTGCACTTTATTTTGTCAAAGGAGAGGGTTTTTTTCCCCTTGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCACTTTATTTTGTCAAAGGAGAGGGTTTTTTTCCCCTTGAATT  250

seq1  GTAAGTACAAAGAAAAAGTGTTTTTAATCTTAGTGAAAATCCTTATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACAAAGAAAAAGTGTTTTTAATCTTAGTGAAAATCCTTATTAAT  300

seq1  TCACTTTCAAGATAATCTGATGTTGATTTGTCAAATTTAATTACAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCAAGATAATCTGATGTTGATTTGTCAAATTTAATTACAGCTTC  350

seq1  CGGTAACACTTGAAGTCTACTGCTTTTGCTTCAAAATTGTAATATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAACACTTGAAGTCTACTGCTTTTGCTTCAAAATTGTAATATGAAAA  400

seq1  TGCAAATTGAATGATAATTTGAAAGGGAGTGGGCATTTTAGGAACACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTGAATGATAATTTGAAAGGGAGTGGGCATTTTAGGAACACTCA  450

seq1  GAGACAAGTTCTGTGGAAATGAGGTTGTTGACGCAGTTTATGATTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGTTCTGTGGAAATGAGGTTGTTGACGCAGTTTATGATTTTCTC  500

seq1  TTCTTGAAGCACTTTCAACAAATTAGATTTACGTCCTGCAGGACTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAGCACTTTCAACAAATTAGATTTACGTCCTGCAGGACTGCATG  550

seq1  CATCTGTATGATTTTGAATAAATTTGTACACATACGTTTTATGTGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTATGATTTTGAATAAATTTGTACACATACGTTTTATGTGGGGAG  600

seq1  GGTTATATGTAAAGAGGAAAAAAGAATAATCATGTAAAAAGGGTGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATGTAAAGAGGAAAAAAGAATAATCATGTAAAAAGGGTGAAAGT  650

seq1  CCTCACTTGTATTAAGTAAAGAACATCTGGCAGTCCACTTCATATTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTGTATTAAGTAAAGAACATCTGGCAGTCCACTTCATATTTTAA  700

seq1  AAAGTATTTAGCTATATTCTCTCTTTTACTTTTAGGCTCTCCAGGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTAGCTATATTCTCTCTTTTACTTTTAGGCTCTCCAGGCAGCA  750

seq1  AGACAACTTTTGTTACAGCAGCAAACCAGTGGATTGAAATCTCCTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTTTTGTTACAGCAGCAAACCAGTGGATTGAAATCTCCTAAGAG  800

seq1  CAGTGAGAAGCAGAGGCCACTGCAGGTTAGTAAAGCATGCCTGTCCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAAGCAGAGGCCACTGCAGGTTAGTAAAGCATGCCTGTCCTTGA  850

seq1  GATCTGTTTTTAATGATGCTCATAACAACAATGACAGATGTGTAAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATCTGTTTTTAATGATGCTCATAACAACAATGACAGATGTGT-AAACAT  899

seq1  GTCATGTTTATAGAAGTAATTTGTGCATTTGCA-CATATTGAACCTATTA  949
      |||||| |||||||||||||||||||| ||||| ||||||||||||||||
seq2  GTCATG-TTATAGAAGTAATTTGTGCA-TTGCACCATATTGAACCTATTA  947

seq1  GTTCTAAAGGAAAATTCATGGGATTTTTGTAAAGAGGACTTTGCAAATAC  999
      ||||||||||||||||||||||| ||||||| |   ||||||||||||||
seq2  GTTCTAAAGGAAAATTCATGGGA-TTTTGTAGA---GACTTTGCAAATAC  993

seq1  TGTTATAGATTTCAAAAAGTTTCCAAGTTCATTCTTTACAAAATGTCAAG  1049
      ||||||||| |||||||||||||| || |||||| |||| ||||||||||
seq2  TGTTATAGA-TTCAAAAAGTTTCC-AGGTCATTC-TTAC-AAATGTCAAG  1039

seq1  GAGGAATGTTACATATAGGCAATACATATTTTGTGTGAATTCCTTCCTGG  1099
      |||| ||| |||||||||||||||||||||| |||| |||||  | || |
seq2  GAGG-ATG-TACATATAGGCAATACATATTTGGTGT-AATTC--TTCTTG  1084

seq1  ACATTAATGGGATTTTGT  1117
      ||||||||||||||||||
seq2  ACATTAATGGGATTTTGT  1102


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