BAC Information

Click to search

BAC

Clone NameB6Ng01-322O16
Chromosome6 (Build37)
Map Location 8,936,287 - 9,082,640
singlet/doubletdoublet
Overlap geneNxph1
Upstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322O16.bB6Ng01-322O16.g
ACCGA111633GA111634
length1,1461,152
definitionB6Ng01-322O16.b B6Ng01-322O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,936,287 - 8,937,435)(9,081,487 - 9,082,640)
sequence
gaattctgcactgtcctaggagcaagtgggctgccaaccccccagtgatg
acagaccttccttttaacttcttggaaacaataaggcaaatctatatgaa
tcaatccccaaagaacacaggtatgtggagcccacattaaattactaagg
agtttgatgaattcctggaccatcaatgagtggacagctcatgagtcaat
ctttatagggccctctgtgactacacagaatccaaaagccgggtatctaa
tgatggatagccaattagcagtgacaccaaacttttaaaaatttcactgt
tgctttgtcaaagtctgaagctccgcttcatttattttcatccttgtgac
tgggattgtgagaggatttgggtggaaatgaaaaatcaagtacgaagaga
tagttttttagttgttgcacgtgttactgtttttaaacgttggaactgat
gtgagcagttctcatggcaagttttcatctggtggatgaagtactaaagg
acacagaaaagcaaagctttctggatacacacatacacacacacatgcac
atgtgcacacacacacacacacacacacacacacacacacacacacccca
catcacaattgggatatataaaaaaaagtaaaagaagaaaatctcccata
cttttttggaaaataaactcatacgagcatagtgaacgttgtattgtctt
agctttgtcttacagttatctctcttcttccagtacataaaagtatacaa
acgcctgtaggtttaaactcaactacaaaagatagtatgcatactgcaaa
ctgttttgtgatgagcttttcggtttgtccattatactgtgaagacatcc
cagattccccagatcattataagaattagaaaatgtaatttgcatagttg
tatagtggctcacagggttctacttaatctacttaaactagctgttttag
ttatttttctgttaacagtgacaaagctcttctgaacagcaacatattaa
aacatggaattaatttagaggccttttaacaagttcagttgggggagggc
catggtcgtcatggcttgagtaagcaacatgccagtcagattgaagtgta
gcagtaggtggagagtttacatatgatcccaagtgagagaataaaa

gaattccctggtcccatgaagttttgaagaagttgagtggtaatgaacaa
ggaggtgagcatataagcaactaaatttataaaatgtagagttgtgataa
tttcacagtaagaataatagggtgctgataaagacagagttgaggtttta
tgcaaggtcaccagggaagagaatactgataagccaagaggctatctgga
gaagactgttttgagtggagaacagcaggaacaaaagctctaacatgagt
ttatctgtatgttccataagcacaagaggacaatggtaagaaaatagtac
agaaaacgaggtcagaaatgtagttgtgggcaaccatataaagctacata
agatgaagcagggactagaagatttaccttgaggtaagaatttattgcag
gggatataagcagaaatctagagtaatatgactttcattttaatgaatct
cactgaatataatttggagaacagactctatgaccacttggtgaaagttg
ataactaattaggaccactgttttctctatttaccccttataatttttta
aaatgtgtttcatttccattagaaactcagatattgaagcttatattatc
cattgaacatatggtgttcctgatattttaaattcatttgtataattatt
tgataaatacttttctcctttgttggcccattaacctcttcaagaagagc
tgtgatagaggcattaatagagttttcatactctaatgccaagtgagcac
aaaacaccactggtcatcagtaaatactacagaatgaaaacaaaacaaaa
caaaacaaaacaaaaaaatcaggaatgatggagaaaggatataagagcaa
gagggaaaatattggcacattattatttatagatgtatatttgtttatta
gtattcaaaaactccaacactcttgagcaagtagattcagatttttcaaa
gctttattggaaagattatggcctccctttccatggaagtttgggtcaca
aagacatagcagaagaaagcttactgtgcctcatacactaaagccttcat
tgatcttaatacaaaaacctcgagtgatttgttatcattgcattggactt
agcttagtacccagcataaacatggaactaaggttccaactcacgcttag
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8936287_8937435
seq2: B6Ng01-322O16.b_50_1195

seq1  GAATTCTGCACTGTCCTAGGAGCAAGTGGGCTGCCAACCCCCCAGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGTCCTAGGAGCAAGTGGGCTGCCAACCCCCCAGTGATG  50

seq1  ACAGACCTTCCTTTTAACTTCTTGGAAACAATAAGGCAAATCTATATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTTCCTTTTAACTTCTTGGAAACAATAAGGCAAATCTATATGAA  100

seq1  TCAATCCCCAAAGAACACAGGTATGTGGAGCCCACATTAAATTACTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCCCAAAGAACACAGGTATGTGGAGCCCACATTAAATTACTAAGG  150

seq1  AGTTTGATGAATTCCTGGACCATCAATGAGTGGACAGCTCATGAGTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGAATTCCTGGACCATCAATGAGTGGACAGCTCATGAGTCAAT  200

seq1  CTTTATAGGGCCCTCTGTGACTACACAGAATCCAAAAGCCGGGTATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGGGCCCTCTGTGACTACACAGAATCCAAAAGCCGGGTATCTAA  250

seq1  TGATGGATAGCCAATTAGCAGTGACACCAAACTTTTAAAAATTTCACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATAGCCAATTAGCAGTGACACCAAACTTTTAAAAATTTCACTGT  300

seq1  TGCTTTGTCAAAGTCTGAAGCTCCGCTTCATTTATTTTCATCCTTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCAAAGTCTGAAGCTCCGCTTCATTTATTTTCATCCTTGTGAC  350

seq1  TGGGATTGTGAGAGGATTTGGGTGGAAATGAAAAATCAAGTACGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGTGAGAGGATTTGGGTGGAAATGAAAAATCAAGTACGAAGAGA  400

seq1  TAGTTTTTTAGTTGTTGCACGTGTTACTGTTTTTAAACGTTGGAACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTAGTTGTTGCACGTGTTACTGTTTTTAAACGTTGGAACTGAT  450

seq1  GTGAGCAGTTCTCATGGCAAGTTTTCATCTGGTGGATGAAGTACTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGTTCTCATGGCAAGTTTTCATCTGGTGGATGAAGTACTAAAGG  500

seq1  ACACAGAAAAGCAAAGCTTTCTGGATACACACATACACACACACATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAGCAAAGCTTTCTGGATACACACATACACACACACATGCAC  550

seq1  ATGTGCACACACACACACACACACACACACACACACACACACACACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACACACACACACACACACACACACACACACACACACACACCCCA  600

seq1  CATCACAATTGGGATATATAAAAAAAAGTAAAAGAAGAAAATCTCCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAATTGGGATATATAAAAAAAAGTAAAAGAAGAAAATCTCCCATA  650

seq1  CTTTTTTGGAAAATAAACTCATACGAGCATAGTGAACGTTGTATTGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGAAAATAAACTCATACGAGCATAGTGAACGTTGTATTGTCTT  700

seq1  AGCTTTGTCTTACAGTTATCTCTCTTCTTCCAGTACATAAAAGTATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCTTACAGTTATCTCTCTTCTTCCAGTACATAAAAGTATACAA  750

seq1  ACGCCTGTAGGTTTAAACTCAACTACAAAAGATAGTATGCATACTGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGTAGGTTTAAACTCAACTACAAAAGATAGTATGCATACTGCAAA  800

seq1  CTGTTTTGTGATGAGCTTTTCGGTTTGTCCATTATACTGTGAAGACATCC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTTTTGTGATGAGCTTTTCGGTTTGTCCATTATACTGTGAAGACAT-C  849

seq1  CCAGATTCCCCAGATCATTATAAGAATTAGAAAATGTAATTTGCATAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCCCAGATCATTATAAGAATTAGAAAATGTAATTTGCATAGTT  899

seq1  GTATAGTGGCTCACAGGGTTCTACTTAATCTACTTAAACTAGCTGTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGGCTCACAGGGTTCTACTTAATCTACTTAAACTAGCTGTTTTA  949

seq1  GTTATTTTTCTGTT-ACAGTGACAAAGCTC-TCTGAACAAGGCAACATAT  998
      |||||||||||||| ||||||||||||||| ||||||||  |||||||||
seq2  GTTATTTTTCTGTTAACAGTGACAAAGCTCTTCTGAACA--GCAACATAT  997

seq1  TAAAACATGGATTTAATTTAGAGGCCTTTTAACAGTTTCAGTTGGGGGAG  1048
      ||||||||||| ||||||||||||||||||||||  ||||||||||||||
seq2  TAAAACATGGAATTAATTTAGAGGCCTTTTAACAAGTTCAGTTGGGGGAG  1047

seq1  GGCCATGGTCGTCATGGCTTGGAGTAAGGCAACATG-CAGTCAGATTTGG  1097
      |||||||||||||||||||| |||||| |||||||| ||||||||||  |
seq2  GGCCATGGTCGTCATGGCTT-GAGTAA-GCAACATGCCAGTCAGATT--G  1093

seq1  AAGTGTAGCAGTAGGT-GAGAGTTTACATATGATCCACAAGTGAGAG-AT  1145
      |||||||||||||||| ||||||||||||||||||| |||||||||| ||
seq2  AAGTGTAGCAGTAGGTGGAGAGTTTACATATGATCC-CAAGTGAGAGAAT  1142

seq1  AAAA  1149
      ||||
seq2  AAAA  1146


seq1: chr6_9081487_9082640
seq2: B6Ng01-322O16.g_67_1218 (reverse)

seq1  CACTAAGCGTGAGTTGGACCTCTTGGTTCCATTGTTTATTGGCTGTGTAC  50
      |||||||||||||||||| | ||| |||||| |||||||  |||| ||||
seq2  CACTAAGCGTGAGTTGGAAC-CTTAGTTCCA-TGTTTAT--GCTGGGTAC  46

seq1  CTAGCCTAGTCCAAATGCAATGAT-ACAAATCACTCGAGG-TTTTGTA-T  97
        |||  ||||| ||||||||||| ||||||||||||||| ||||||| |
seq2  TAAGCTAAGTCC-AATGCAATGATAACAAATCACTCGAGGTTTTTGTATT  95

seq1  AGGATTCAATGAGGCTTTTAGTGTATGGGGCACAGTAAGCTTTCTTCCTG  147
      | || ||||||| |  ||||||||||| |||||||||||||||||| |||
seq2  AAGA-TCAATGAAGGCTTTAGTGTATGAGGCACAGTAAGCTTTCTT-CTG  143

seq1  CTATGTCTTTGTGA-CCAAACTTCCATGG-AAGGGAGGCCATAATCTTTC  195
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  CTATGTCTTTGTGACCCAAACTTCCATGGAAAGGGAGGCCATAATCTTTC  193

seq1  CAAT-AAGCTTTGAAAAATCCTGATTCTACTTGCTCAAGAGTGTTGGAGT  244
      |||| |||||||||||||| |||| |||||||||||||||||||||||| 
seq2  CAATAAAGCTTTGAAAAAT-CTGAATCTACTTGCTCAAGAGTGTTGGAG-  241

seq1  TTTTTGAATACTAAT-AACAAATATACATCTATAAATAATAATGTGCCAA  293
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATACTAATAAACAAATATACATCTATAAATAATAATGTGCCAA  291

seq1  TATTTTCCCTCTTGCTCTTATATCCTTTCTCCATCATTCCTGATTTTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCTCTTGCTCTTATATCCTTTCTCCATCATTCCTGATTTTTTT  341

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTCATTCTGTAGTATTTACTGATGACC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTCATTCTGTAGTATTTACTGATGACC  391

seq1  AGTGGTGTTTTGTGCTCACTTGGCATTAGAGTATGAAAACTCTATTAATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTTTTGTGCTCACTTGGCATTAGAGTATGAAAACTCTATTAATG  441

seq1  CCTCTATCACAGCTCTTCTTGAAGAGGTTAATGGGCCAACAAAGGAGAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCACAGCTCTTCTTGAAGAGGTTAATGGGCCAACAAAGGAGAAA  491

seq1  AGTATTTATCAAATAATTATACAAATGAATTTAAAATATCAGGAACACCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTATCAAATAATTATACAAATGAATTTAAAATATCAGGAACACCA  541

seq1  TATGTTCAATGGATAATATAAGCTTCAATATCTGAGTTTCTAATGGAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAATGGATAATATAAGCTTCAATATCTGAGTTTCTAATGGAAAT  591

seq1  GAAACACATTTTAAAAAATTATAAGGGGTAAATAGAGAAAACAGTGGTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATTTTAAAAAATTATAAGGGGTAAATAGAGAAAACAGTGGTCC  641

seq1  TAATTAGTTATCAACTTTCACCAAGTGGTCATAGAGTCTGTTCTCCAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTATCAACTTTCACCAAGTGGTCATAGAGTCTGTTCTCCAAAT  691

seq1  TATATTCAGTGAGATTCATTAAAATGAAAGTCATATTACTCTAGATTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAGTGAGATTCATTAAAATGAAAGTCATATTACTCTAGATTTCT  741

seq1  GCTTATATCCCCTGCAATAAATTCTTACCTCAAGGTAAATCTTCTAGTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATCCCCTGCAATAAATTCTTACCTCAAGGTAAATCTTCTAGTCC  791

seq1  CTGCTTCATCTTATGTAGCTTTATATGGTTGCCCACAACTACATTTCTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCATCTTATGTAGCTTTATATGGTTGCCCACAACTACATTTCTGA  841

seq1  CCTCGTTTTCTGTACTATTTTCTTACCATTGTCCTCTTGTGCTTATGGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTTTCTGTACTATTTTCTTACCATTGTCCTCTTGTGCTTATGGAA  891

seq1  CATACAGATAAACTCATGTTAGAGCTTTTGTTCCTGCTGTTCTCCACTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATAAACTCATGTTAGAGCTTTTGTTCCTGCTGTTCTCCACTCA  941

seq1  AAACAGTCTTCTCCAGATAGCCTCTTGGCTTATCAGTATTCTCTTCCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTTCTCCAGATAGCCTCTTGGCTTATCAGTATTCTCTTCCCTG  991

seq1  GTGACCTTGCATAAAACCTCAACTCTGTCTTTATCAGCACCCTATTATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGCATAAAACCTCAACTCTGTCTTTATCAGCACCCTATTATTC  1041

seq1  TTACTGTGAAATTATCACAACTCTACATTTTATAAATTTAGTTGCTTATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGAAATTATCACAACTCTACATTTTATAAATTTAGTTGCTTATA  1091

seq1  TGCTCACCTCCTTGTTCATTACCACTCAACTTCTTCAAAACTTCATGGGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCTCCTTGTTCATTACCACTCAACTTCTTCAAAACTTCATGGGA  1141

seq1  CCAGGGAATTC  1154
      |||||||||||
seq2  CCAGGGAATTC  1152


| Home | SequenceCutter | Blast | Download |