BAC Information

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BAC

Clone NameB6Ng01-318M07
Chromosome6 (Build37)
Map Location 29,830,025 - 29,937,215
singlet/doubletdoublet
Overlap gene4631427C17Rik, D330017J20Rik, 1700023L04Rik
Upstream geneSnd1, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream gene1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M07.bB6Ng01-318M07.g
ACCGA108571GA108572
length1,135563
definitionB6Ng01-318M07.b B6Ng01-318M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,830,025 - 29,831,144)(29,936,647 - 29,937,215)
sequence
gaattcaacttcattccccaacactacaaaaatagataaacctatgttca
gtaatacataaatctaaaccgatagattagaaacttgagattcatttggt
tctcacccagctcagttaagcagcctgcagagtgtacatgacatttgact
aggctgtgatgtggagcaggcacttcagtaggtcagagtttccctgtgaa
gcatgtggagatcctgatagaaggaaaacaagtgggcttgggagatgatg
agactgccagcttgaatggaccaagaacgtatttctggtttcctcttttc
cctccaatagtcctatttttagcaactcttacattcttgctgcttgtcct
ttgagccaagaagagcagaatagccctacaggaaaatgtatggataaggg
gacttgaaggcaatattaaccagtgaaagaagttaatccaaagactagag
caaaaggaaatcatttagaattgtcccttttatagcatgtaacagttttc
ctctgttcttttgattattcttagggtttcccgtctttgcctggaaagga
gaatcagaagatgacttttggtggtgcattgacagatgcgtgaatgtgga
gggctggcagccaaacatggtgggtcagagtctgaatgcagttcatgagg
agagagctgatgatgggaaagacggggtcgggctttcccaagaaaagaaa
ggaaagtggatccatccctgtccagtgtacacgggtatccagcaaagttc
agggagtcttcttaggatacctctagatactgaactttataacagcaaag
aatcttacttagctcagtgtggtggtatgcatctgtaacccacatttggg
aagccaagacagccaggtcatgagttcgagaccagccagaaagcttttgc
atttatcagtaacattaaaacgatacccaggaatcacacatgactgacta
aaatgcagaagtgaccacctttctgtccccttttcacagttgctccagta
acagtatgataatcacaacaaaacagaacatgggaagcacagtcgacctt
gttggatccaagaagacaccttaagaaccttaggatctacacaccactga
gttcttagtatggccttgggagacacttcaagtgc
cttagcctaaactattatttggcacaccgaatggatgaaccatttgctaa
atgaataatgaattacaatcagatgggtgtgttggttcaaatatgaaatg
tctctaacaggttcacatgttgattgtttattcccaagagggccttgagg
agactttaggggggtagaactaggtagcagaagtaggtctttaggggtgg
gtctcacctggccctaccctctttgctttctgaccttccctgttggactc
tccgctgccctaagctctgccttctccactacgtgagacggaaacctgag
tgtgaccccgaataagccctccttctcttgaactgttgtttcaggtgttt
ggtcatagccacctgaagaaataaatacagacactttgcggttggagagg
ctatgcaaagataaagggaccaaccaagatcagagtggctgtccacaagc
aaatggggagtagggcagggtgggatggaaagggggaggggcgatctggt
ctggaaagcaagtgacagcatctttggccttcagcctctgtaaaattatc
aagctggacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29830025_29831144
seq2: B6Ng01-318M07.b_45_1179

seq1  GAATTCAACTTCATTCCCCAACACTACAAAAATAGATAAACCTATGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCATTCCCCAACACTACAAAAATAGATAAACCTATGTTCA  50

seq1  GTAATACATAAATCTAAACCGATAGATTAGAAACTTGAGATTCATTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACATAAATCTAAACCGATAGATTAGAAACTTGAGATTCATTTGGT  100

seq1  TCTCACCCAGCTCAGTTAAGCAGCCTGCAGAGTGTACATGACATTTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCAGCTCAGTTAAGCAGCCTGCAGAGTGTACATGACATTTGACT  150

seq1  AGGCTGTGATGTGGAGCAGGCACTTCAGTAGGTCAGAGTTTCCCTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGATGTGGAGCAGGCACTTCAGTAGGTCAGAGTTTCCCTGTGAA  200

seq1  GCATGTGGAGATCCTGATAGAAGGAAAACAAGTGGGCTTGGGAGATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGAGATCCTGATAGAAGGAAAACAAGTGGGCTTGGGAGATGATG  250

seq1  AGACTGCCAGCTTGAATGGACCAAGAACGTATTTCTGGTTTCCTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCAGCTTGAATGGACCAAGAACGTATTTCTGGTTTCCTCTTTTC  300

seq1  CCTCCAATAGTCCTATTTTTAGCAACTCTTACATTCTTGCTGCTTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATAGTCCTATTTTTAGCAACTCTTACATTCTTGCTGCTTGTCCT  350

seq1  TTGAGCCAAGAAGAGCAGAATAGCCCTACAGGAAAATGTATGGATAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAAGAAGAGCAGAATAGCCCTACAGGAAAATGTATGGATAAGGG  400

seq1  GACTTGAAGGCAATATTAACCAGTGAAAGAAGTTAATCCAAAGACTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAGGCAATATTAACCAGTGAAAGAAGTTAATCCAAAGACTAGAG  450

seq1  CAAAAGGAAATCATTTAGAATTGTCCCTTTTATAGCATGTAACAGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAATCATTTAGAATTGTCCCTTTTATAGCATGTAACAGTTTTC  500

seq1  CTCTGTTCTTTTGATTATTCTTAGGGTTTCCCGTCTTTGCCTGGAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTTTTGATTATTCTTAGGGTTTCCCGTCTTTGCCTGGAAAGGA  550

seq1  GAATCAGAAGATGACTTTTGGTGGTGCATTGACAGATGCGTGAATGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAAGATGACTTTTGGTGGTGCATTGACAGATGCGTGAATGTGGA  600

seq1  GGGCTGGCAGCCAAACATGGTGGGTCAGAGTCTGAATGCAGTTCATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCAGCCAAACATGGTGGGTCAGAGTCTGAATGCAGTTCATGAGG  650

seq1  AGAGAGCTGATGATGGGAAAGACGGGGTCGGGCTTTCCCAAGAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGATGATGGGAAAGACGGGGTCGGGCTTTCCCAAGAAAAGAAA  700

seq1  GGAAAGTGGATCCATCCCTGTCCAGTGTACACGGGTATCCAGCAAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGGATCCATCCCTGTCCAGTGTACACGGGTATCCAGCAAAGTTC  750

seq1  AGGGAGTCTTCTTAGGATACCTCTAGATACTGAACTTTATAACAGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCTTCTTAGGATACCTCTAGATACTGAACTTTATAACAGCAAAG  800

seq1  AATCTTACTTAGCTCAGTGTGGTGGTATGCATCTGTAACCCACATTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACTTAGCTCAGTGTGGTGGTATGCATCTGTAACCCACATTTGGG  850

seq1  AAGCCAAGACAGCCAGGTCATGAGTTCGAGACCAGCCAGAAAGCTTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGACAGCCAGGTCATGAGTTCGAGACCAGCCAGAAAGCTTTTGC  900

seq1  ATTTATCAGTAACATTAAAACGATACCCAGGAATCACACATGACTGACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAGTAACATTAAAACGATACCCAGGAATCACACATGACTGACTA  950

seq1  AAATGCAGAAGTGA-CACCTTTCTGTCCCCTTTTCACAGTTGCTCCAGTA  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAAGTGACCACCTTTCTGTCCCCTTTTCACAGTTGCTCCAGTA  1000

seq1  ACAGTATGATAATCACAAC-AAACAG-ACATGGAAAGCACAGCCGA-CTT  1046
      ||||||||||||||||||| |||||| |||||| |||||||| ||| |||
seq2  ACAGTATGATAATCACAACAAAACAGAACATGGGAAGCACAGTCGACCTT  1050

seq1  G-TGGATCCA--GAGACA-CTTAGGAACC-TAGAATCTACA---CACTGA  1088
      | ||||||||   ||||| |||| ||||| ||| |||||||   ||||||
seq2  GTTGGATCCAAGAAGACACCTTAAGAACCTTAGGATCTACACACCACTGA  1100

seq1  GTTCTTAGTATG--CTT-GGAG-CACTTTCAAGTGC  1120
      ||||||||||||  ||| |||| ||| |||||||||
seq2  GTTCTTAGTATGGCCTTGGGAGACAC-TTCAAGTGC  1135

seq1: chr6_29936647_29937215
seq2: B6Ng01-318M07.g_68_636 (reverse)

seq1  AAATGTCCAGCTTG-TTAGTTTACAGAGGCTGAAGGCCAAAGCTGCTCTT  49
      |||||||||||||| | | ||||||||||||||||||||||| ||||  |
seq2  AAATGTCCAGCTTGATAATTTTACAGAGGCTGAAGGCCAAAGATGCT-GT  49

seq1  CACTTGCTTTCCAGACCTGATCGCCCCTCCCCCTTTCCATCCCACCCTGC  99
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTTGCTTTCCAGACCAGATCGCCCCTCCCCCTTTCCATCCCACCCTGC  99

seq1  CCTACTCCCCATTTGCTTGTGGACAGCCACTCTGATCTTGGTTGGTCCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCCCATTTGCTTGTGGACAGCCACTCTGATCTTGGTTGGTCCCT  149

seq1  TTATCTTTGCATAGCCTCTCCAACCGCAAAGTGTCTGTATTTATTTCTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGCATAGCCTCTCCAACCGCAAAGTGTCTGTATTTATTTCTTC  199

seq1  AGGTGGCTATGACCAAACACCTGAAACAACAGTTCAAGAGAAGGAGGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTATGACCAAACACCTGAAACAACAGTTCAAGAGAAGGAGGGCT  249

seq1  TATTCGGGGTCACACTCAGGTTTCCGTCTCACGTAGTGGAGAAGGCAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGGGTCACACTCAGGTTTCCGTCTCACGTAGTGGAGAAGGCAGAG  299

seq1  CTTAGGGCAGCGGAGAGTCCAACAGGGAAGGTCAGAAAGCAAAGAGGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCAGCGGAGAGTCCAACAGGGAAGGTCAGAAAGCAAAGAGGGTA  349

seq1  GGGCCAGGTGAGACCCACCCCTAAAGACCTACTTCTGCTACCTAGTTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGTGAGACCCACCCCTAAAGACCTACTTCTGCTACCTAGTTCTA  399

seq1  CCCCCCTAAAGTCTCCTCAAGGCCCTCTTGGGAATAAACAATCAACATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTAAAGTCTCCTCAAGGCCCTCTTGGGAATAAACAATCAACATGT  449

seq1  GAACCTGTTAGAGACATTTCATATTTGAACCAACACACCCATCTGATTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTAGAGACATTTCATATTTGAACCAACACACCCATCTGATTGT  499

seq1  AATTCATTATTCATTTAGCAAATGGTTCATCCATTCGGTGTGCCAAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTATTCATTTAGCAAATGGTTCATCCATTCGGTGTGCCAAATAA  549

seq1  TAGTTTAGGCTAAGGAATTC  569
      ||||||||||||||||||||
seq2  TAGTTTAGGCTAAGGAATTC  569