BAC Information

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BAC

Clone NameB6Ng01-318P15
Chromosome6 (Build37)
Map Location 46,446,926 - 46,573,992
singlet/doubletdoublet
Overlap geneCntnap2, Rbpsuh-rs3
Upstream genenone
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P15.bB6Ng01-318P15.g
ACCGA108727GA108728
length1,0021,078
definitionB6Ng01-318P15.b B6Ng01-318P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,446,926 - 46,447,923)(46,572,915 - 46,573,992)
sequence
gaattcaatggatttagaagactcattaaaggaaaaggcttttccatttc
catgtgttgtttgaagcaaggatgcagatggctttattacacatttcatt
cagcaagatcgcatttgtcacagggacatatacttcactcagtaattctt
tcaacacattgcttcaaaagaagtctttttgttgaaagaaatgaacacat
actttatcaaatcttccaccacaccaatattactctgccatatttccttt
tccaattctttgtgtgtgtttttgtgtggatgcatatgagtgtgtatgtg
catgtgtcttcacatatgtgtgtgcctgcatacatggatcacaaaaaaaa
taaataaataaaaccctcagatgtaattctctgtcatcatacaccaattt
ttattgactcaatttctcactgaacctggatctcacaattaggctagatt
gattggacagcaagctccagggatctagttatctacacctctccagtact
tggaccatacatatacagtcctatatgggaccatacatatacagtcctat
atgggctctgagattgaactcagatcaacatgcttgtgagtcaagaactt
ttctgactgatgtttgttctcacccctcctgtactagcatttttttttgt
tcttgtgtgtgtgtatgtgttgaattcttattattttctttatttatatt
ccattggttactcccccttgccttcccctcccacaattcctcatcctatt
ctttctcatccttgcctttgagaggctgtaccctgccactagtcctctcc
cttccctggagcctcaagtctctccaggagtcagtacatcttctccaact
gaggcctgaataggcagacctctgcttatatatgtgtctgtgacctcgaa
ccatgtattctctctgtcatggacaagcatttttacaaacgatggtgtag
gctgactatttgtttagtgagcttagttggtaaacatttcgatgtaagaa
ga
gaattctttggaaactaatagtttcttttcaaaaaaaaaatctcagggtg
gaaataacactgcccttcacagctaccataggcacatggctatgaccaga
aaaaatgaagtcctcagatgagcacaaatctcaactataaggcctttgcc
tagcatgggtgagtctcacagttaggtccccagcactgccaaagaaactg
taaaaaatgtggaaataaactgttacattaatctgtgaaaccctattata
gaggtccttggtgtacctctttccttacctcaaatgtataaatgcaggaa
ccccagttatgatcagggcgagagatgttgggtggtagcttttaggaaag
ctgttatttgggtcctgtgggcttctctgagcacatggaagagagtaata
ttagtgattatcttgtgagagatacattttcagtaagagaagtaaaatag
ctatcacatgtcataatttcccaggagagaggctttcagcagatgtttgc
agatttgcatcttgtcatcacatctgtatttcaacttctgcactaactct
ctcctcaaattgccagttcttacagtaggggattcacaaagcctatgtag
aagaattatcttcttgtatgtgcttaattaatttttcaattttacattgt
caaattctaagagactataaaataagcccatataaagtttctgttggttt
tatcaccttaatggtaatgctttccttttctacttattttaagctaatat
gttttaggttcatttcttaatggatttttaaaaattttaatacatctttc
atactatatattgattatggttttcaccccccccccaaatcctctcagtc
ctccctacttccctcactcccaaatctatacccttttctctgtctgtctg
tctgtctgtctgtctgtctgtctgattgtctgtcagtctctgtctctcat
tattatataaactgacatcttaaataataactaattagtaagatataaaa
taaaccaaccttcttataagtgcctaatatgtatttccatgactagtagc
ttaacaaaaaatgaaccatatttacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46446926_46447923
seq2: B6Ng01-318P15.b_43_1044

seq1  GAATTCAAATGGATTTAGAAGACTCATTAAAGGAAAAGGCTTTTCCATTT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-AATGGATTTAGAAGACTCATTAAAGGAAAAGGCTTTTCCATTT  49

seq1  CCATGTGTTGTTTGAAGCAAGGATGCAGATGGCTTTATTACACATTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTGTTTGAAGCAAGGATGCAGATGGCTTTATTACACATTTCAT  99

seq1  TCAGCAAGATCGCATTTGTCACAGGGACATAGACTTCACTCAGTAATTCT  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGCAAGATCGCATTTGTCACAGGGACATATACTTCACTCAGTAATTCT  149

seq1  TTCAACAGATTGCTTCAAAAGAAGTCTTTTTGTTGAGAGAAATGAACACA  200
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  TTCAACACATTGCTTCAAAAGAAGTCTTTTTGTTGAAAGAAATGAACACA  199

seq1  TACTTTATCAAATCTTCCACCACACCAATATTACTCTGCCATATTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATCAAATCTTCCACCACACCAATATTACTCTGCCATATTTCCTT  249

seq1  TTCCAATTCTTTGTGTGTGTTTTTGTGTGGATGCATATGAGTGTGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCTTTGTGTGTGTTTTTGTGTGGATGCATATGAGTGTGTATGT  299

seq1  GCATGTGTCTTCACATATGTGTGTGCCTGCATACATGGATCACAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTTCACATATGTGTGTGCCTGCATACATGGATCACAAAAAAA  349

seq1  ATAAATAAATAAAACCCTCAGATGTAATTCTCTGTCATCATACACCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAAACCCTCAGATGTAATTCTCTGTCATCATACACCAATT  399

seq1  TTTATTGACTCAGTTTCTCACTGAACCTGGATCTCACAATTAGGCTAGAT  450
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATTGACTCAATTTCTCACTGAACCTGGATCTCACAATTAGGCTAGAT  449

seq1  TGATTGGACAGCAAGCTCCAGGGATCTAGTTATCTACACCTCTCCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGACAGCAAGCTCCAGGGATCTAGTTATCTACACCTCTCCAGTAC  499

seq1  TTGGACCATACATATACAGTCCTATATGGGACCATACATATACAGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCATACATATACAGTCCTATATGGGACCATACATATACAGTCCTA  549

seq1  TATGGGCTCTGAGATTGAACTCAGATCAACATGCTTGTGAGTCAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTCTGAGATTGAACTCAGATCAACATGCTTGTGAGTCAAGAACT  599

seq1  TTTCTGACTGATGTTTGTTCTCACCCCTCCTGTACTAGCATTTTTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACTGATGTTTGTTCTCACCCCTCCTGTACTAGCATTTTTTTTTG  649

seq1  TTCTTGTGTGTGTGTATGTGTTGAATTCTTATTATTTTCTTTATTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTGTGTGTATGTGTTGAATTCTTATTATTTTCTTTATTTATAT  699

seq1  TCCATTGGTTACTCCCCCTTGCCTTCCCCTCCCACAGTTCCTCATCCTAT  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCATTGGTTACTCCCCCTTGCCTTCCCCTCCCACAATTCCTCATCCTAT  749

seq1  TCTTTCTCATCCTTGCCTTTGAGAGGCTGTACCCTGCCACTAGTCCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCATCCTTGCCTTTGAGAGGCTGTACCCTGCCACTAGTCCTCTC  799

seq1  CCTTCCCTGGAGCCTCAAGTCTCTCCAGGAGTAAGTACATCTTCTCCAAC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTCCCTGGAGCCTCAAGTCTCTCCAGGAGTCAGTACATCTTCTCCAAC  849

seq1  TGAGGCCTGAATAGGCAGACCTCTGCTTATATTTGTGTCTGGGTCCTCGA  900
      |||||||||||||||||||||||||||||||| |||||||| | ||||||
seq2  TGAGGCCTGAATAGGCAGACCTCTGCTTATATATGTGTCTGTGACCTCGA  899

seq1  ACAATGTATTCTCTCTGTCATTGACAAGCATTTTAAGAAACGATGGT-TT  949
      || |||||||||||||||||| |||||||||||| | |||||||||| | 
seq2  ACCATGTATTCTCTCTGTCATGGACAAGCATTTTTACAAACGATGGTGTA  949

seq1  GGCTGACAATTTGTTT-GTGAGCATA-TTGGGAAACATTT-GATGT-AGA  995
      ||||||| |||||||| |||||| || |||| |||||||| ||||| |||
seq2  GGCTGACTATTTGTTTAGTGAGCTTAGTTGGTAAACATTTCGATGTAAGA  999

seq1  AGA  998
      |||
seq2  AGA  1002

seq1: chr6_46572915_46573992
seq2: B6Ng01-318P15.g_66_1143 (reverse)

seq1  GGTGT-AATATGG-TCATTTTTTTGTTAGCTACCTAGTCAT-GAAATACA  47
      ||||| ||||||| |||||||||  | ||||| |||||||| ||||||||
seq2  GGTGTAAATATGGTTCATTTTTTGTTAAGCTA-CTAGTCATGGAAATACA  49

seq1  TATTTAGCACTTTATAAGAAGGTTTGTTTATTTTTATATTCTTACTAATT  97
      ||||  |||| ||||||||||||| ||||| ||||||| |||||||||||
seq2  TATTAGGCAC-TTATAAGAAGGTTGGTTTA-TTTTATA-TCTTACTAATT  96

seq1  AGTTATTATTTAAGATGTCAGTTTATATAATAATGAGAGACAGAGACTGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTATTTAAGATGTCAGTTTATATAATAATGAGAGACAGAGACTGA  146

seq1  CAGACAATCAGACAGACAGACAGACAGACAGACAGACAGACAGAG-AAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGACAATCAGACAGACAGACAGACAGACAGACAGACAGACAGAGAAAAG  196

seq1  GGTATAGATTTGGGAGTGAGGGAAGTAGGGAGGACCTGAGAGGATTT-GG  245
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  GGTATAGATTTGGGAGTGAGGGAAGTAGGGAGGA-CTGAGAGGATTTGGG  245

seq1  GGGGGGGTGAAAACCATAATCAATATATAGTATGAAAGATGTATTAAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTGAAAACCATAATCAATATATAGTATGAAAGATGTATTAAAAT  295

seq1  TTTTAAAAATCCATTAAGAAATGAACCTAAAACATATTAGCTTAAAATAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATCCATTAAGAAATGAACCTAAAACATATTAGCTTAAAATAA  345

seq1  GTAGAAAAGGAAAGCATTACCATTAAGGTGATAAAACCAACAGAAACTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAGGAAAGCATTACCATTAAGGTGATAAAACCAACAGAAACTTT  395

seq1  ATATGGGCTTATTTTATAGTCTCTTAGAATTTGACAATGTAAAATTGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCTTATTTTATAGTCTCTTAGAATTTGACAATGTAAAATTGAAA  445

seq1  AATTAATTAAGCACATACAAGAAGATAATTCTTCTACATAGGCTTTGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAAGCACATACAAGAAGATAATTCTTCTACATAGGCTTTGTGA  495

seq1  ATCCCCTACTGTAAGAACTGGCAATTTGAGGAGAGAGCTAGTGCAGAAGT  545
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCCCCTACTGTAAGAACTGGCAATTTGAGGAGAGAGTTAGTGCAGAAGT  545

seq1  TGAAATACAGATGTGATGACAAGATGCAAATCTGCAAACATCTGCTGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACAGATGTGATGACAAGATGCAAATCTGCAAACATCTGCTGAAA  595

seq1  GCCTCTCTCCTGGGAAATTATGACATCTGATAGCTATTTTACTTCTCTTA  645
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCTCTCTCCTGGGAAATTATGACATGTGATAGCTATTTTACTTCTCTTA  645

seq1  CTGAAAATGTATCTCTCACAAGATAATCACTAATATTACTCTCTTCCATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATGTATCTCTCACAAGATAATCACTAATATTACTCTCTTCCATG  695

seq1  TGCTCAGAGAAGCCCACAGGACCCAAATAACAGCTTTCCTAAAAGCTACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAGAAGCCCACAGGACCCAAATAACAGCTTTCCTAAAAGCTACC  745

seq1  ACCCAACATCTCTCGCCCTGATCATAACTGGGGTTCCTGCATTTATACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACATCTCTCGCCCTGATCATAACTGGGGTTCCTGCATTTATACAT  795

seq1  TTGAGGTAAGGAAAGAGGTACACCAAGGACCTCTATAATAGGGTTTCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTAAGGAAAGAGGTACACCAAGGACCTCTATAATAGGGTTTCACA  845

seq1  GATTAATGTAACAGTTTATTTCCACATTTTTTACAGCTTCTTTGGCAGTG  895
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATTAATGTAACAGTTTATTTCCACATTTTTTACAGTTTCTTTGGCAGTG  895

seq1  CTGGGGACCTAACTGTGAGACTCACCCATGCTAGGCAAAGGCCTTATAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGGGACCTAACTGTGAGACTCACCCATGCTAGGCAAAGGCCTTATAGT  945

seq1  TGAGATTTGTGCTCATCTGAGGACTTCATTTCTCCTGGTCATAGCCATGT  995
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  TGAGATTTGTGCTCATCTGAGGACTTCATTTTTTCTGGTCATAGCCATGT  995

seq1  GCCTATGGTAGCTGTGAAGGGCAGTGTTATTTCCACCCTGAGATTTTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGTAGCTGTGAAGGGCAGTGTTATTTCCACCCTGAGATTTTTTT  1045

seq1  TCTGAAAAGAAACTATTAGTTTCCAAAGAATTC  1078
      | |||||||||||||||||||||||||||||||
seq2  TTTGAAAAGAAACTATTAGTTTCCAAAGAATTC  1078