BAC Information

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BAC

Clone NameB6Ng01-318I10
Chromosome6 (Build37)
Map Location 120,881,504 - 121,038,352
singlet/doubletdoublet
Overlap geneMical3, LOC100043793
Upstream geneWnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
Downstream geneMinpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318I10.bB6Ng01-318I10.g
ACCGA108392GA108393
length1,1191,028
definitionB6Ng01-318I10.b B6Ng01-318I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,881,504 - 120,882,611)(121,037,346 - 121,038,352)
sequence
gaattctcaagtcccagctactgacggctaagtcaggataacacagggga
ttcaaaaaaatcacaaaccaaatgaaaagctctattctctgagaatcctt
gtctgcatacactcactgataatcaccaaatgatttgtgttcagtatcac
tcacctgaaaggaaggtgctaagtatgccttagctcaatgccaagagcag
aacaatgacttcagaaatacatttttcatttctttaaaaaaaaaaccgaa
acaaaacaaaactttattgcgcataaaccagccattccctcttgtgggtc
atgttaccatctttcaaaagaaaaaaatttttaaatgtggtactgggggt
tgaaccgtgggtcttatgcatgctgaacacacattctaccactgagctat
agtcccagcgcccccaagatttgttgcccccacctctactctcctgtccc
agtgacatatgtcttattttttaaagtctacatctgctggtcaaaattac
gttaaggatggctgttggaggcagagatatcaactgagcagggtcagaac
ctgggttggccacgctcttctttgggagccacgggctgccttctgcttgc
gctccagggacagaggttagagcctcatgtactgtccttagccttgagtt
tgggtttactcaaaagcactctagcactgtatgtgtggatgaagtgtata
catccctctcttccctgccttcaagtgaagacataattcctgggaagaac
gcatgaccagagctgtatgcatttccagaggtggagaacacttcgcgtct
cgttcccgggccactgaaatcaactgcaaactagtggttacaaactgggt
agcctaaaaaaaaaaagtgctctgtgggatctgaagtcctcgtgtcgtca
cgactggagaactgcgggacgtctcccaaaggctgggtggattttctgag
gccctcctgcgaagtgttcttgccccactttcactggaagcagcgtgtgc
ctttggagagatcacacgttcatggctgaccaggacagaggtggagggaa
catctgggtgcagaagctctgagagccagcctagagatgcaagcggtgca
tggcaatccttcttgagtc
gaattccaggtatgacccaccaagtgcgatttctattcacctttttttac
atgtatgtgtatgcatgtggaggtcagaggtcatcttggaggagtttgtt
ctctccttctaccaggtgggttctggagatgggctcatggtttccggctt
agccgcaagccccttttcttctgccgagccatcttgcagccttcttttca
tctatttgacaccatcctccgaagcatggcactgcctctggcactcccca
ctttttccaggcctcgccacgggatgccaccggacgggagcgaagacgag
tgtcaaaaacctttgactcacaggcacgcgctcccctgctccccctggta
ccaggccggatggatatgctgtgcttatgttccccacaggcagttaggat
taaaaacccacggtgggcaggtgtgggtggaggcaggatgagggtctgcc
aagaagagttggggctggcgcagcctggcgtgggcaccaggtgagcttca
cacagcagggtgtggcctgctgggcatgtgtagacttagtgggggttgcc
tgcacagcaggtatgcggggctgacgggagctgctcagcgagcattggca
tgatagggctgctttggctctggcaccgccaaaggctacatacgctgacg
ggtcaggttactgttgctgtgggaaccatgacctttgaatttcctggctt
atgcctggaattttgcttgcataatgctgcaacaacttgagtttccccct
tccccttttctcccttctcgttggcatctccttctttttttttttttttt
tttcttttttaaatatcagcaaatcaaagctctctgctgttcctcccttc
tcttgttgtagacagtcgtatgcactttcttcatgaggtgtgtgagccgt
gactgcagctcctgtgccctgggctgcccagctgatgttttctggtctcc
ctagtgagaccttttggggagggaacgagtttgggttgcttgtgcaattt
ttgggttgggacccagcttggtgctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120881504_120882611
seq2: B6Ng01-318I10.b_48_1166

seq1  GAATTCTCAAGTCCCAGCTACTGACGGCTAAGTCAGGATAACACAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGTCCCAGCTACTGACGGCTAAGTCAGGATAACACAGGGGA  50

seq1  TTCAAAAAAATCACAAACCAAATGAAAAGCTCTATTCTCTGAGAATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAATCACAAACCAAATGAAAAGCTCTATTCTCTGAGAATCCTT  100

seq1  GTCTGCATACACTCACTGATAATCACCAAATGATTTGTGTTCAGTATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATACACTCACTGATAATCACCAAATGATTTGTGTTCAGTATCAC  150

seq1  TCACCTGAAAGGAAGGTGCTAAGTATGCCTTAGCTCAATGCCAAGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAAAGGAAGGTGCTAAGTATGCCTTAGCTCAATGCCAAGAGCAG  200

seq1  AACAATGACTTCAGAAATACATTTTTCATTTCTTTAAAAAAAAAACCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACTTCAGAAATACATTTTTCATTTCTTTAAAAAAAAAACCGAA  250

seq1  ACAAAACAAAACTTTATTGCGCATAAACCAGCCATTCCCTCTTGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACTTTATTGCGCATAAACCAGCCATTCCCTCTTGTGGGTC  300

seq1  ATGTTACCATCTTTCAAAAGAAAAAAATTTTTAAATGTGGTACTGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCATCTTTCAAAAGAAAAAAATTTTTAAATGTGGTACTGGGGGT  350

seq1  TGAACCGTGGGTCTTATGCATGCTGAACACACATTCTACCACTGAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGTGGGTCTTATGCATGCTGAACACACATTCTACCACTGAGCTAT  400

seq1  AGTCCCAGCGCCCCCAAGATTTGTTGCCCCCACCTCTACTCTCCTGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCGCCCCCAAGATTTGTTGCCCCCACCTCTACTCTCCTGTCCC  450

seq1  AGTGACATATGTCTTATTTTTTAAAGTCTACATCTGCTGGTCAAAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATATGTCTTATTTTTTAAAGTCTACATCTGCTGGTCAAAATTAC  500

seq1  GTTAAGGATGGCTGTTGGAGGCAGAGATATCAACTGAGCAGGGTCAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGATGGCTGTTGGAGGCAGAGATATCAACTGAGCAGGGTCAGAAC  550

seq1  CTGGGTTGGCCACGCTCTTCTTTGGGAGCCACGGGCTGCCTTCTGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGGCCACGCTCTTCTTTGGGAGCCACGGGCTGCCTTCTGCTTGC  600

seq1  GCTCCAGGGACAGAGGTTAGAGCCTCATGTACTGTCCTTAGCCTTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGGACAGAGGTTAGAGCCTCATGTACTGTCCTTAGCCTTGAGTT  650

seq1  TGGGTTTACTCAAAAGCACTCTAGCACTGTATGTGTGGATGAAGTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTACTCAAAAGCACTCTAGCACTGTATGTGTGGATGAAGTGTATA  700

seq1  CATCCCTCTCTTCCCTGCCTTCAAGTGAAGACATAATTCCTGGGAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTCTTCCCTGCCTTCAAGTGAAGACATAATTCCTGGGAAGAAC  750

seq1  GCATGACCAGAGCTGTATGCATTTCCAGAGGTGGAGAACACTTCGCGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCAGAGCTGTATGCATTTCCAGAGGTGGAGAACACTTCGCGTCT  800

seq1  CGTTCCCGGGCCACTGAAATCAACTGCAAACTAGTGGTTACAAACT-GGT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CGTTCCCGGGCCACTGAAATCAACTGCAAACTAGTGGTTACAAACTGGGT  850

seq1  AGCCT-AAAAAAAAAAGTGCTCTGTGGGATTCTGAAGTCCTCGTGTCGTC  898
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCTAAAAAAAAAAAGTGCTCTGTGGGA-TCTGAAGTCCTCGTGTCGTC  899

seq1  ACGACTGGAGAACTGCGGGACGTCTCCC-AAGGCT-GGTGGA-TTTCTGA  945
      |||||||||||||||||||||||||||| |||||| |||||| |||||||
seq2  ACGACTGGAGAACTGCGGGACGTCTCCCAAAGGCTGGGTGGATTTTCTGA  949

seq1  GGCCCTCCTGCGAAGTGTTCT--GCCCACTTTCACTGGAAGCAGCGTGTG  993
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  GGCCCTCCTGCGAAGTGTTCTTGCCCCACTTTCACTGGAAGCAGCGTGTG  999

seq1  -CTTTGGAGAGATCAACACG-TCATGGCTGACCAGGACAGAGGTGGAAGG  1041
       ||||||||||||| ||||| ||||||||||||||||||||||||| |||
seq2  CCTTTGGAGAGATC-ACACGTTCATGGCTGACCAGGACAGAGGTGG-AGG  1047

seq1  GAACATCT-GGTGCAG-AGCTCTGAGAGGCAG-CTAGAGATGC-AGC-GT  1086
      |||||||| ||||||| ||||||||||| ||| |||||||||| ||| ||
seq2  GAACATCTGGGTGCAGAAGCTCTGAGAGCCAGCCTAGAGATGCAAGCGGT  1097

seq1  GCCCCTGCATCCTTCTTGAGTC  1108
      ||      ||||||||||||||
seq2  GCATGGCAATCCTTCTTGAGTC  1119

seq1: chr6_121037346_121038352
seq2: B6Ng01-318I10.g_68_1095 (reverse)

seq1  GGGAGCAC--AGCT-GGTCCC-ACCCAAAAA-TGCAC-AGCA--CCCAAC  42
      ||||||||  |||| |||||| ||||||||| ||||| ||||  || |||
seq2  GGGAGCACCAAGCTGGGTCCCAACCCAAAAATTGCACAAGCAACCCAAAC  50

seq1  TCGT--CCTTCCC-AAAGGTCTCACTA-GGAGACCAG-AAACATCAGCTG  87
      ||||  ||| ||| ||||||||||||| ||||||||| ||||||||||||
seq2  TCGTTCCCTCCCCAAAAGGTCTCACTAGGGAGACCAGAAAACATCAGCTG  100

seq1  GGCAGCCCAGGGCACA-GAGCTGCAGTCAC-GCTCACACACCTCATGAAG  135
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GGCAGCCCAGGGCACAGGAGCTGCAGTCACGGCTCACACACCTCATGAAG  150

seq1  AAAGTGCATACGACTGTCTACAACAAGAGAA-GGAGGAACAGCAGAGAGC  184
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAGTGCATACGACTGTCTACAACAAGAGAAGGGAGGAACAGCAGAGAGC  200

seq1  TTTGA-TTGCTGATATTTAAAAAAG---AAAAAAAAAAAAAAAAGAAGGA  230
      ||||| |||||||||||||||||||   ||||||||||||||||||||||
seq2  TTTGATTTGCTGATATTTAAAAAAGAAAAAAAAAAAAAAAAAAAGAAGGA  250

seq1  GATGCCAACGAGAAGGGAG-AAAGGGGAAGGGGGAAACTCAAGTTGTTGC  279
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATGCCAACGAGAAGGGAGAAAAGGGGAAGGGGGAAACTCAAGTTGTTGC  300

seq1  AGCATTATGCAAGCAAAATTCCAGGCATAAGCCAGGAAATTCAAAGGTCA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATGCAAGCAAAATTCCAGGCATAAGCCAGGAAATTCAAAGGTCA  350

seq1  TGGTTCCCACAGCAACAGTAACCTGACCCGTCAGCGTATGTAGCCTTTGG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCACAGCAACAGTAACCTGACCCGTCAGCGTATGTAGCCTTTGG  400

seq1  CGGTGCCAGAGCCAAAGCAGCCCTATCATGCCAATGCTCGCTGAGCAGCT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCAGAGCCAAAGCAGCCCTATCATGCCAATGCTCGCTGAGCAGCT  450

seq1  CCCGTCAGCCCCGCATACCTGCTGTGCAGGCAACCCCCACTAAGTCTACA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCAGCCCCGCATACCTGCTGTGCAGGCAACCCCCACTAAGTCTACA  500

seq1  CATGCCCAGCAGGCCACACCCTGCTGTGTGAAGCTCACCTGGTGCCCACG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAGCAGGCCACACCCTGCTGTGTGAAGCTCACCTGGTGCCCACG  550

seq1  CCAGGCTGCGCCAGCCCCAACTCTTCTTGGCAGACCCTCATCCTGCCTCC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCGCCAGCCCCAACTCTTCTTGGCAGACCCTCATCCTGCCTCC  600

seq1  ACCCACACCTGCCCACCGTGGGTTTTTAATCCTAACTGCCTGTGGGGAAC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCTGCCCACCGTGGGTTTTTAATCCTAACTGCCTGTGGGGAAC  650

seq1  ATAAGCACAGCATATCCATCCGGCCTGGTACCAGGGGGAGCAGGGGAGCG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACAGCATATCCATCCGGCCTGGTACCAGGGGGAGCAGGGGAGCG  700

seq1  CGTGCCTGTGAGTCAAAGGTTTTTGACACTCGTCTTCGCTCCCGTCCGGT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTGTGAGTCAAAGGTTTTTGACACTCGTCTTCGCTCCCGTCCGGT  750

seq1  GGCATCCCGTGGCGAGGCCTGGAAAAAGTGGGGAGTGCCAGAGGCAGTGC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCCGTGGCGAGGCCTGGAAAAAGTGGGGAGTGCCAGAGGCAGTGC  800

seq1  CATGCTTCGGAGGATGGTGTCAAATAGATGAAAAGAAGGCTGCAAGATGG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCGGAGGATGGTGTCAAATAGATGAAAAGAAGGCTGCAAGATGG  850

seq1  CTCGGCAGAAGAAAAGGGGCTTGCGGCTAAGCCGGAAACCATGAGCCCAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCAGAAGAAAAGGGGCTTGCGGCTAAGCCGGAAACCATGAGCCCAT  900

seq1  CTCCAGAACCCACCTGGTAGAAGGAGAGAACAAACTCCTCCAAGATGACC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAACCCACCTGGTAGAAGGAGAGAACAAACTCCTCCAAGATGACC  950

seq1  TCTGACCTCCACATGCATACACATACATGTAAAAAAAGGTGAATAGAAAT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCACATGCATACACATACATGTAAAAAAAGGTGAATAGAAAT  1000

seq1  CGCACTTGGTGGGTCATACCTGGAATTC  1007
      ||||||||||||||||||||||||||||
seq2  CGCACTTGGTGGGTCATACCTGGAATTC  1028