BAC Information

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BAC

Clone NameB6Ng01-323B22
Chromosome6 (Build37)
Map Location 21,478,402 - 21,640,001
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323B22.bB6Ng01-323B22.g
ACCGA111782GA111783
length1,155494
definitionB6Ng01-323B22.b B6Ng01-323B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,478,402 - 21,479,547)(21,639,506 - 21,640,001)
sequence
gaattccatcatttcaagtcatttcaaaagtggtttcagtttaaagacag
tgagacttaggaaaatgtaaatactgcaccctcatcttagaaatgactcc
agattcagagtgcctacactttcctgctctgttccaagcccctcagagca
acagattccttctggatcaagctagggacgtctttcttctacaaaacttt
cagtgagaggaaaatcctgagatgcagcttaataccacatgtttgataaa
tcttgtagtaggaaatgaaggaatcgtggctctgatgtctttctctccaa
agtcttcactatggctaatcagttgtttaaagcttaatgcagagaacttg
catctcttggggaagaataatgatgtcactagtggccaatctaccttgta
tatttcccatgaagatttggaaggcctggatcaaagaagtaaataaacag
aggaagagcatcacagaaggaaaagatgtcttcagaagaactaccaaaga
aatatccaactcatgacctgtggtaatactgtactccaatggacatttct
gttatgtagttaaagttagatatataatccttttactcgacttcaggttt
aaaaaatgcttcctgtcataaaagatgaacactaaccagatttatatctg
agtaaatatgaccccacatccattaaaatgtgaccaagaagaggagcaga
gttcaatgtttttgaagcagaagatgaaactatacatcagtctatggtat
gaagattcagaagtccaattcaaaccatgtgatcatttaacatgtctgga
catgagcaagcatgccaattgaaaggggacatccacgctgggatcaggtt
taataagacatcattttctactctatccatcagtcagaatcacatacacg
agctaaccatttccgtttgtgaacatgggtgtagtgtatagatttgagca
gaggaagaatgtctgaggcagaagagaggtggagaaagagctgaatgttc
tccaagaataaatagtgcattcctgcccaagcctttcagcatctgaactt
ccaggggtgtgtgtgttgattaacaaggcttagggtttcatctgtaatac
ctaactgacatgtgcctgccaatatagcctggagcacagtaagggggatt
atgga

gaattctctgtccttgaatagttctttcgcatatatacatatcagtttct
aatgaatttccccaggaggtctgtaattcattgtcatttggctcagctat
gttcatgcccacccttgggcacaatagcatttcaattaaagaaggctggt
gaaagtgtttttgctatgtatcgttatatttgttactgctttttaggact
gccacaaaaggggaatctctctctctctcaatctctctctctctctctct
ctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt
gtgaaattttaacctttgagagcctctgtgattaaaaacaaacccctggc
tcatcctccttcattgagatacagggtttattgggttgcgtaaaaatcta
ttgctgacgtacacagtggaaacagaaatctactgacatatgcacatgat
ctgtagaaagctcctgaatggggtgaagctggctgtcgttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21478402_21479547
seq2: B6Ng01-323B22.b_48_1202

seq1  GAATTCCATCATTTCAAGTCATTTCAAAAGTGGTTTCAGTTTAAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTTCAAGTCATTTCAAAAGTGGTTTCAGTTTAAAGACAG  50

seq1  TGAGACTTAGGAAAATGTAAATACTGCACCCTCATCTTAGAAATGACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTAGGAAAATGTAAATACTGCACCCTCATCTTAGAAATGACTCC  100

seq1  AGATTCAGAGTGCCTACACTTTCCTGCTCTGTTCCAAGCCCCTCAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGAGTGCCTACACTTTCCTGCTCTGTTCCAAGCCCCTCAGAGCA  150

seq1  ACAGATTCCTTCTGGATCAAGCTAGGGACGTCTTTCTTCTACAAAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCCTTCTGGATCAAGCTAGGGACGTCTTTCTTCTACAAAACTTT  200

seq1  CAGTGAGAGGAAAATCCTGAGATGCAGCTTAATACCACATGTTTGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGGAAAATCCTGAGATGCAGCTTAATACCACATGTTTGATAAA  250

seq1  TCTTGTAGTAGGAAATGAAGGAATCGTGGCTCTGATGTCTTTCTCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGTAGGAAATGAAGGAATCGTGGCTCTGATGTCTTTCTCTCCAA  300

seq1  AGTCTTCACTATGGCTAATCAGTTGTTTAAAGCTTAATGCAGAGAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCACTATGGCTAATCAGTTGTTTAAAGCTTAATGCAGAGAACTTG  350

seq1  CATCTCTTGGGGAAGAATAATGATGTCACTAGTGGCCAATCTACCTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGGGGAAGAATAATGATGTCACTAGTGGCCAATCTACCTTGTA  400

seq1  TATTTCCCATGAAGATTTGGAAGGCCTGGATCAAAGAAGTAAATAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCATGAAGATTTGGAAGGCCTGGATCAAAGAAGTAAATAAACAG  450

seq1  AGGAAGAGCATCACAGAAGGAAAAGATGTCTTCAGAAGAACTACCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCATCACAGAAGGAAAAGATGTCTTCAGAAGAACTACCAAAGA  500

seq1  AATATCCAACTCATGACCTGTGGTAATACTGTACTCCAATGGACATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAACTCATGACCTGTGGTAATACTGTACTCCAATGGACATTTCT  550

seq1  GTTATGTAGTTAAAGTTAGATATATAATCCTTTTACTCGACTTCAGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAGTTAAAGTTAGATATATAATCCTTTTACTCGACTTCAGGTTT  600

seq1  AAAAAATGCTTCCTGTCATAAAAGATGAACACTAACCAGATTTATATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCTTCCTGTCATAAAAGATGAACACTAACCAGATTTATATCTG  650

seq1  AGTAAATATGACCCCACATCCATTAAAATGTGACCAAGAAGAGGAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATATGACCCCACATCCATTAAAATGTGACCAAGAAGAGGAGCAGA  700

seq1  GTTCAATGTTTTTGAAGCAGAAGATGAAACTATACATCAGTCTATGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGTTTTTGAAGCAGAAGATGAAACTATACATCAGTCTATGGTAT  750

seq1  GAAGATTCAGAAGTCCAATTCAAACCATGTGATCATTTAACATGTCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCAGAAGTCCAATTCAAACCATGTGATCATTTAACATGTCTGGA  800

seq1  CATGAGCAAGCATGCCAATTGAAAGGGGACATCCACGCTGGGATCAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAAGCATGCCAATTGAAAGGGGACATCCACGCTGGGATCAGGTT  850

seq1  TAATAAGACATCATTTTCTACTCTATCCATCAGTCAGAATCACATACACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGACATCATTTTCTACTCTATCCATCAGTCAGAATCACATACACG  900

seq1  AGCTAACCATTTCCGTTTGTGAACATGGGTGTAGTGTATAGATTTGAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCTAACCATTTCCGTTTGTGAACATGGGTGTAGTGTATAGATTTGAGC-  949

seq1  AGAGGAAG-ATGTCTGAGGCAGAAGAGAGGTGGAG-AAGAGCTGAATGTT  998
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGGAAGAATGTCTGAGGCAGAAGAGAGGTGGAGAAAGAGCTGAATGTT  999

seq1  CTCCAAGAAT-AATAGTGCATTCCTG-CCAAGCC-TTCAGCATCTGAACT  1045
      |||||||||| ||||||||||||||| ||||||| |||||||||||||||
seq2  CTCCAAGAATAAATAGTGCATTCCTGCCCAAGCCTTTCAGCATCTGAACT  1049

seq1  TCCAGG---GTGTGTGTTGATTAAC-AGGGTTAGGGTTTCATCTGTTATT  1091
      ||||||   |||||||||||||||| ||| ||||||||||||||| || |
seq2  TCCAGGGGTGTGTGTGTTGATTAACAAGGCTTAGGGTTTCATCTG-TAAT  1098

seq1  ACTTAACTGACATGTTGCTGCAAATTATAG-CTGGAGCACAGTA--GTGG  1138
      || ||||||||||||  |||| || ||||| |||||||||||||  | ||
seq2  ACCTAACTGACATGTGCCTGCCAA-TATAGCCTGGAGCACAGTAAGGGGG  1147

seq1  GTTATGGA  1146
       |||||||
seq2  ATTATGGA  1155


seq1: chr6_21639506_21640001
seq2: B6Ng01-323B22.g_66_559 (reverse)

seq1  AAATAGCGACAGCCAGCTTCACCCCATTCAGGAGCCTCCTACAGATCATG  50
      ||||| ||||||||||||||||||||||||||||| | ||||||||||||
seq2  AAATAACGACAGCCAGCTTCACCCCATTCAGGAGCTTTCTACAGATCATG  50

seq1  TACATTTGCTAGTAG-TTCCTGGGTGCCTCTGTCTACGTCAGCAGAAGAT  99
      | ||| ||  ||||| || || | | || |||| ||||||||||  ||||
seq2  TGCATATGTCAGTAGATTTCT-GTTTCCACTGTGTACGTCAGCAATAGAT  99

seq1  TGCTACGCTACCCTCGTAAAATGGAAGCTCTATGAAGGAGGATGAGCCCC  149
      |  ||||| ||||    ||    | | ||| ||||||||||||||| || 
seq2  TTTTACGCAACCCAATAAACCCTGTATCTCAATGAAGGAGGATGAG-CCA  148

seq1  GGGGGTTGTTTCAGATAAAGGAGGCTTGCAATGGTTATTCATTTCA-AGA  198
      |||| ||||||   || |  ||||||  ||| |||||   |||||| | |
seq2  GGGGTTTGTTTTTAATCACAGAGGCTCTCAAAGGTTA-AAATTTCACACA  197

seq1  GTGGAAGGAAAGGAAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  248
           |   |   | || | ||||||||||||||||||||||||||||||
seq2  CACACACACACACACAC-ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  246

seq1  AGAGAGAGAGAGAGAGATTGAGAGAGAGAGAGATTCCCCTTTTGTGGCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGATTGAGAGAGAGAGAGATTCCCCTTTTGTGGCAG  296

seq1  TCCTAAAAAGCAGTAACAAATATAACGATACATAGCAAAAACACTTTCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAAGCAGTAACAAATATAACGATACATAGCAAAAACACTTTCAC  346

seq1  CAGCCTTCTTTAATTGAAATGCTATTGTGCCCAAGGGTGGGCATGAACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCTTTAATTGAAATGCTATTGTGCCCAAGGGTGGGCATGAACAT  396

seq1  AGCTGAGCCAAATGACAATGAATTACAGACCTCCTGGGGAAATTCATTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCCAAATGACAATGAATTACAGACCTCCTGGGGAAATTCATTAG  446

seq1  AAACTGATATGTATATATGCGAAAGAACTATTCAAGGACAGAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATATGTATATATGCGAAAGAACTATTCAAGGACAGAGAATTC  494


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