BAC Information

Click to search

BAC

Clone NameB6Ng01-319M14
Chromosome6 (Build37)
Map Location 110,344,715 - 110,345,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M14.bB6Ng01-319M14.g
ACCGA109331GA109332
length1,126950
definitionB6Ng01-319M14.b B6Ng01-319M14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagccatgtaccacataacagggctcctatcatttatggactgta
catgatagtgggacaataacattataatggaactagagagttgctattct
cttgagacatcatagacacaatattagcaaagcaaaatataatatgcata
tctttatgttgcccctctgaatgtgcctgacaaactgctagccctataaa
attatgtatattcatagttttatgcattggattatacttgataaatagct
gtgttactgcatgatgtggcaactggagtttctattcttcttttaaagta
tactcatacttatgaaaaagaaagtatacttttacaagcatgccacatta
ttctggaaggagctgcatgcattcaaatgtttactgtaactgcatcaaga
cagtggatgatatataccacataggtgtgcttaggtacactcaggcttgt
tcacacaatgatggaatcacttactgatacatttatcagaccttgttccc
atcattaaatatttcacaactgccctaaaccttcactttagtcataaatc
ctattcaaaataaaactattttaatgattcagtgacatattaattacagt
ggacctacatctaagtcagcagttaggatttacagtcatgatttaacatg
aaatgtaagtgaagttgcccttagaactccatttggttgtacattaagtg
ctgggcaaataaatttgtatatagaattcaaaaagcatgacatgaggagg
gcatacatatttaaagtagactcatgtattacagaatgcttatactgaca
tattctcagctacagatgggtgctaattagtttgcacagccaattaggag
cacagataattagtgtcccctggtcaggattctgcttgtcttagacattt
caggaatgggcagacagagccaacaagtcacttgagttcttcccttaagt
ttctgccttcccaattgtctacatgtagaaaattctagaaaaatgaacag
ttgatgagtctctttgtctagcctactttcttatttatagagatgataca
gagattatttatatcatgtatgtgtacctttattggctacttccaccaca
gcatcctccctccaatgggctcattc

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgaacaaggctcttataaacatagtggagcatgtgtccttgtaatact
gtgaaatgtcttttgggtatatgcccaacattggtaaggctgggtcttca
ggtagaactatttccaatttttgatgaaattccatatttatttccagagt
agttgtacaagtttgcaatcccatcgagtatgggatagtgttctttttcc
acatcctctccagcatgcactgtcacttgaggtttttttttttttttttt
ttttttttttttatcttaactagtcttaatggtgaagatagaattttatg
gtcattttgatttgctatgggatgttaaacatttctttaagtgcatctca
gccattcgagattcctccgttgagaatttttctgtttaacactgtacccc
atttttaattggattattttatttttaactatagctccttgatctctaaa
atattttgggatattagccatctatatgatatagggtagtgaaatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110344715_110345849
seq2: B6Ng01-319M14.b_48_1173

seq1  GAATTCAGCCATGTACCACATAACAGGGCTCCTATCATTTATGGACTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCATGTACCACATAACAGGGCTCCTATCATTTATGGACTGTA  50

seq1  CATGATAGTGGGACAATAACATTATAATGGAACTAGAGAGTTGCTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGTGGGACAATAACATTATAATGGAACTAGAGAGTTGCTATTCT  100

seq1  CTTGAGACATCATAGACACAATATTAGCAAAGCAAAATATAATATGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACATCATAGACACAATATTAGCAAAGCAAAATATAATATGCATA  150

seq1  TCTTTATGTTGCCCCTCTGAATGTGCCTGACAAACTGCTAGCCCTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTTGCCCCTCTGAATGTGCCTGACAAACTGCTAGCCCTATAAA  200

seq1  ATTATGTATATTCATAGTTTTATGCATTGGATTATACTTGATAAATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTATATTCATAGTTTTATGCATTGGATTATACTTGATAAATAGCT  250

seq1  GTGTTACTGCATGATGTGGCAACTGGAGTTTCTATTCTTCTTTTAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTGCATGATGTGGCAACTGGAGTTTCTATTCTTCTTTTAAAGTA  300

seq1  TACTCATACTTATGAAAAAGAAAGTATACTTTTACAAGCATGCCACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATACTTATGAAAAAGAAAGTATACTTTTACAAGCATGCCACATTA  350

seq1  TTCTGGAAGGAGCTGCATGCATTCAAATGTTTACTGTAACTGCATCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGGAGCTGCATGCATTCAAATGTTTACTGTAACTGCATCAAGA  400

seq1  CAGTGGATGATATATACCACATAGGTGTGCTTAGGTACACTCAGGCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGATATATACCACATAGGTGTGCTTAGGTACACTCAGGCTTGT  450

seq1  TCACACAATGATGGAATCACTTACTGATACATTTATCAGACCTTGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATGATGGAATCACTTACTGATACATTTATCAGACCTTGTTCCC  500

seq1  ATCATTAAATATTTCACAACTGCCCTAAACCTTCACTTTAGTCATAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAATATTTCACAACTGCCCTAAACCTTCACTTTAGTCATAAATC  550

seq1  CTATTCAAAATAAAACTATTTTAATGATTCAGTGACATATTAATTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAAATAAAACTATTTTAATGATTCAGTGACATATTAATTACAGT  600

seq1  GGACCTACATCTAAGTCAGCAGTTAGGATTTACAGTCATGATTTAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTACATCTAAGTCAGCAGTTAGGATTTACAGTCATGATTTAACATG  650

seq1  AAATGTAAGTGAAGTTGCCCTTAGAACTCCATTTGGTTGTACATTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGTGAAGTTGCCCTTAGAACTCCATTTGGTTGTACATTAAGTG  700

seq1  CTGGGCAAATAAATTTGTATATAGAATTCAAAAAGCATGACATGAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAATAAATTTGTATATAGAATTCAAAAAGCATGACATGAGGAGG  750

seq1  GCATACATATTTAAAGTAGACTCATGTATTACAGAATGCTTATACTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATATTTAAAGTAGACTCATGTATTACAGAATGCTTATACTGACA  800

seq1  TATTCTCAGCTACAGATGGGTGCTAATTAGTTTGCACAGCCAATTAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAGCTACAGATGGGTGCTAATTAGTTTGCACAGCCAATTAGGAG  850

seq1  CACAGATAATTAGTGTCCCCTGGTCAGGATTCTGCTTGTCTTAGACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAATTAGTGTCCCCTGGTCAGGATTCTGCTTGTCTTAGACATTT  900

seq1  CAGGAATGGGCAGACAGAGCCAACAAGTCACTTGAGTTCTTCCCTTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGGGCAGACAGAGCCAACAAGTCACTTGAGTTCTTCCCTTAAGT  950

seq1  TTCTGCCTTCCCAATTGTCTACATGTAGAAAATTCTAAGAAAAATGAACA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTCTGCCTTCCCAATTGTCTACATGTAGAAAATTCT-AGAAAAATGAAC-  998

seq1  AGTTGAATGAGTCTTCTTTGTCTAGCCTTACTTCCTTATTTATAGAGATG  1050
      ||||| ||||||| ||||||||||||| ||||| ||||||||||||||||
seq2  AGTTG-ATGAGTC-TCTTTGTCTAGCC-TACTTTCTTATTTATAGAGATG  1045

seq1  ATACAGAGATTATTTATATCATGTATGTGTA-CTTTATTTGCTTACTTTC  1099
      ||||||||||||||||||||||||||||||| ||||||| || ||| |||
seq2  ATACAGAGATTATTTATATCATGTATGTGTACCTTTATTGGC-TAC-TTC  1093

seq1  CACCACAAGCATTCCTCCCTCCAAATGGCCTCATTC  1135
      |||||| |||| |||||||||| ||||| |||||||
seq2  CACCAC-AGCA-TCCTCCCTCC-AATGGGCTCATTC  1126


| Home | SequenceCutter | Blast | Download |