BAC Information

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BAC

Clone NameB6Ng01-317O21
Chromosome18 (Build37)6 (Build37)
Map Location 13,395,239 - 13,396,441130,470,968 - 130,471,084
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnkrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
Downstream geneLOC665379, LOC100040358, Zfp521, LOC100040094, LOC100040103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O21.bB6Ng01-317O21.g
ACCGA107949GA107950
length1,190925
definitionB6Ng01-317O21.b B6Ng01-317O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,395,239 - 13,396,441)(130,470,968 - 130,471,084)
sequence
gaattcactgaaatggaacaaaagggatatggaacaagttaatgttttca
tatttgatttaactagcaggttatgcacgagacttgttcaactatgagtt
ggtggccttattcaggcagaaggagcagtgcaagacccgaaggctggatg
tggctggccatgctgaggcagtgggtgctcattcttgtaggatgagtctt
tcctgtaagcatgaagagtctctggtgcttgttaaataccatatttatgc
catgtatttgtatacagtgggattaggggaccaaactgaatcactgctga
tagttgcttgaagggatgtttgactaggagatttacacagtgttcttaat
aatcttttttatttatttatagaatgttatcattccaaacatacagagct
gcatccccaaggagagacgctttctatttgaggatcaccagctctgcatg
ttgattttctaagagataaaaagagcatctggccaccatagcacaggctc
acttcccctccctcttcattatgcgaagagcagatgagaattttgcttca
ttcctatttatacaaataaagacagcagtctgggagatatgtcacactgg
catgaagtgccaccgatcttgctgggtcgaaatgtacatgttccattaac
aacaattatagtgtataattaaggtttgggttcccaagtgggactctgta
gcttcctcaaatagtcgtggggttaggaaagacatgagaaagtaaatata
tgcctccatcattctcccaatagttgcctaactcttgcttcaccccagag
tatcaccggtttgtgtgtcaaagatggtctataaagaacatagtgttcaa
gtgccctctactgtagccaggggtaatgctactatgaaaacagtcatgat
tttagaagaaagacactagcaagcaaagctatctgaatattcccatgcat
ttatggggtccctgtgtaatggggtccatgtatcaaaatgaggttcagta
gatgatttcaaatgacactcctgcatgggcttgtctgtgaagaggttctt
tttgtaagaacctccattttaagttagatggaatttctggagcattatat
attccagttactccatttcccatgtatacaccaaggaacggttaatgacc
tcaggtcttcactctgggtggctctcagaaccctctcttc
gaattctcacatctaaacagggctgaggccaccatgtttagagcattcca
cctgacttgtatggaagccctgggaaaaactctgttccaacagcagacag
gaagcagcagatgagcaatgaagatcagtgggaaaaacacttgggaaggg
tcagcctggcctgcagttcttgaggtgggaagggtcaagtcctgggtgtc
ttcacattgtcatacaaacgattcctcatgagtaggctctctgcatctgg
aagtaagcgagggcccagcttctgtggagggtttagccccctcagagcag
accatactttttcgttttgaagaaatatgtacatttttcctttgacatga
tagactcatatatgtgtgcactgcatatatgtgtgtgtgtgtgtatgtat
atatgtatatatttgcatgtgtgcatgctggatagaaaccttacaaatgt
agtgaatgtgacaaatgttttactgagaaaaacagtctgagaaggcatca
gagaattcatacaggagagaaaccttataaatgcagtgaatgtgacaaat
gctttacccgaaaatcacatcttagtattcatcagagaattcatacagga
gagaaactgtacaaatgcagtgaatgtgacaaatgctttacccaacaatg
ccatcttagtattcatcagaaaattcattcaggagagaaccttacaaatg
caatgaatgcgacaaatgctttagtgacaaacacagtctgagaaggcatc
agagaattcatacaggagagacaccttacaaatgtaatgaatgtgacaaa
tgctttacctgaaaatcacatcttagtattcatcagataattcatacagg
agagaaaccttacaaatgtaatgaatgtgacaaatcctttactgaaatgg
cttgtctgagaattcatcagagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_13395239_13396441
seq2: B6Ng01-317O21.b_43_1232

seq1  GAATTCACTGAAATGGAACAAAAGGGATATGGAACAAGTTAATGTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATGGAACAAAAGGGATATGGAACAAGTTAATGTTTTCA  50

seq1  TATTTGATTTAACTAGCAGGTTATGCACGAGACTTGTTCAACTATGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTAACTAGCAGGTTATGCACGAGACTTGTTCAACTATGAGTT  100

seq1  GGTGGCCTTATTCAGGCAGAAGGAGCAGTGCAAGACCCGAAGGCTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTATTCAGGCAGAAGGAGCAGTGCAAGACCCGAAGGCTGGATG  150

seq1  TGGCTGGCCATGCTGAGGCAGTGGGTGCTCATTCTTGTAGGATGAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCATGCTGAGGCAGTGGGTGCTCATTCTTGTAGGATGAGTCTT  200

seq1  TCCTGTAAGCATGAAGAGTCTCTGGTGCTTGTTAAATACCATATTTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAGCATGAAGAGTCTCTGGTGCTTGTTAAATACCATATTTATGC  250

seq1  CATGTATTTGTATACAGTGGGATTAGGGGACCAAACTGAATCACTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTGTATACAGTGGGATTAGGGGACCAAACTGAATCACTGCTGA  300

seq1  TAGTTGCTTGAAGGGATGTTTGACTAGGAGATTTACACAGTGTTCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTTGAAGGGATGTTTGACTAGGAGATTTACACAGTGTTCTTAAT  350

seq1  AATCTTTTTTATTTATTTATAGAATGTTATCATTCCAAACATACAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTTATTTATTTATAGAATGTTATCATTCCAAACATACAGAGCT  400

seq1  GCATCCCCAAGGAGAGACGCTTTCTATTTGAGGATCACCAGCTCTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCAAGGAGAGACGCTTTCTATTTGAGGATCACCAGCTCTGCATG  450

seq1  TTGATTTTCTAAGAGATAAAAAGAGCATCTGGCCACCATAGCACAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCTAAGAGATAAAAAGAGCATCTGGCCACCATAGCACAGGCTC  500

seq1  ACTTCCCCTCCCTCTTCATTATGCGAAGAGCAGATGAGAATTTTGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCTCCCTCTTCATTATGCGAAGAGCAGATGAGAATTTTGCTTCA  550

seq1  TTCCTATTTATACAAATAAAGACAGCAGTCTGGGAGATATGTCACACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTATACAAATAAAGACAGCAGTCTGGGAGATATGTCACACTGG  600

seq1  CATGAAGTGCCACCGATCTTGCTGGGTCGAAATGTACATGTTCCATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTGCCACCGATCTTGCTGGGTCGAAATGTACATGTTCCATTAAC  650

seq1  AACAATTATAGTGTATAATTAAGGTTTGGGTTCCCAAGTGGGACTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATAGTGTATAATTAAGGTTTGGGTTCCCAAGTGGGACTCTGTA  700

seq1  GCTTCCTCAAATAGTCGTGGGGTTAGGAAAGACATGAGAAAGTAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCAAATAGTCGTGGGGTTAGGAAAGACATGAGAAAGTAAATATA  750

seq1  TGCCTCCATCATTCTCCCAATAGTTGCCTAACTCTTGCTTCACCCCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCATCATTCTCCCAATAGTTGCCTAACTCTTGCTTCACCCCAGAG  800

seq1  TATCACCGGTTTGTGTGTCAAAGATGGTCTATAAAGAACATAGTGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCGGTTTGTGTGTCAAAGATGGTCTATAAAGAACATAGTGTTCAA  850

seq1  GTGCCCTCTACTGTAGCCAGGGGTAATGCTACTATGAAAACAGTCATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCTACTGTAGCCAGGGGTAATGCTACTATGAAAACAGTCATGAT  900

seq1  TTTAGAAGAAAGACACTAGCAAGCAAAGCTATCTGAATATTCCCATGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGAAAGACACTAGCAAGCAAAGCTATCTGAATATTCCCATGCAT  950

seq1  TTATGGGGTCCCTGTGTAATGGGGTCCATGTATCAAAATGAGGTTCAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTATGGGGTCCCTGTGTAATGGGGTCCATGTATCAAAATGAGGTTCAG--  998

seq1  TAAGATGATTTCAAATGACAACTCCTGCATGGGGCTGTCTGTGGAAGA-G  1049
        ||||||||||||||||| |||||||||||||  ||||||| ||||| |
seq2  -TAGATGATTTCAAATGAC-ACTCCTGCATGGGCTTGTCTGT-GAAGAGG  1045

seq1  TTC-TTTTGTA--GACCTCCATTTTTAGGTTTAGATGGAAATTTTCTGAA  1096
      ||| |||||||   ||||||||||| ||  ||||||||||  |||||| |
seq2  TTCTTTTTGTAAGAACCTCCATTTTAAG--TTAGATGGAA--TTTCTGGA  1091

seq1  GCAATTATA-ATTTCAG-TACACTCATTCACATGTATAAACAACCACAAA  1144
      || |||||| ||| ||| ||| |   ||| ||||||||      ||| ||
seq2  GC-ATTATATATTCCAGTTACTCCATTTCCCATGTATA------CACCAA  1134

seq1  GAAAGGGTTAATGACCTTCAGGTCTTCTCATCTGGGTGGGTCTCTGGACA  1194
      | || ||||||||||| |||||||||| | ||||||||| |||| | || 
seq2  GGAACGGTTAATGACC-TCAGGTCTTCAC-TCTGGGTGGCTCTCAGAAC-  1181

seq1  CCTCTCTTC  1203
      |||||||||
seq2  CCTCTCTTC  1190

seq1: chr6_130470968_130471084
seq2: B6Ng01-317O21.g_577_945 (reverse)

seq1  CACATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAGTTCTGTAGTGA  50
      |||||||||||||||||||||||||||||||||||||| || | |  |||
seq2  CACATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAATTATCTGATGA  50

seq1  ACTTTAAGCACAT--TTTTCTGTGGAAAG-ATTTCCCACATTCATTACAT  97
      |   |||| |  |  ||||| | | |||| ||||  ||||||||||||||
seq2  ATACTAAG-ATGTGATTTTCAG-GTAAAGCATTTGTCACATTCATTACAT  98

seq1  TTGTAAGGTTTCTCTCCTGT------------------------------  117
      ||||||||| ||||||||||                              
seq2  TTGTAAGGTGTCTCTCCTGTATGAATTCTCTGATGCCTTCTCAGACTGTG  148

seq1  --------------------------------------------------  117
                                                        
seq2  TTTGTCACTAAAGCATTTGTCGCATTCATTGCATTTGTAAGGTTCTCTCC  198

seq1  --------------------------------------------------  117
                                                        
seq2  TGAATGAATTTTCTGATGAATACTAAGATGGCATTGTTGGGTAAAGCATT  248

seq1  --------------------------------------------------  117
                                                        
seq2  TGTCACATTCACTGCATTTGTACAGTTTCTCTCCTGTATGAATTCTCTGA  298

seq1  --------------------------------------------------  117
                                                        
seq2  TGAATACTAAGATGTGATTTTCGGGTAAAGCATTTGTCACATTCACTGCA  348

seq1  ---------------------  117
                           
seq2  TTTATAAGGTTTCTCTCCTGT  369