BAC Information

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BAC

Clone NameB6Ng01-318B23
Chromosome6 (Build37)
Map Location 6,791,614 - 6,792,734
singlet/doubletsinglet
Overlap genenone
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826
Downstream geneDlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511, Asns, EG667529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318B23.bB6Ng01-318B23.g
ACCGA108090GA108091
length1,1111,143
definitionB6Ng01-318B23.b B6Ng01-318B23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagctagggttccactgagagatcttatctcaaaattaa
atcaaagcaattcaaaacaaaaccaaaattatagaatgttgttatccgta
gtgcagaacacatttctgctagccagggacaaaggctcttcgtctgacat
ttttaactggtctgcctcatgtgtaggccagaactcttggtaattatttc
attaatctccagaagcaggggttactggagtgtttgaaagcagtttgttt
tcttaagaagattaatcaccccctgcaaggctaatttaattagactgtaa
actctctttcttccaccaaaggaacagttaaaccaattccccatcatgga
ttattaagtgtgtcaaaggcatacagtccacaccaatgaactttcggaat
aacttgtaaatatttgcattcagtggttaagaagggtgatttcctcctgc
tctggtcacgggaattgcagggactgtttataatcttcctgcaagaagag
aagaaattaaaacaaaattataggagaagatgaagttccatttctgtgtg
agaaagttgactttccactgtcaaagaggaaatcttggtatccttagcct
gaaggaagtgcaggtatggtttggttgcatatccaaagagttttccatct
cacaggttttccatctctggtacctcttttaagatacttccaatttattt
atgctttgcacctttccacgaatgatttgaagtgggttcaataacaggca
tgtaactgaaacaagcaatccactctgcccacgctcatttctgagtcatg
cagtagactttctctcagcaggctgaccaacatacttctgccaaaggaac
attcatgagggaggtttactattaatacaacaacatacatagaaccctct
atcctttatcttacccatgtagacaattggttcagaaaaagacagccctt
cttacctcaattcagtttgtcatataaatatggcctacctggtccatctc
agacctgctaagacatgcagcaagcttgtgtagcctctcttggccaccta
ccccatgtggttgctgaagatagtgtgaaatgttttgttggtttcaagtg
acctccaagct
gaattcctgatctttccaagacatttaacatgaatgggtgttggattttg
tcaaatgctttctctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtgaattacgttgatggatttctgtatattaaacc
atccctgcattcctggaatgaaacttactcggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcgataattttattgaggatctttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgttgtttaggtatcagagtaattgtggtttcatagaatgagttg
ggtagagtacattctgcttctgttttgtgtaatagtttgtaaagaactgg
aattagctcttctttgaaggtctgatagaactctgcaccaaacccatctg
gccctgggctttttttggttgggagactattaatgactgcttctatttct
ttaggggatataggattgtttatacgattaacctgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcatccagggttttca
gttttgttgagtatagccttttgtagaaggatctgatagtgttttggatt
tcttcaggatctgttgttctgtctcccttttcatttctgattttgttaat
taggatgctgtccctgtgccctctagtgagtctggctaagggtttatcta
tcttgttgatttttctcaaagaaccagctcctggtttggttgattcttta
atagttcttcttctttccacttcgttgattttgcccctgagtttgattat
ttcctgctgtctattcctcttgggtgaatttgcttccttttgttctagag
cttttagtgtgttgtcagctgctagtgtgtgctctctctagtttcttttt
tgggaggcactcagagctatgagttttcctcttagaaatgcttcattgtg
tccatagttggttttgttgtggcctcaatttcataactctaaaagtcttt
aatttcgtattcttccttgaccagtatcatggaaagaggtcgttcagttc
cagttagttgcctttctatacccttaagtttgttaatttcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6791614_6792734
seq2: B6Ng01-318B23.b_46_1156 (reverse)

seq1  AGCTTGGGAGGTCCAACCTGAAA-CAACAAAACATTTTCACACTATCCTT  49
      ||||| |||||||  || ||||| |||||||||| ||||||||||||  |
seq2  AGCTT-GGAGGTC--ACTTGAAACCAACAAAACA-TTTCACACTATC--T  44

seq1  TCAGCAACCACATGGGGTAGGTGGCCAAGAGAGGCTACACAAGCTTGCTT  99
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGCAACCACATGGGGTAGGTGGCCAAGAGAGGCTACACAAGCTTGC-T  93

seq1  GCATGTCTTAAGCAGGGTTCTGAGATGGACCAGGTAGGCCATATTTATAT  149
      ||||||||| ||||||  ||||||||||||||||||||||||||||||||
seq2  GCATGTCTT-AGCAGG--TCTGAGATGGACCAGGTAGGCCATATTTATAT  140

seq1  GACAAACCTGAATTTGAGGTAAGAA-GGCTGTCTTTTTCTGAACCAATTG  198
      |||||| ||||| |||||||||||| ||||||||||||||||||||||||
seq2  GACAAA-CTGAA-TTGAGGTAAGAAGGGCTGTCTTTTTCTGAACCAATTG  188

seq1  TCTACATGGGTAAGATAAAGGATAGAGGGTTCTATGTATGTTGTTGTATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGGGTAAGATAAAGGATAGAGGGTTCTATGTATGTTGTTGTATT  238

seq1  AATAGTAAACCTCCCTCATGAATGTTCCTTTGGCAGAAGTATGTTGGTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAACCTCCCTCATGAATGTTCCTTTGGCAGAAGTATGTTGGTCA  288

seq1  GCCTGCTGAGAGAAAGTCTACTGCATGACTCAGAAATGAGCGTGGGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGAGAGAAAGTCTACTGCATGACTCAGAAATGAGCGTGGGCAGA  338

seq1  GTGGATTGCTTGTTTCAGTTACATGCCTGTTATTGAACCCACTTCAAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGCTTGTTTCAGTTACATGCCTGTTATTGAACCCACTTCAAATC  388

seq1  ATTCGTGGAAAGGTGCAAAGCATAAATAAATTGGAAGTATCTTAAAAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGGAAAGGTGCAAAGCATAAATAAATTGGAAGTATCTTAAAAGAG  438

seq1  GTACCAGAGATGGAAAACCTGTGAGATGGAAAACTCTTTGGATATGCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAGATGGAAAACCTGTGAGATGGAAAACTCTTTGGATATGCAAC  488

seq1  CAAACCATACCTGCACTTCCTTCAGGCTAAGGATACCAAGATTTCCTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATACCTGCACTTCCTTCAGGCTAAGGATACCAAGATTTCCTCTT  538

seq1  TGACAGTGGAAAGTCAACTTTCTCACACAGAAATGGAACTTCATCTTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGGAAAGTCAACTTTCTCACACAGAAATGGAACTTCATCTTCTC  588

seq1  CTATAATTTTGTTTTAATTTCTTCTCTTCTTGCAGGAAGATTATAAACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTTGTTTTAATTTCTTCTCTTCTTGCAGGAAGATTATAAACAG  638

seq1  TCCCTGCAATTCCCGTGACCAGAGCAGGAGGAAATCACCCTTCTTAACCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAATTCCCGTGACCAGAGCAGGAGGAAATCACCCTTCTTAACCA  688

seq1  CTGAATGCAAATATTTACAAGTTATTCCGAAAGTTCATTGGTGTGGACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCAAATATTTACAAGTTATTCCGAAAGTTCATTGGTGTGGACTG  738

seq1  TATGCCTTTGACACACTTAATAATCCATGATGGGGAATTGGTTTAACTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTTGACACACTTAATAATCCATGATGGGGAATTGGTTTAACTGT  788

seq1  TCCTTTGGTGGAAGAAAGAGAGTTTACAGTCTAATTAAATTAGCCTTGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGTGGAAGAAAGAGAGTTTACAGTCTAATTAAATTAGCCTTGCA  838

seq1  GGGGGTGATTAATCTTCTTAAGAAAACAAACTGCTTTCAAACACTCCAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGATTAATCTTCTTAAGAAAACAAACTGCTTTCAAACACTCCAGT  888

seq1  AACCCCTGCTTCTGGAGATTAATGAAATAATTACCAAGAGTTCTGGCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGCTTCTGGAGATTAATGAAATAATTACCAAGAGTTCTGGCCTA  938

seq1  CACATGAGGCAGACCAGTTAAAAATGTCAGACGAAGAGCCTTTGTCCCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGGCAGACCAGTTAAAAATGTCAGACGAAGAGCCTTTGTCCCTG  988

seq1  GCTAGCAGAAATGTGTTCTGCACTACGGATAACAACATTCTATAATTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGAAATGTGTTCTGCACTACGGATAACAACATTCTATAATTTTG  1038

seq1  GTTTTGTTTTGAATTGCTTTGATTTAATTTTGAGATAAGATCTCTCAGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGAATTGCTTTGATTTAATTTTGAGATAAGATCTCTCAGTG  1088

seq1  GAACCCTAGCTGGCCTGGAATTC  1121
      |||||||||||||||||||||||
seq2  GAACCCTAGCTGGCCTGGAATTC  1111