BAC Information

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BAC

Clone NameB6Ng01-318B11
Chromosome6 (Build37)
Map Location 45,244,579 - 45,245,725
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318B11.bB6Ng01-318B11.g
ACCGA108066GA108067
length1,1391,140
definitionB6Ng01-318B11.b B6Ng01-318B11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattaatgaatatagctaattaaaatcaaaagcaaggtgttctg
atgtgctgttgtatagctggctgtaccctccaataaaacagacataagaa
tgttgactatttctaggataaataaatgataaatatttaagatgatacat
gtatataatatagttttatatagcaatgtgtgtaatacatataacataca
tatgaagaactccatacatatgaacaacttctgtatgtcaattaaataaa
tatataaatattatgaagtcttaaattaaactttatctcatttgaaaatt
ttcactttttagtagtaagaaggtaaataaacttatttttatatttttct
attctttaaattatctgattagaagtttgattatttctgaaaagatgtta
ccctccatatgtttaataaatgcccagtatataatttggaatatggcttt
ctcttgttttttgttaatttctgcttagtaaaaggtaaatcaatcttttt
gagagatgttgacacatctagagtaatggctcatattactagcctcagca
agttattggataatgtaacaagcattgtttaatgaagtcatatctttctt
tgaaaatagacagactatccttatcctcaatttgtgatttgtaatataca
gacacattatggatcctttaaaaagctatgcttagcttcagatggctgaa
gcagcataataaaactaaaattcttagaatataataactcttcccatagc
tataaaaagcatgaatgtcattgtcattctgccccttgttagaaatatga
atatacagaaaatacgtctacttgttgaaatattgagcttagtgacactc
aagatccgtagcatgagacccttaatcaagcagtgcagacatcctgcatg
tccagaaataggaaaggataaagcaaacctaaaggctcaaagttctatgt
gcataacccctgctgattcatcaagacacaattggttattaatggaatta
caattatagtgaataacataggtcttcaactcattttttttcttaattca
atttgtcagtagatgaaaaaaaaaaatctaactaaaggtaatgacttact
cctctctactactctgcacagctactggttggagaacct

gaattcttctatttagtattgcttacagatgatttaagagatcattaaaa
ataagtccaatcttaaactgtgacataaataaaattaaaataccaatacc
aatgtccaaatcagccttatttttggttcacatatggtatatacttttcc
atgggagcagaaaaaatatctcagactcatggtattcagcttgatattta
ctgaaattccatgtttctctctcacgcatgagagatgtattactctatct
tgatttcttctgaattcttagaaaattccaaaaaaaaaaaaaacacctaa
tatgtagtaaatagtcaatacaaacttcttctgaacaatatctgttttat
gagtacatttgcttggtagaacatacacttgtggttatttaattcttctg
taaatactaagttttcctttggaagtgctggaattttttattattatttt
atatatttacacttcaaatgttgcccctcttcccggttctctgttcatga
gccttccaccccagtcctcttccccattgactctaagaaggtgctcccca
cccccatacccattcactcctacctcacctttctagcaccccctttttct
gggacatcaagcctccacaggaccatgcacattccctcccgctgaggcca
ggcaaggcagtcctctgctaaatatgcagcaggaaccacagatcatccca
tgtatgctgtctggttgctgggttagtccctgggagctctgagaggtctg
gttagttgatactgttgttctttctatggaattgcaatacccttcagttc
ctacagtcctggcccccttttttttcttcctcttccctcttccacccagg
tctcttcatccctttgccttctgtgataattctgtccccccttctaagtg
ggattaaagcatccacacgtcatccttcattcttgttaagcctcatatgg
gtttgtgaattctatcatgggtttctgaaattttcggtcatatccactat
cagtgagtagataccttttggcttgggtactcactagatgaatatttcta
ggtcatgtattgctgccatttcatgatggcctctttaatacgagttacca
tcccattggttaactacccacaagtcggtaattccagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45244579_45245725
seq2: B6Ng01-318B11.b_45_1183

seq1  GAATTCTATTAATGAATATAGCTAATTAAAATCAAAAGCAAGGTGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAATGAATATAGCTAATTAAAATCAAAAGCAAGGTGTTCTG  50

seq1  ATGTGCTGTTGTATAGCTGGCTGTACCCTCCAATAAAACAGACATAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGTTGTATAGCTGGCTGTACCCTCCAATAAAACAGACATAAGAA  100

seq1  TGTTGACTATTTCTAGGATAAATAAATGATAAATATTTAAGATGATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTATTTCTAGGATAAATAAATGATAAATATTTAAGATGATACAT  150

seq1  GTATATAATATAGTTTTATATAGCAATGTGTGTAATACATATAACATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATATAGTTTTATATAGCAATGTGTGTAATACATATAACATACA  200

seq1  TATGAAGAACTCCATACATATGAACAACTTCTGTATGTCAATTAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAACTCCATACATATGAACAACTTCTGTATGTCAATTAAATAAA  250

seq1  TATATAAATATTATGAAGTCTTAAATTAAACTTTATCTCATTTGAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATATTATGAAGTCTTAAATTAAACTTTATCTCATTTGAAAATT  300

seq1  TTCACTTTTTAGTAGTAAGAAGGTAAATAAACTTATTTTTATATTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTTAGTAGTAAGAAGGTAAATAAACTTATTTTTATATTTTTCT  350

seq1  ATTCTTTAAATTATCTGATTAGAAGTTTGATTATTTCTGAAAAGATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAATTATCTGATTAGAAGTTTGATTATTTCTGAAAAGATGTTA  400

seq1  CCCTCCATATGTTTAATAAATGCCCAGTATATAATTTGGAATATGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATATGTTTAATAAATGCCCAGTATATAATTTGGAATATGGCTTT  450

seq1  CTCTTGTTTTTTGTTAATTTCTGCTTAGTAAAAGGTAAATCAATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTTTTGTTAATTTCTGCTTAGTAAAAGGTAAATCAATCTTTTT  500

seq1  GAGAGATGTTGACACATCTAGAGTAATGGCTCATATTACTAGCCTCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTTGACACATCTAGAGTAATGGCTCATATTACTAGCCTCAGCA  550

seq1  AGTTATTGGATAATGTAACAAGCATTGTTTAATGAAGTCATATCTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGGATAATGTAACAAGCATTGTTTAATGAAGTCATATCTTTCTT  600

seq1  TGAAAATAGACAGACTATCCTTATCCTCAATTTGTGATTTGTAATATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGACAGACTATCCTTATCCTCAATTTGTGATTTGTAATATACA  650

seq1  GACACATTATGGATCCTTTAAAAAGCTATGCTTAGCTTCAGATGGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTATGGATCCTTTAAAAAGCTATGCTTAGCTTCAGATGGCTGAA  700

seq1  GCAGCATAATAAAACTAAAATTCTTAGAATATAATAACTCTTCCCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATAATAAAACTAAAATTCTTAGAATATAATAACTCTTCCCATAGC  750

seq1  TATAAAAAGCATGAATGTCATTGTCATTCTGCCCCTTGTTAGAAATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAGCATGAATGTCATTGTCATTCTGCCCCTTGTTAGAAATATGA  800

seq1  ATATACAGAAAATACGTCTACTTGTTGAAATATTGAGCTTAGTGACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAAAATACGTCTACTTGTTGAAATATTGAGCTTAGTGACACTC  850

seq1  AAGATCCGTAGCATGAGACCCTTAATCAAGCAGTGCAGACATCCTGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCGTAGCATGAGACCCTTAATCAAGCAGTGCAGACATCCTGCATG  900

seq1  TCCAGAAATAGG-AAGGATAAAGCAAACCTAAAGGCTCAAAGTTCTATGT  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATAGGAAAGGATAAAGCAAACCTAAAGGCTCAAAGTTCTATGT  950

seq1  GCATAACCCCTGCTGATTCATCAAAGACAACAATTGGTTATTAATGGAAT  999
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GCATAACCCCTGCTGATTCATC-AAGAC-ACAATTGGTTATTAATGGAAT  998

seq1  TACAAATTATAGTTGAAT-ACATAGGTCTTCAAACCTCATTTTTTTCCTT  1048
      ||| |||||||| ||||| ||||||||||||||  ||||||||||| |||
seq2  TAC-AATTATAG-TGAATAACATAGGTCTTCAA--CTCATTTTTTTTCTT  1044

seq1  TAAATTTCAAATTTGTCCAGTAGATGAAAAAAAAAAAATCTACCTAAA-G  1097
        ||||   ||||||| ||||||||| ||||||||||||||| ||||| |
seq2  --AATT--CAATTTGT-CAGTAGATG-AAAAAAAAAAATCTAACTAAAGG  1088

seq1  TAATGAC-TACT-CTCTCTACTTACTCTGAAACAGCTACT-GTTGGAGAA  1144
      ||||||| |||| |||||||| |||||||  ||||||||| |||||||||
seq2  TAATGACTTACTCCTCTCTAC-TACTCTG-CACAGCTACTGGTTGGAGAA  1136

seq1  CCT  1147
      |||
seq2  CCT  1139


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