BAC Information

Click to search

BAC

Clone NameB6Ng01-320I21
Chromosome6 (Build37)
Map Location 15,362,802 - 15,363,917
singlet/doubletsinglet
Overlap geneFoxp2
Upstream genePpp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320I21.bB6Ng01-320I21.g
ACCGA109893GA109894
length1,1881,101
definitionB6Ng01-320I21.b B6Ng01-320I21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccgcattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatactttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttccccagtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgatcttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcattgaagaattgaggtggaatttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttccttaatttctttcttcagagatttgaagtttttatcatac
agatctttcactttccttagttagagtcatgccaagatatttatattatt
tgtgactattgagaagggtgttgttcctaattctttctcagcctgtttat
tctttgtatagagaaagccattgacttgtttgagtttattttatatcagc
tacttcaccgaggctgttttatcagtttaggagttctctggtagattttt
aaggttcacttatatatacctatcatatcatctgcaagtaatttggattc
ctctttccagtttgagatccccttgaactctcctggtg

gaattcttctcttagagcaagccagaagcttgtctttgtgcaaatagaaa
gaaatcttcatcaaaattactttgttttatattctcgaaataagaattag
gtcattttctgagtacttgatagctatatgccaatgtaccttgacagcaa
gaaatatttgcttaggttcataatttgaattatagaaagtattggagata
aattatgttgtctactgtatatttattatggttaaaattttgggaatgac
ttaattcgatttaaaaatgttaattttgagtaattactctaatacagagc
tgccaacaacatctgtttgcataatcattatgggaaggaaaaggtactct
cgggttctagccctgactttcaattgagtttaacatttacaaaaacttta
ttgggaatttaaaaaaaaaaaagtctaagtgtgtcttattgtgcaggcag
aacactgctctgtaacttgcatatgtcatctaataatacagaataaacaa
actctgtcatttcattattatagggatgaaaagaatgcctttgagcttat
ttgcataaagctttgtgcaaaattaacacttgtcagtgtagcctttttag
cattttaatacctcaagcaggactggttcctctggacatttcaaccatcc
ctgagtgcttgatcagggacacaacagagctgacctaattgttctggcat
tttcaaagatactgtaatttgtacagatattgcaatttagaccagttcaa
tgaaagaaaggttttgacacagctattattaaaatagcttggaagtctcc
cttatcaccaagttcaaactgcagattccagtcatttgtaagttgggggt
ttgtaatatcatgccatattttgattttcatgcttaagcatgttagaatt
tttccctctgatcaagtaagatcataaagcactgtgttgggctgccttat
taaacaatattcttctgctctcttggctctttaccgtctgattagatgca
gtgcgtcatatctagcctgcacaatgttttgtcgagtagaaaatgtaaag
aagcagtgtggactgtgacgagtcgaatacagagcgatgtcacaaaagat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15362802_15363917
seq2: B6Ng01-320I21.g_66_1166

seq1  GAATTCTTCTCTTAGAGCAAGCCAGAAGCTTGTCTTTGTGCAAATAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTTAGAGCAAGCCAGAAGCTTGTCTTTGTGCAAATAGAAA  50

seq1  GAAATCTTCATCAAAATTACTTTGTTTTATATTCTCGAAATAAGAATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTCATCAAAATTACTTTGTTTTATATTCTCGAAATAAGAATTAG  100

seq1  GTCATTTTCTGAGTACTTGATAGCTATATGCCAATGTACCTTGACAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTCTGAGTACTTGATAGCTATATGCCAATGTACCTTGACAGCAA  150

seq1  GAAATATTTGCTTAGGTTCATAATTTGAATTATAGAAAGTATTGGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTGCTTAGGTTCATAATTTGAATTATAGAAAGTATTGGAGATA  200

seq1  AATTATGTTGTCTACTGTATATTTATTATGGTTAAAATTTTGGGAATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTGTCTACTGTATATTTATTATGGTTAAAATTTTGGGAATGAC  250

seq1  TTAATTCGATTTAAAAATGTTAATTTTGAGTAATTACTCTAATACAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCGATTTAAAAATGTTAATTTTGAGTAATTACTCTAATACAGAGC  300

seq1  TGCCAACAACATCTGTTTGCATAATCATTATGGGAAGGAAAAGGTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAACATCTGTTTGCATAATCATTATGGGAAGGAAAAGGTACTCT  350

seq1  CGGGTTCTAGCCCTGACTTTCAATTGAGTTTAACATTTACAAAAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCTAGCCCTGACTTTCAATTGAGTTTAACATTTACAAAAACTTTA  400

seq1  TTGGGAATTTAAAAAAAAAAAAGTCTAAGTGTGTCTTATTGTGCAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTTAAAAAAAAAAAAGTCTAAGTGTGTCTTATTGTGCAGGCAG  450

seq1  AACACTGCTCTGTAACTTGCATATGTCATCTAATAATACAGAATAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCTCTGTAACTTGCATATGTCATCTAATAATACAGAATAAACAA  500

seq1  ACTCTGTCATTTCATTATTATAGGGATGAAAAGAATGCCTTTGAGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCATTTCATTATTATAGGGATGAAAAGAATGCCTTTGAGCTTAT  550

seq1  TTGCATAAAGCTTTGTGCAAAATTAACACTTGTCAGTGTAGCCTTTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAAGCTTTGTGCAAAATTAACACTTGTCAGTGTAGCCTTTTTAG  600

seq1  CATTTTAATACCTCAAGCAGGACTGGTTCCTCTGGACATTTCAACCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATACCTCAAGCAGGACTGGTTCCTCTGGACATTTCAACCATCC  650

seq1  CTGAGTGCTTGATCAGGGACACAACAGAGCTGACCTAATTGTTCTGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTTGATCAGGGACACAACAGAGCTGACCTAATTGTTCTGGCAT  700

seq1  TTTCAAAGATACTGTAATTTGTACAGATATTGCAATTTAGACCAGTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGATACTGTAATTTGTACAGATATTGCAATTTAGACCAGTTCAA  750

seq1  TGAAAGAAAGGTTTTGACACAGCTATTATTAAAATAGCTTGGAAGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAAGGTTTTGACACAGCTATTATTAAAATAGCTTGGAAGTCTCC  800

seq1  CTTATCACCAAGTTCAAACTGCAGATTCCAGTCATTTGTAAGTTGGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACCAAGTTCAAACTGCAGATTCCAGTCATTTGTAAGTTGGGGGT  850

seq1  TTGTAATATCATGCCATATTTTGATTTTCATGCTTAAGCATGTTAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATCATGCCATATTTTGATTTTCATGCTTAAGCATGTTAGAATT  900

seq1  TTTCCCTCTGATCAAGTAAGATCAATAAAGCACTGTGTTGGGCTGCCTTA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCCCTCTGATCAAGTAAGATC-ATAAAGCACTGTGTTGGGCTGCCTTA  949

seq1  TTAAACAATATTCTTCTTGCTCCTCTTGGCTCTTTACCGTCTGATTTAGA  1000
      |||||||||||||||| |||| |||||||||||||||||||||| |||| 
seq2  TTAAACAATATTCTTC-TGCT-CTCTTGGCTCTTTACCGTCTGA-TTAG-  995

seq1  ATGCAGTGCGTCATAATCTTAGCCTGCACAAATGTTTTGTTCGAGTAGAA  1050
      |||||||||||||| ||| |||||||||| ||||||||| ||||||||||
seq2  ATGCAGTGCGTCAT-ATC-TAGCCTGCAC-AATGTTTTG-TCGAGTAGAA  1041

seq1  AATGTTAAAGGAGCAGTGTGGACTGTGGACGAAGTCGAATACCAGAAGCG  1100
      |||| ||||| ||||||||||||||| |||| ||||||||| ||| ||||
seq2  AATG-TAAAGAAGCAGTGTGGACTGT-GACG-AGTCGAATA-CAG-AGCG  1086

seq1  AAGGTCACAAAAGATA  1116
       | |||||||||||||
seq2  -ATGTCACAAAAGATA  1101


| Home | SequenceCutter | Blast | Download |