BAC Information

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BAC

Clone NameB6Ng01-322H18
Chromosome6 (Build37)
Map Location 3,442,685 - 3,443,820
singlet/doubletsinglet
Overlap geneAI987662
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l
Downstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H18.bB6Ng01-322H18.g
ACCGA111314GA111315
length1,1361,187
definitionB6Ng01-322H18.b B6Ng01-322H18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcaagcagtttgattgtattgactataaacattaggttttaca
aagtgacctctatggcagctcagaatagttggtctttatttcctcattag
cacacacattattagcaaacataacatgactattgttgactgaaaataaa
ctcttgcatcattagaaaaaatagaattttccagtctgtattttgaatag
actatttaatcaaacacggaagcttattttaaaatttttttaaaggtaca
aagaaaattcagtattttaaaagcaaaaggactttcatattacttgtgac
ctttgtgacttgtcacttccagagaaagtgaatttcagtaaggagggagg
tctttctctataataacaactttattttgaagttgggaaaaaatcaccat
tacattttaattaattttattttagtcaaatttctcaactgaattcattc
ctgaattcttcttaaggccaattacaaaaacattatctgtgaaaacctat
cagtccctctatttaaaaatgagacacacacacacacacacacacacaca
catacacacaaacagagagagagagagagagagagagagagagaaagaat
cccaggatcacataatagctaagaatgatgttaaattatggtaacataca
atatattacaggtttaaatttgatagtatgacaatatagtccctgagatg
accacagttaaggggaacagacagattaaaaatttacaggtagcattttt
atgtcagtgagatttatatgcatcacatacaaatgtagataataattaga
atgaaaagtaacaaaatacattagagaaaataaaactttaaatacctcct
aaaatccaaagctcaaattgtttttatatatctgttattctttatatatc
tgttattctttaatgaataaaactccttttagacttctatcagataaatg
taaacaaaaaaagaaactaacttgacgcttaagatctacaataggaggga
tggaaactcttgatgaaaaaaatactgatggataacagtgcgtcatgata
tagggaggcaaactcttatgttcaagagagagagattaaattattagatc
ttagtaaaaaaagaaaatagactagttcactgacaa
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaagcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcagatgacagc
agatgctggcgtggatgtggagaaagaggaatactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacaactacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttatatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgataccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactattccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggacgagctagagaaagtagcctaaggagctaagggatctgctaccct
atagtggatcatcattatgaactgatcagtacccagagctcatgactcta
gctgcatattatatcgaaggcatgactagtcgcattcactgtaagtagaa
ggccaatgactgtctaacttaatgccagtcaggcaacaccaggtcaaaac
cggggaactggctgtgccatcgaggaagtatgctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3442685_3443820
seq2: B6Ng01-322H18.b_44_1179

seq1  GAATTCTGCAAGCAGTTTGATTGTATTGACTATAAACATTAGGTTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAGCAGTTTGATTGTATTGACTATAAACATTAGGTTTTACA  50

seq1  AAGTGACCTCTATGGCAGCTCAGAATAGTTGGTCTTTATTTCCTCATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCTCTATGGCAGCTCAGAATAGTTGGTCTTTATTTCCTCATTAG  100

seq1  CACACACATTATTAGCAAACATAACATGACTATTGTTGACTGAAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATTATTAGCAAACATAACATGACTATTGTTGACTGAAAATAAA  150

seq1  CTCTTGCATCATTAGAAAAAATAGAATTTTCCAGTCTGTATTTTGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATCATTAGAAAAAATAGAATTTTCCAGTCTGTATTTTGAATAG  200

seq1  ACTATTTAATCAAACACGGAAGCTTATTTTAAAATTTTTTTAAAGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAATCAAACACGGAAGCTTATTTTAAAATTTTTTTAAAGGTACA  250

seq1  AAGAAAATTCAGTATTTTAAAAGCAAAAGGACTTTCATATTACTTGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTCAGTATTTTAAAAGCAAAAGGACTTTCATATTACTTGTGAC  300

seq1  CTTTGTGACTTGTCACTTCCAGAGAAAGTGAATTTCAGTAAGGAGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGACTTGTCACTTCCAGAGAAAGTGAATTTCAGTAAGGAGGGAGG  350

seq1  TCTTTCTCTATAATAACAACTTTATTTTGAAGTTGGGAAAAAATCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTATAATAACAACTTTATTTTGAAGTTGGGAAAAAATCACCAT  400

seq1  TACATTTTAATTAATTTTATTTTAGTCAAATTTCTCAACTGAATTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAATTAATTTTATTTTAGTCAAATTTCTCAACTGAATTCATTC  450

seq1  CTGAATTCTTCTTAAGGCCAATTACAAAAACATTATCTGTGAAAACCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCTTCTTAAGGCCAATTACAAAAACATTATCTGTGAAAACCTAT  500

seq1  CAGTCCCTCTATTTAAAAATGAGACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTCTATTTAAAAATGAGACACACACACACACACACACACACACA  550

seq1  CATACACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAT  600

seq1  CCCAGGATCACATAATAGCTAAGAATGATGTTAAATTATGGTAACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCACATAATAGCTAAGAATGATGTTAAATTATGGTAACATACA  650

seq1  ATATATTACAGGTTTAAATTTGATAGTATGACAATATAGTCCCTGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTACAGGTTTAAATTTGATAGTATGACAATATAGTCCCTGAGATG  700

seq1  ACCACAGTTAAGGGGAACAGACAGATTAAAAATTTACAGGTAGCATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTTAAGGGGAACAGACAGATTAAAAATTTACAGGTAGCATTTTT  750

seq1  ATGTCAGTGAGATTTATATGCATCACATACAAATGTAGATAATAATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTGAGATTTATATGCATCACATACAAATGTAGATAATAATTAGA  800

seq1  ATGAAAAGTAACAAAATACATTAGAGAAAATAAAACTTTAAATACCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTAACAAAATACATTAGAGAAAATAAAACTTTAAATACCTCCT  850

seq1  AAAATCCAAAGCTCAAATTGTTTTTATATATCTGTTATTCTTTATATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAAGCTCAAATTGTTTTTATATATCTGTTATTCTTTATATATC  900

seq1  TGTTATTCTTTAATGAATAAAACTCCTTTTAGACTTCTATCAGATAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTTTAATGAATAAAACTCCTTTTAGACTTCTATCAGATAAATG  950

seq1  TAAACAAAAAAAGAAACTAACTTGACGCTTAAGATCTACAATAGGAGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAAAAGAAACTAACTTGACGCTTAAGATCTACAATAGGAGGGA  1000

seq1  TGGAAACTCTTGATGAAAAAAATACTGATGGATAACAGTGCGTCATGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTCTTGATGAAAAAAATACTGATGGATAACAGTGCGTCATGATA  1050

seq1  TAGGGAGGCAAACTC-TATGTCAAAAGAGAGAGAGATAAAAATATTAAGA  1099
      ||||||||||||||| |||||   ||||||||||||| ||| |||| |||
seq2  TAGGGAGGCAAACTCTTATGT-TCAAGAGAGAGAGATTAAATTATT-AGA  1098

seq1  TC-TAGTAAAAAAAGAAAATAGGACTAG-TCACTGACAA  1136
      || |||||||||||||||||| |||||| ||||||||||
seq2  TCTTAGTAAAAAAAGAAAATA-GACTAGTTCACTGACAA  1136