BAC Information

Click to search

BAC

Clone NameB6Ng01-321O02
Chromosome6 (Build37)
Map Location 109,965,185 - 109,966,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321O02.bB6Ng01-321O02.g
ACCGA110873GA110874
length1,1121,182
definitionB6Ng01-321O02.b B6Ng01-321O02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggaatcacaattcctatctctattcccaaggagcctaactga
taaaaataaaacaaaaaaattgctcagtttggtaagatgtaaataataat
ttaatttgctgttcactataaggacttactagtgaggaatctagtatgca
cacacacacacaagtggtccatcaaaaatgttagagattcagtatggtgc
tcataatgtgttcaagccactggaatctactgaaatgtaacaacaattta
acatgatgggaagtgtaagctagtgccttttcttcaccctacttatctcc
ccagagcttttctctaagtaaaatatgtgcttggaaagcagtgtatattt
agtaagttaaggctttcaaatgtgggtcaaatgtgtcatcaggtttctga
aatattgctataagccagcaaaaggcagttctggctttcagatgcgggga
atgtactgaggcatatatttcagagtttgtgctactgaaaggacatccca
gggtaacaaatagatctatttatcctgagttctgcatggcccaagcagca
aggtgtaatttgttgaatgatagaacttatttctatgaactaacaaaagc
tagggaggaatcactaaagagttggagatggctgaatttccatttcagat
ctcaaactacatagtacaaaggcttaaagagaaaggtaaaaagaagaata
actgaccagtaccttgtgaatgtacttaatattaaaagaaatattattta
ccactagctaggggcctgcccgactctgtgagtacaaaggtaagaaggga
gagtcagtaattggcagggcttatttggacaatcttgattaatagacttt
tggacaccttggcttgcagatagagataactaggcatgccatctttctat
gtattgggtggagataaggagttgctgatagagtcaggtgatatctgcca
tgaataaaaaatataaatatacttacaattggaatggactatagtggaac
tggtggaatagcatgatcccttttctggatgaaatacattggcctagttt
atcacatgtcatcttttttatagctagcacatacttcgtagtcaataacc
actacaatatgc

gaattctcacctgaggaataccgaatggcagagaagaacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tccacttcacaccagtcagaatggctaagatcaaaaattcaagtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcg
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattataaagaatgaatttatgaaattcctagccaa
atggatggaccgggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtaatccctgataagtggatattagccccaaacc
taggatacccaaggtataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagtgatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctctggtcagactatgtcggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatgggatcacagggcccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcacccta
tagtgaacacattatgactaccagtaccccggagctctgactctagctgc
atatgtttcaaagatggctatgcatcactgaaagaagatgcccattggaa
cagtaactttatatgcccagtacagaacgcagccaaaagggaatgggggt
ttaagtgagcattggggcgttatccactcgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109965185_109966306
seq2: B6Ng01-321O02.b_46_1157 (reverse)

seq1  GCATATTGTAGTGGTTTAATGACCTAACCAAATTATGGTGCTAGCTATAA  50
      |||||||||||||| ||| ||| |||  | || ||| |||||||||||||
seq2  GCATATTGTAGTGG-TTATTGA-CTA--CGAAGTAT-GTGCTAGCTATAA  45

seq1  AAAAGATGACATGGTGATAAACCTAGGCCAAATGTATTTCATCCCAGAAA  100
      |||||||||||| |||||||| ||||||| ||||||||||||||   |||
seq2  AAAAGATGACAT-GTGATAAA-CTAGGCC-AATGTATTTCATCCAGAAAA  92

seq1  GGGATCATGCTATTCCACCAGTTTCCACTATAGTCCATTCCAATTGTAAG  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGATCATGCTATTCCACCAG-TTCCACTATAGTCCATTCCAATTGTAAG  141

seq1  TATATTTTATATTTTTTATTCATGGCAGATATCACCTGACTCTATCAGCA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATA-TTTATATTTTTTATTCATGGCAGATATCACCTGACTCTATCAGCA  190

seq1  ACTCCTTATCTCCACCCAATACATAGAAAGATGGCATGCCTAGTTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTATCTCCACCCAATACATAGAAAGATGGCATGCCTAGTTATCTC  240

seq1  TATCTGCAAGCCAAGGTGTCCAAAAGTCTATTAATCAAGATTGTCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAAGCCAAGGTGTCCAAAAGTCTATTAATCAAGATTGTCCAAAT  290

seq1  AAGCCCTGCCAATTACTGACTCTCCCTTCTTACCTTTGTACTCACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGCCAATTACTGACTCTCCCTTCTTACCTTTGTACTCACAGAGT  340

seq1  CGGGCAGGCCCCTAGCTAGTGGTAAATAATATTTCTTTTAATATTAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGCCCCTAGCTAGTGGTAAATAATATTTCTTTTAATATTAAGTA  390

seq1  CATTCACAAGGTACTGGTCAGTTATTCTTCTTTTTACCTTTCTCTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAGGTACTGGTCAGTTATTCTTCTTTTTACCTTTCTCTTTAAG  440

seq1  CCTTTGTACTATGTAGTTTGAGATCTGAAATGGAAATTCAGCCATCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACTATGTAGTTTGAGATCTGAAATGGAAATTCAGCCATCTCCA  490

seq1  ACTCTTTAGTGATTCCTCCCTAGCTTTTGTTAGTTCATAGAAATAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAGTGATTCCTCCCTAGCTTTTGTTAGTTCATAGAAATAAGTTC  540

seq1  TATCATTCAACAAATTACACCTTGCTGCTTGGGCCATGCAGAACTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCAACAAATTACACCTTGCTGCTTGGGCCATGCAGAACTCAGGA  590

seq1  TAAATAGATCTATTTGTTACCCTGGGATGTCCTTTCAGTAGCACAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGATCTATTTGTTACCCTGGGATGTCCTTTCAGTAGCACAAACTC  640

seq1  TGAAATATATGCCTCAGTACATTCCCCGCATCTGAAAGCCAGAACTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATATGCCTCAGTACATTCCCCGCATCTGAAAGCCAGAACTGCCT  690

seq1  TTTGCTGGCTTATAGCAATATTTCAGAAACCTGATGACACATTTGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGCTTATAGCAATATTTCAGAAACCTGATGACACATTTGACCCA  740

seq1  CATTTGAAAGCCTTAACTTACTAAATATACACTGCTTTCCAAGCACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAGCCTTAACTTACTAAATATACACTGCTTTCCAAGCACATAT  790

seq1  TTTACTTAGAGAAAAGCTCTGGGGAGATAAGTAGGGTGAAGAAAAGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGAGAAAAGCTCTGGGGAGATAAGTAGGGTGAAGAAAAGGCAC  840

seq1  TAGCTTACACTTCCCATCATGTTAAATTGTTGTTACATTTCAGTAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACACTTCCCATCATGTTAAATTGTTGTTACATTTCAGTAGATTC  890

seq1  CAGTGGCTTGAACACATTATGAGCACCATACTGAATCTCTAACATTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTGAACACATTATGAGCACCATACTGAATCTCTAACATTTTTG  940

seq1  ATGGACCACTTGTGTGTGTGTGTGCATACTAGATTCCTCACTAGTAAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCACTTGTGTGTGTGTGTGCATACTAGATTCCTCACTAGTAAGTC  990

seq1  CTTATAGTGAACAGCAAATTAAATTATTATTTACATCTTACCAAACTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTGAACAGCAAATTAAATTATTATTTACATCTTACCAAACTGAG  1040

seq1  CAATTTTTTTGTTTTATTTTTATCAGTTAGGCTCCTTGGGAATAGAGATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTGTTTTATTTTTATCAGTTAGGCTCCTTGGGAATAGAGATA  1090

seq1  GGAATTGTGATTCCCTGAATTC  1122
      ||||||||||||||||||||||
seq2  GGAATTGTGATTCCCTGAATTC  1112


| Home | SequenceCutter | Blast | Download |