BAC Information

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BAC

Clone NameB6Ng01-321C15
Chromosome4 (Build37)6 (Build37)
Map Location 111,698,677 - 111,699,263130,734,056 - 130,734,527
singlet/doubletsingletsinglet
Overlap geneLOC639781
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
Downstream gene9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321C15.bB6Ng01-321C15.g
ACCGA110345GA110346
length581684
definitionB6Ng01-321C15.b B6Ng01-321C15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,698,677 - 111,699,263)(130,734,056 - 130,734,527)
sequence
cctaactgatggccaaactacacttgggaggacatctaggatgttaattg
tgatcttccaaaagagatctctatttgaggccttttaagtggggagcacc
ttaaaacccaggacagtttttttcattaattaatttatttattcacttta
catcccaatttctgtaaccctccctcatcttctcccagtcccagtttttg
ttgttgttgttttgttttgtttttgtttttgtttttgtttgcattttatg
attttggaggaattcttctcttgagtacagcatagtagagagtgtatgca
aactttttctcctataataaattaataacctaatgtcacaattaacaccc
ctcccagtgtactcacctctccctttgctgtgatgagtaacctctgttac
cattcttactatagttgagaacattgctgtttccacagataaggttactg
gattcttgaggaagtgaagtgacaaatacatttttttgttttttgttttg
tgttttgtgtttttgttgttgttcttgttgttttggttttgcttttggtt
ttaggggtttctttttggttttttttggggg

gaattcctgatttgatttaaatacttttaggaagttagggcaactgatag
gaagtttaaggaggtcatttaagttataataaagttataattaagaatag
aatgtgccctctcctttgtagtgaaaataagttagaaatggagtaccgtg
agttttcatgtgttacaagcatgcaattgtactaggcagagaaaaatagg
cttgggacaagtgagtaatcaaagaaaacattcattctaggttgggtctg
agttactggatcttgtgatttagagatgtggccataggtttcaatgtgca
atataagacagagttataaataacgagtaaataattctcttataagagta
gaaaatagttgattaggtagtttagctgaacaagacttcaaaaataaagt
atagaggaaaagttttgctaggtatatgtttcaaaaatacacaatcaata
attcagttgtaatatcctcttgtgtaatgattttattctgttgttgaaga
atatgttttcatggtgattgtttttagagaatgtgtaacttgtggctatg
agataatcttttccttacatagaaaactttgtcttagatgttataaaaag
gccaagaggaaaaaataaagttgttgtagcttgctccctccaaatatgta
tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111698677_111699263
seq2: B6Ng01-321C15.b_45_631 (reverse)

seq1  CCCCCAAAAAAAACCAAAAAGAAACCCCTAAAACCAAAAGCAAAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAAAAAACCAAAAAGAAACCCCTAAAACCAAAAGCAAAACCAAA  50

seq1  ACAACAAGAACAACAACAAAAACACAAAACACAAAACAAAAAACAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAACAACAACAAAAACACAAAACACAAAACAAAAAACAAAAAA  100

seq1  ATGTATTTGTCACTTCACTTCCTCAAGAATCCAGTAACCTTATCTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGTCACTTCACTTCCTCAAGAATCCAGTAACCTTATCTGTGGA  150

seq1  AACAGCAATGTTCTCAACTATAGTAAGAATGGTAACAGAGGTTACTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATGTTCTCAACTATAGTAAGAATGGTAACAGAGGTTACTCATC  200

seq1  ACAGCAAAGGGAGAGGTGAGTACACTGGGAGGGGTGTTAATTGTGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAGGGAGAGGTGAGTACACTGGGAGGGGTGTTAATTGTGACATT  250

seq1  AGGTTATTAATTTATTATAGGAGAAAAAGTTTGCATACACTCTCTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTAATTTATTATAGGAGAAAAAGTTTGCATACACTCTCTACTAT  300

seq1  GCTGTACTCAAGAGAAGAATTCCTCCAAAATCATAAAATGCAAACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACTCAAGAGAAGAATTCCTCCAAAATCATAAAATGCAAACAAAAA  350

seq1  CAAAAACAAAAACAAAACAAAACAACAACAACAAAAACTGGGACTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAACAAAACAAAACAACAACAACAAAAACTGGGACTGGGAG  400

seq1  AAGATGAGGGAGGGTTACAGAAATTGGGATGTAAAGTGAATAAATAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGAGGGTTACAGAAATTGGGATGTAAAGTGAATAAATAAATT  450

seq1  AATTAATGAAAAAAACTGTCCTGGGTTTTAAGGTGCTCCCCACTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAAAAAAACTGTCCTGGGTTTTAAGGTGCTCCCCACTTAAAAG  500

seq1  GCCTCAAATAGAGATCTCTTTTGGAAGATCACAATTAACATCCTAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATAGAGATCTCTTTTGGAAGATCACAATTAACATCCTAGATGT  550

seq1  CCTCCCAAGTGTAGTTTGGCCATCAGTTAGGGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGTAGTTTGGCCATCAGTTAGGGAATTC  587


seq1: chr6_130734056_130734527
seq2: B6Ng01-321C15.g_491_751 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACAAT------  44
        |||||||||||||||||||||||||||||| ||| ||| | |      
seq2  --CACACACACACACACACACACACACACACATACATACATATTTGGAGG  48

seq1  --GTAA--TGCAAATGCCCTAAATGTCCCTGTACAGTTTGCTTGAAATAC  90
        | ||  | |||   |  ||  | | ||| |     ||  |  ||   |
seq2  GAGCAAGCTACAACAACTTTATTTTTTCCTCTTGGCCTTTTTATAACATC  98

seq1  TAA-ATATAATTTCATTTGCAATAAGTAAAATATGGCCTTTCCCTTTTCA  139
      ||| | | | |||  | ||   |||| |||| ||    | || | |  | 
seq2  TAAGACAAAGTTTTCTATG---TAAGGAAAAGAT----TATCTCATAGC-  140

seq1  TCATAAATTTGTGACATCCTGTGATTTGAAAAAAATAAGAGTGAGAATTC  189
       || || ||    |||| |     | | |||| ||| |   ||| ||   
seq2  -CACAAGTT--ACACATTC-----TCTAAAAACAATCACCATGA-AAACA  181

seq1  TATTGTGGACAATATGAACAATGTACTATAAACATCAACATTTTGACCAG  239
      |||| |        | |||||   | || || ||| |          || 
seq2  TATTCT--------TCAACAACAGAATAAAATCATTA----------CAC  213

seq1  AAGAGGATTTGTAATCTTAAAGCTTCAACATCTTCCCCACCCATTGGATC  289
      |||||||| |   | || ||            ||        ||||    
seq2  AAGAGGATATTACAACTGAA------------TT--------ATTG----  239

seq1  CACTTAGAATTTTACCCTGGAACAGAAGCTATGTTCCTTGTAATACAAGT  339
       | |  | |||||    || ||||     |||                  
seq2  -ATTGTGTATTTT----TGAAACA-----TAT------------------  261

seq1  TATTTTATGCATAAAACACACACACATACATACCCAGGAAACCTCATGGT  389
                                                        
seq2  --------------------------------------------------  261

seq1  TTTCTCTGCTCAACACATACACTCTTCAAAATTGTTGTCTTAGAATTTGT  439
                                                        
seq2  --------------------------------------------------  261

seq1  CAAAAGCAATCCAATTTATTTTTTGAAACATAT  472
                                       
seq2  ---------------------------------  261


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